Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011688

Physical Location & Seq

Genomic Coordinates Forward (+)

39487057 .. 39490380

Gene Structure 3324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g53990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGCTCTTAAGGCGGTCCATGTCTCCGACGTCCCTAACCTCGATCAGGTGCCGGAAAATGCCTCTTTGCAGCGTTACTCCACCCGCTTCTCCAAAGGTGTGGAATTTGGTCGGGTGGCGTCGAGAATACCCAAGTTTCTAGTGATCGGACACAGAGGGAATGGAATGAACGCTTTGCAGTCGTCTGATCGGAGAATGAGAGCAATTAAGGAAAACACGATCACGTCGTTTAACACAGCTGCAAAGTACCCTCTTGATTTCGTCGAATTTGATGTTCAGGTAACCAGAGATGGCTGCCCTGTCATTTTCCACGACGACTTCATTCTCACCGAGGATCAGGGTACTGTGTTTGAGAAGAGAATAACTGAATTGTGTTTGACGGAGTTCCTAAGTTATGGTCCACAAAAAGAAGTTGGAAAGGAAGGGAAGCCTTTGTTGAGGAAAAACAAAAACGGCCAAATTGTAAGATGGGATGTTGAACAAGATGACTCCCTCTGTACCCTCCAGGAAGTCTTTGAGAAGGTTGAACCTTCTCTTGGCTTCAACATTGAGATCAAATTCGACGACTGCATTGTGTACCAGGAGGACTATCTCATACGCGTCCTTCAATCCATCCTGCAAGTTGTGTTTGAGTATGCCAAAGATAGGCCCATCGTATTCTCCTCATTCCAACCTGATGCATCACTCCTCATTAAGAAGTTGCAGAACACCTACCCTGTCTTTTTCTTGACAAATGGTGGGAATGAGATCTACTATGATGTGAGGAGGAATTCTTTGGATGAAGCAATGAAGATGTGTTTGGAGGGTGGTTTGGATGGTATAGTTTCGGAGGTCAGAGGTGTCTTCAGAAATCCTGAGATGGTAACCAAGATTAAGGAGTCCAACCTTTCACTTCTATCTTATGGCAAACTGAATAATGTTGCCGAAGCAGTATACATGCAACACCTAATGGGAATTGAGGGAGTGATTGTGGATTTTGTGGAAGAGATCACGGAGGCTGTGTGTGATATGATACAAAAGCCATTGACGGCCGCAGAAGAAGACGGGGATGATTTGTTGGAAGGGGATGGTAAGATGCAATTGAAATCAAAGCCACAGTTCTCGCAGAGGGAGCTTTCCTTTCTGTTGAAGCTCATTCCAGAATTGATACAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009536 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0046872 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

386

Amino Acids

43.74

Weight (kDa)

