Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011688

Physical Location & Seq

Genomic Coordinates Reverse (-)

348167 .. 350010

Gene Structure 1844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G02040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGTCTCTAAAAGCCATTCATGTCTCGGAAGTGCCAAGCCTCGACCACTTCCCTGAGAACCCGTCGCTCATTTGCTCCTCTCGCAAAGCGAATAACAAGTTTGTGGTGGTTGGCCATAGAGGACACGGCATGAACATGTCGCAGTCGCCGGATCTAAGGTTCTCTGCTCTCAAGGAGAACTCCATCCTCTCCTTTAATGCCGCTTCAAAATTCCCTCTCGACTTTATCGAATTCGATGTTCAGGTCACCAGAGATGGCTGCCCAATCATATTCCACGACGACTTCATCTACTCCGAGGAACAGGGAGTGGTGTACGAGAAGAGGGTCACGGAGGTTTGCTTGTCGGAGTTCATGTCCTACGGGCCACAGAGGGATACAGGCAAGACAGGAAAGCCTTTGCTGAGAAAGTCAAAGGAAGGGAAGATCCATAAGTGGAGCGTCGCAACCGACGACTCTTTCTGTACTCTCCAAGAGGCTTTTGAGAAAGTAGAGAATCCAAACCTCGGTTTCAACATCGAACTCAAGCTTGACGACAACGTCTTCTATTCCTCCGATCACCTCTCCCGTCTTCTCCTCCCAATCTTGCAGGTCGTGTCTGATATCGGAAACGACAGAACTATCATCTTCTCCAGCTTCCATCCTGATGCAGCCCTTCTTGTCAGGAAGTTGCAGACCACCTACCCCGTATTCTTCTTGACCAACGGAGGAACTGAGATGTACCACGACACGAGAAGGAATTCGCTTGAGGAAGCAATCAAAGTATGTTTAGAAGGAGGCCTCCAAGGGATTGTCTCGGAGGTGAAGGGAGTATTCCGCAACCCCGCTCTTGTCAACAAGATAAAAGAATCCAAGCTCTCTCTGATGACATACGGAAAGCTAAACAATGTAGCCGAGGCGGTTTACATGCAGCATTTGATGGGGATAGAGGGAGTGATAGTTGATCATGTGGAGGAGATAACAGAGGCGGTGAGGGAGATGATGAAGCCATCCAACAGAGATGCTGATGGTACTAAGCCAAAGCCTAACTTCTCTGACAGAGAGCTCTCCTTTCTTCTCAAGCTCATTCCCGAGTTGATACAACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009536 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0046872 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

361

Amino Acids

40.71

Weight (kDa)