4.93

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	51 - 328	2.1e-45	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02040
fragaria_vesca	FvH4_6g53990 FvH4_6g53990
malus_domestica	MD09G1006500.v1.1 MD17G1010400.v1.1
prunus_persica	Prupe.3G310500_v2.0.a1 Prupe.3G310500_v2.0.a1
pyrus_communis	pycom111g00480 pycom17g00500
rosa_chinensis	RchiOBHm_Chr2g0176161
rosa_laevigata	RLG00000022386
rosa_multiflora	Rmu_sc0000405.1_g000006
rosa_roxburghii	Rroxscaffold_2G00076720
rosa_rugosa	Rorug02G0591200
rosa_samantha	Rh2AG669800 Rh2BG681400 Rh2CG644300 Rh2DG695100
rosa_wichuraiana	Rw2G054950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	33
AccB1I	GGYRCC	1 cut(s)	49
AccI	GTMKAC	1 cut(s)	933
AccII	CGCG	1 cut(s)	600
AciI	CCGC	3 cut(s)	14, 85, 1032
AclWI	GGATC	1 cut(s)	342
AcoI	YGGCCR	2 cut(s)	454, 1029
AcsI	RAATTY	4 cut(s)	104, 266, 557, 769
AcuI	CTGAAG	1 cut(s)	829
AcyI	GRCGYC	2 cut(s)	30, 119
AfaI	GTAC	4 cut(s)	248, 343, 499, 578
AfiI	CCNNNNNNNGG	3 cut(s)	46, 536, 645
AflII	CTTAAG	1 cut(s)	8
AflIII	ACRYGT	1 cut(s)	598
AgsI	TTSAA	6 cut(s)	479, 527, 544, 608, 1084, 1129
AjiI	CACGTC	1 cut(s)	225
AjnI	CCWGG	2 cut(s)	504, 579
AjuI	GAANNNNNNNTTGG	4 cut(s)	519, 551, 782, 814
AluBI	AGCT	4 cut(s)	239, 1114, 1132, 1153
AluI	AGCT	4 cut(s)	239, 1114, 1132, 1153
Alw26I	GTCTC	1 cut(s)	28
AlwI	GGATC	1 cut(s)	342
AoxI	GGCC	3 cut(s)	454, 647, 1029
ApeKI	GCWGC	3 cut(s)	70, 239, 294
ApoI	RAATTY	4 cut(s)	104, 266, 557, 769
AspS9I	GGNCC	3 cut(s)	16, 398, 648
AsuHPI	GGTGA	1 cut(s)	319
AvaII	GGWCC	2 cut(s)	16, 398
BanI	GGYRCC	1 cut(s)	49
BbsI	GAAGAC	2 cut(s)	835, 1047
BbvI	GCAGC	3 cut(s)	82, 226, 281
BccI	CCATC	7 cut(s)	284, 462, 620, 659, 809, 853, 1061
BceAI	ACGGC	2 cut(s)	469, 1044
BciT130I	CCWGG	2 cut(s)	506, 581
BcoDI	GTCTC	1 cut(s)	28
BfaI	CTAG	1 cut(s)	140
BfrI	CTTAAG	1 cut(s)	8
BglII	AGATCT	1 cut(s)	747
BisI	GCNGC	4 cut(s)	71, 240, 295, 1032
BlsI	GCNGC	4 cut(s)	72, 241, 296, 1033
Bme1390I	CCNGG	2 cut(s)	506, 581
Bme18I	GGWCC	2 cut(s)	16, 398
BmgBI	CACGTC	1 cut(s)	225
BmgT120I	GGNCC	3 cut(s)	16, 398, 648
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	2 cut(s)	506, 581
BmsI	GCATC	3 cut(s)	667, 689, 1065
BpiI	GAAGAC	2 cut(s)	835, 1047
BpmI	CTGGAG	1 cut(s)	488
BsaHI	GRCGYC	2 cut(s)	30, 119
BsaJI	CCNNGG	1 cut(s)	330
BsaXI	ACNNNNNCTCC	4 cut(s)	954, 984, 986, 1016
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 536, 645
Bse3DI	GCAATG	1 cut(s)	792
BseBI	CCWGG	2 cut(s)	506, 581
BseDI	CCNNGG	1 cut(s)	330
BseGI	GGATG	6 cut(s)	478, 612, 784, 820, 1054, 1072
BseLI	CCNNNNNNNGG	3 cut(s)	46, 536, 645
BseMI	GCAATG	1 cut(s)	792
BseMII	CTCAG	1 cut(s)	846
BseRI	GAGGAG	3 cut(s)	652, 677, 778
BseX3I	CGGCCG	1 cut(s)	1029
BseXI	GCAGC	3 cut(s)	82, 226, 281
Bsh1236I	CGCG	1 cut(s)	600
Bsh1285I	CGRYCG	1 cut(s)	1032
BshFI	GGCC	3 cut(s)	456, 649, 1031
BshNI	GGYRCC	1 cut(s)	49
BsiEI	CGRYCG	1 cut(s)	1032
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	17
BslI	CCNNNNNNNGG	3 cut(s)	46, 536, 645
BsmAI	GTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	17
BsnI	GGCC	3 cut(s)	456, 649, 1031
Bsp143I	GATC	8 cut(s)	43, 144, 187, 219, 334, 552, 747, 987
BspACI	CCGC	3 cut(s)	14, 85, 1032
BspANI	GGCC	3 cut(s)	456, 649, 1031
BspCNI	CTCAG	1 cut(s)	847
BspFNI	CGCG	1 cut(s)	600
BspLI	GGNNCC	1 cut(s)	51
BspPI	GGATC	1 cut(s)	342
BspT107I	GGYRCC	1 cut(s)	49
BspTI	CTTAAG	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	792
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	8 cut(s)	43, 144, 187, 219, 334, 552, 747, 987
BssNAI	GTATAC	1 cut(s)	934
BssNI	GRCGYC	2 cut(s)	30, 119
Bst1107I	GTATAC	1 cut(s)	934
Bst2UI	CCWGG	2 cut(s)	506, 581
Bst4CI	ACNGT	2 cut(s)	346, 1098
Bst6I	CTCTTC	2 cut(s)	350, 978
BstACI	GRCGYC	2 cut(s)	30, 119
BstAFI	CTTAAG	1 cut(s)	8
BstDEI	CTNAG	2 cut(s)	389, 855
BstEII	GGTNACC	2 cut(s)	280, 862
BstENI	CCTNNNNNAGG	1 cut(s)	44
BstF5I	GGATG	6 cut(s)	478, 612, 784, 820, 1054, 1072
BstFNI	CGCG	1 cut(s)	600
BstKTI	GATC	8 cut(s)	46, 147, 190, 222, 337, 555, 750, 990
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	8 cut(s)	43, 144, 187, 219, 334, 552, 747, 987
BstMCI	CGRYCG	1 cut(s)	1032
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 1111
BstNI	CCWGG	2 cut(s)	506, 581
BstNSI	RCATGY	1 cut(s)	940
BstPI	GGTNACC	2 cut(s)	280, 862
BstSCI	CCNGG	2 cut(s)	504, 579
BstUI	CGCG	1 cut(s)	600
BstV1I	GCAGC	3 cut(s)	82, 226, 281
BstV2I	GAAGAC	2 cut(s)	835, 1047
BstX2I	RGATCY	1 cut(s)	747
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	747
BstZ17I	GTATAC	1 cut(s)	934
BstZI	CGGCCG	1 cut(s)	1029
BsuRI	GGCC	3 cut(s)	456, 649, 1031
BtrI	CACGTC	1 cut(s)	225
BtsCI	GGATG	6 cut(s)	478, 612, 784, 820, 1054, 1072
Cfr13I	GGNCC	3 cut(s)	16, 398, 648
CseI	GACGC	2 cut(s)	108, 589
Csp6I	GTAC	4 cut(s)	247, 342, 498, 577
CviAII	CATG	2 cut(s)	20, 937
CviQI	GTAC	4 cut(s)	247, 342, 498, 577
DdeI	CTNAG	2 cut(s)	389, 855
DpnI	GATC	8 cut(s)	45, 146, 189, 221, 336, 554, 749, 989
DpnII	GATC	8 cut(s)	43, 144, 187, 219, 334, 552, 747, 987
EaeI	YGGCCR	2 cut(s)	454, 1029
EagI	CGGCCG	1 cut(s)	1029
Eam1104I	CTCTTC	2 cut(s)	350, 978
EarI	CTCTTC	2 cut(s)	350, 978
EclXI	CGGCCG	1 cut(s)	1029
Eco47I	GGWCC	2 cut(s)	16, 398
Eco52I	CGGCCG	1 cut(s)	1029
Eco57I	CTGAAG	1 cut(s)	829
Eco91I	GGTNACC	2 cut(s)	280, 862
EcoNI	CCTNNNNNAGG	1 cut(s)	44
EcoO65I	GGTNACC	2 cut(s)	280, 862
EcoRI	GAATTC	1 cut(s)	769
EcoRII	CCWGG	2 cut(s)	504, 579
EcoT22I	ATGCAT	1 cut(s)	682
FaeI	CATG	2 cut(s)	23, 940
FaqI	GGGAC	1 cut(s)	17