5.87

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	39 - 317	1.8e-51	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02040
fragaria_vesca	FvH4_6g53990 FvH4_6g53990
malus_domestica	MD09G1006500.v1.1 MD17G1010400.v1.1
prunus_persica	Prupe.3G310500_v2.0.a1 Prupe.3G310500_v2.0.a1
pyrus_communis	pycom111g00480 pycom17g00500
rosa_chinensis	RchiOBHm_Chr2g0176161
rosa_laevigata	RLG00000022386
rosa_multiflora	Rmu_sc0000405.1_g000006
rosa_roxburghii	Rroxscaffold_2G00076720
rosa_rugosa	Rorug02G0591200
rosa_samantha	Rh2AG669800 Rh2BG681400 Rh2CG644300 Rh2DG695100
rosa_wichuraiana	Rw2G054950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	536
Acc36I	ACCTGC	1 cut(s)	577
AccBSI	CCGCTC	1 cut(s)	824
AciI	CCGC	5 cut(s)	201, 814, 822, 896, 965
AclWI	GGATC	2 cut(s)	159, 418
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	3 cut(s)	209, 230, 736
AfaI	GTAC	4 cut(s)	314, 463, 719, 1009
AfiI	CCNNNNNNNGG	1 cut(s)	503
AflIII	ACRYGT	1 cut(s)	135
AgsI	TTSAA	2 cut(s)	207, 511
AloI	GAACNNNNNNTCC	2 cut(s)	143, 175
AluBI	AGCT	6 cut(s)	526, 633, 853, 877, 1042, 1060
AluI	AGCT	6 cut(s)	526, 633, 853, 877, 1042, 1060
Alw21I	GWGCWC	1 cut(s)	1044
Alw26I	GTCTC	3 cut(s)	9, 28, 796
AlwI	GGATC	2 cut(s)	159, 418
Ama87I	CYCGRG	1 cut(s)	1067
AoxI	GGCC	3 cut(s)	112, 362, 775
ApeKI	GCWGC	3 cut(s)	258, 647, 907
ApoI	RAATTY	3 cut(s)	209, 230, 736
Asp700I	GAANNNNTTC	1 cut(s)	736
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	4 cut(s)	238, 548, 811, 979
AvaI	CYCGRG	1 cut(s)	1067
BalI	TGGCCA	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	1044
BauI	CACGAG	1 cut(s)	727
BbsI	GAAGAC	2 cut(s)	532, 560
Bbv12I	GWGCWC	1 cut(s)	1044
BbvI	GCAGC	3 cut(s)	245, 659, 919
BccI	CCATC	6 cut(s)	191, 248, 645, 910, 994, 998
BceAI	ACGGC	1 cut(s)	142
BciVI	GTATCC	1 cut(s)	367
BclI	TGATCA	1 cut(s)	940
BcoDI	GTCTC	3 cut(s)	9, 28, 796
BfuAI	ACCTGC	1 cut(s)	577
BfuI	GTATCC	1 cut(s)	367
BisI	GCNGC	4 cut(s)	201, 259, 648, 908
BlsI	GCNGC	4 cut(s)	202, 260, 649, 909
BmeT110I	CYCGRG	1 cut(s)	1067
BmgT120I	GGNCC	1 cut(s)	362
BmsI	GCATC	2 cut(s)	634, 988
BpiI	GAAGAC	2 cut(s)	532, 560
BpmI	CTGGAG	1 cut(s)	613
BpuEI	CTTGAG	4 cut(s)	155, 506, 764, 1040
BsaJI	CCNNGG	4 cut(s)	294, 502, 781, 891
BsaXI	ACNNNNNCTCC	4 cut(s)	338, 368, 921, 951
Bsc4I	CCNNNNNNNGG	1 cut(s)	503
BseDI	CCNNGG	4 cut(s)	294, 502, 781, 891
BseGI	GGATG	3 cut(s)	183, 637, 986
BseLI	CCNNNNNNNGG	1 cut(s)	503
BseMII	CTCAG	3 cut(s)	45, 392, 702
BseRI	GAGGAG	3 cut(s)	67, 563, 965
BseXI	GCAGC	3 cut(s)	245, 659, 919
BshFI	GGCC	3 cut(s)	114, 364, 777
BsiHKAI	GWGCWC	1 cut(s)	1044
BsiHKCI	CYCGRG	1 cut(s)	1067
BsiSI	CCGG	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	503
BsmAI	GTCTC	3 cut(s)	9, 28, 796
BsnI	GGCC	3 cut(s)	114, 364, 777
BsoBI	CYCGRG	1 cut(s)	1067
Bsp1286I	GDGCHC	1 cut(s)	1044
Bsp143I	GATC	4 cut(s)	151, 423, 553, 940
BspACI	CCGC	5 cut(s)	201, 814, 822, 896, 965
BspANI	GGCC	3 cut(s)	114, 364, 777
BspCNI	CTCAG	3 cut(s)	46, 393, 703
BspMI	ACCTGC	1 cut(s)	577
BspPI	GGATC	2 cut(s)	159, 418
BsrBI	CCGCTC	1 cut(s)	824
BssECI	CCNNGG	4 cut(s)	294, 502, 781, 891
BssMI	GATC	4 cut(s)	151, 423, 553, 940
BssSI	CACGAG	1 cut(s)	727
BssT1I	CCWWGG	1 cut(s)	781
Bst2BI	CACGAG	1 cut(s)	727
Bst6I	CTCTTC	1 cut(s)	314
BstDEI	CTNAG	5 cut(s)	54, 155, 401, 711, 1011
BstEII	GGTNACC	1 cut(s)	244
BstF5I	GGATG	3 cut(s)	183, 637, 986
BstKTI	GATC	4 cut(s)	154, 426, 556, 943
BstMAI	GTCTC	3 cut(s)	9, 28, 796
BstMBI	GATC	4 cut(s)	151, 423, 553, 940
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstNSI	RCATGY	2 cut(s)	139, 907
BstPI	GGTNACC	1 cut(s)	244
BstV1I	GCAGC	3 cut(s)	245, 659, 919
BstV2I	GAAGAC	2 cut(s)	532, 560
BstX2I	RGATCY	2 cut(s)	151, 423
BstYI	RGATCY	2 cut(s)	151, 423
BsuI	GTATCC	1 cut(s)	367
BsuRI	GGCC	3 cut(s)	114, 364, 777
BtsCI	GGATG	3 cut(s)	183, 637, 986
BveI	ACCTGC	1 cut(s)	577
Cfr13I	GGNCC	1 cut(s)	362
CseI	GACGC	1 cut(s)	427
Csp6I	GTAC	4 cut(s)	313, 462, 718, 1008
CviAII	CATG	6 cut(s)	20, 130, 136, 352, 904, 944
CviQI	GTAC	4 cut(s)	313, 462, 718, 1008
DdeI	CTNAG	5 cut(s)	54, 155, 401, 711, 1011
DpnI	GATC	4 cut(s)	153, 425, 555, 942
DpnII	GATC	4 cut(s)	151, 423, 553, 940
DrdI	GACNNNNNNGTC	1 cut(s)	536
DseDI	GACNNNNNNGTC	1 cut(s)	536
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
Ecl136II	GAGCTC	1 cut(s)	1042
Eco130I	CCWWGG	1 cut(s)	781
Eco147I	AGGCCT	1 cut(s)	777
Eco24I	GRGCYC	1 cut(s)	1044
Eco32I	GATATC	1 cut(s)	601
Eco53kI	GAGCTC	1 cut(s)	1042
Eco88I	CYCGRG	1 cut(s)	1067
Eco91I	GGTNACC	1 cut(s)	244
EcoICRI	GAGCTC	1 cut(s)	1042
EcoO65I	GGTNACC	1 cut(s)	244
EcoRI	GAATTC	2 cut(s)	230, 736
EcoRV	GATATC	1 cut(s)	601
EcoT14I	CCWWGG	1 cut(s)	781
EcoT38I	GRGCYC	1 cut(s)	1044
ErhI	CCWWGG	1 cut(s)	781
FaeI	CATG	6 cut(s)	23, 133, 139, 355, 907, 947
FalI	AAGNNNNNCTT	2 cut(s)	1010, 1042
FatI	CATG	6 cut(s)	19, 129, 135, 351, 903, 943
FauI	CCCGC	1 cut(s)	829
FbaI	TGATCA	1 cut(s)	940
Fnu4HI	GCNGC	4 cut(s)	201, 259, 648, 908
FokI	GGATG	3 cut(s)	170, 624, 973
FriOI	GRGCYC	1 cut(s)	1044
Fsp4HI	GCNGC	4 cut(s)	201, 259, 648, 908
GluI	GCNGC	4 cut(s)	201, 259, 648, 908
GsuI	CTGGAG	1 cut(s)	613
HaeIII	GGCC	3 cut(s)	114, 364, 777
HapII	CCGG	1 cut(s)	149
HgaI	GACGC	1 cut(s)	427
Hin1II	CATG	6 cut(s)	23, 133, 139, 355, 907, 947
HincII	GTYRAC	1 cut(s)	832
HindII	GTYRAC	1 cut(s)	832
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	3 cut(s)	452, 493, 845
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	4 cut(s)	238, 548, 811, 979
Hpy166II	GTNNAC	3 cut(s)	313, 832, 901
Hpy188I	TCNGA	9 cut(s)	28, 295, 346, 553, 598, 605, 796, 861, 1033
Hpy188III	TCNNGA	5 cut(s)	218, 641, 661, 694, 1067
Hpy8I	GTNNAC	3 cut(s)	313, 832, 901
Hpy99I	CGWCG	4 cut(s)	67, 281, 443, 452
HpyAV	CCTTC	5 cut(s)	410, 662, 726, 764, 796
HpyCH4IV	ACGT	1 cut(s)	537
HpyCH4V	TGCA	4 cut(s)	586, 647, 670, 907
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpyF3I	CTNAG	5 cut(s)	54, 155, 401, 711, 1011
HpySE526I	ACGT	1 cut(s)	537
Hsp92II	CATG	6 cut(s)	23, 133, 139, 355, 907, 947
Ksp22I	TGATCA	1 cut(s)	940
Kzo9I	GATC	4 cut(s)	151, 423, 553, 940
LmnI	GCTCC	2 cut(s)	80, 435
Lsp1109I	GCAGC	3 cut(s)	245, 659, 919
LweI	GCATC	2 cut(s)	634, 988
MaeII	ACGT	1 cut(s)	537
MaeIII	GTNAC	2 cut(s)	244, 325
MalI	GATC	4 cut(s)	153, 425, 555, 942
MbiI	CCGCTC	1 cut(s)	824
MboI	GATC	4 cut(s)	151, 423, 553, 940
MboII	GAAGA	7 cut(s)	331, 433, 532, 560, 616, 682, 1043
MflI	RGATCY	2 cut(s)	151, 423
MhlI	GDGCHC	1 cut(s)	1044
MlsI	TGGCCA	1 cut(s)	114
MluCI	AATT	3 cut(s)	209, 230, 736
MluNI	TGGCCA	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	2 cut(s)	324, 1014
Mox20I	TGGCCA	1 cut(s)	114
MroXI	GAANNNNTTC	1 cut(s)	736
MscI	TGGCCA	1 cut(s)	114
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	2 cut(s)	134, 642
Msp20I	TGGCCA	1 cut(s)	114
MspI	CCGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	81
NdeII	GATC	4 cut(s)	151, 423, 553, 940
NlaIII	CATG	6 cut(s)	23, 133, 139, 355, 907, 947
NmeAIII	GCCGAG	1 cut(s)	916
NmuCI	GTSAC	2 cut(s)	244, 325
NspI	RCATGY	2 cut(s)	139, 907
PceI	AGGCCT	1 cut(s)	777
PciI	ACATGT	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	2 cut(s)	225, 447
PdmI	GAANNNNTTC	1 cut(s)	736
PfeI	GAWTC	2 cut(s)	493, 845
PflFI	GACNNNGTC	1 cut(s)	536
PkrI	GCNGC	4 cut(s)	202, 260, 649, 909
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
PscI	ACATGT	1 cut(s)	135
Psp124BI	GAGCTC	1 cut(s)	1044
PspEI	GGTNACC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	362
PsuI	RGATCY	2 cut(s)	151, 423
PsyI	GACNNNGTC	1 cut(s)	536
RsaI	GTAC	4 cut(s)	314, 463, 719, 1009
RsaNI	GTAC	4 cut(s)	313, 462, 718, 1008
RseI	CAYNNNNRTG	2 cut(s)	134, 642
SacI	GAGCTC	1 cut(s)	1044
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	4 cut(s)	201, 259, 648, 908
Sau3AI	GATC	4 cut(s)	151, 423, 553, 940
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	1 cut(s)	446
SduI	GDGCHC	1 cut(s)	1044
SfaNI	GCATC	2 cut(s)	634, 988
SmiMI	CAYNNNNRTG	2 cut(s)	134, 642
SmlI	CTYRAG	4 cut(s)	170, 521, 743, 1055
SmoI	CTYRAG	4 cut(s)	170, 521, 743, 1055
Sse9I	AATT	3 cut(s)	209, 230, 736
SseBI	AGGCCT	1 cut(s)	777
SsiI	CCGC	5 cut(s)	201, 814, 822, 896, 965
SstI	GAGCTC	1 cut(s)	1044
StuI	AGGCCT	1 cut(s)	777
StyI	CCWWGG	1 cut(s)	781
TaiI	ACGT	1 cut(s)	540
TaqI	TCGA	5 cut(s)	42, 219, 228, 234, 516
TasI	AATT	3 cut(s)	209, 230, 736
TatI	WGTACW	1 cut(s)	461
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	2 cut(s)	493, 845
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TseFI	GTSAC	2 cut(s)	244, 325
TseI	GCWGC	3 cut(s)	258, 647, 907
Tsp45I	GTSAC	2 cut(s)	244, 325
TspDTI	ATGAA	5 cut(s)	8, 146, 274, 340, 995
TspGWI	ACGGA	3 cut(s)	344, 717, 885
Tth111I	GACNNNGTC	1 cut(s)	536
XapI	RAATTY	3 cut(s)	209, 230, 736
XceI	RCATGY	2 cut(s)	139, 907
XmnI	GAANNNNTTC	1 cut(s)	736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.