FatI	CATG	2 cut(s)	19, 936
FauI	CCCGC	1 cut(s)	92
FblI	GTMKAC	1 cut(s)	933
Fnu4HI	GCNGC	4 cut(s)	71, 240, 295, 1032
FokI	GGATG	6 cut(s)	485, 599, 791, 827, 1061, 1079
Fsp4HI	GCNGC	4 cut(s)	71, 240, 295, 1032
FspBI	CTAG	1 cut(s)	140
GluI	GCNGC	4 cut(s)	71, 240, 295, 1032
GsuI	CTGGAG	1 cut(s)	488
HaeIII	GGCC	3 cut(s)	456, 649, 1031
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	2 cut(s)	108, 589
Hin1I	GRCGYC	2 cut(s)	30, 119
Hin1II	CATG	2 cut(s)	23, 940
HinfI	GANTC	2 cut(s)	488, 878
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	3 cut(s)	401, 577, 934
Hpy188I	TCNGA	8 cut(s)	28, 149, 187, 192, 829, 836, 848, 1157
Hpy188III	TCNNGA	5 cut(s)	123, 254, 727, 854, 1139
Hpy8I	GTNNAC	3 cut(s)	401, 577, 934
Hpy99I	CGWCG	6 cut(s)	32, 124, 229, 266, 317, 566
HpyAV	CCTTC	5 cut(s)	416, 514, 540, 614, 1055
HpyCH4III	ACNGT	2 cut(s)	346, 1098
HpyCH4IV	ACGT	2 cut(s)	30, 224
HpyCH4V	TGCA	9 cut(s)	70, 178, 242, 570, 619, 680, 703, 940, 1078
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 1111
HpyF3I	CTNAG	2 cut(s)	389, 855
HpySE526I	ACGT	2 cut(s)	30, 224
Hsp92I	GRCGYC	2 cut(s)	30, 119
Hsp92II	CATG	2 cut(s)	23, 940
Kzo9I	GATC	8 cut(s)	43, 144, 187, 219, 334, 552, 747, 987
LmnI	GCTCC	1 cut(s)	1111
Lsp1109I	GCAGC	3 cut(s)	82, 226, 281
LweI	GCATC	3 cut(s)	667, 689, 1065
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	2 cut(s)	30, 224
MaeIII	GTNAC	3 cut(s)	74, 280, 862
MalI	GATC	8 cut(s)	45, 146, 189, 221, 336, 554, 749, 989
MboI	GATC	8 cut(s)	43, 144, 187, 219, 334, 552, 747, 987
MboII	GAAGA	6 cut(s)	367, 802, 835, 995, 1049, 1052
MfeI	CAATTG	1 cut(s)	1079
MflI	RGATCY	1 cut(s)	747
MluI	ACGCGT	1 cut(s)	598
MlyI	GAGTC	2 cut(s)	482, 887
MmeI	TCCRAC	5 cut(s)	51, 394, 694, 906, 1038
Mph1103I	ATGCAT	1 cut(s)	682
MseI	TTAA	5 cut(s)	9, 207, 231, 693, 873
MspA1I	CMGCKG	1 cut(s)	239
MspCI	CTTAAG	1 cut(s)	8
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	2 cut(s)	506, 581
MunI	CAATTG	1 cut(s)	1079
MvaI	CCWGG	2 cut(s)	506, 581
MvnI	CGCG	1 cut(s)	600
MwoI	GCNNNNNNNGC	2 cut(s)	11, 1111
NdeII	GATC	8 cut(s)	43, 144, 187, 219, 334, 552, 747, 987
NlaIII	CATG	2 cut(s)	23, 940
NlaIV	GGNNCC	1 cut(s)	51
NsiI	ATGCAT	1 cut(s)	682
NspI	RCATGY	1 cut(s)	940
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PfoI	TCCNGGA	1 cut(s)	504
PkrI	GCNGC	4 cut(s)	72, 241, 296, 1033
PleI	GAGTC	2 cut(s)	482, 886
PpsI	GAGTC	2 cut(s)	482, 886
Psp6I	CCWGG	2 cut(s)	504, 579
PspEI	GGTNACC	2 cut(s)	280, 862
PspGI	CCWGG	2 cut(s)	504, 579
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	3 cut(s)	16, 398, 648
PsuI	RGATCY	1 cut(s)	747
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	4 cut(s)	248, 343, 499, 578
RsaNI	GTAC	4 cut(s)	247, 342, 498, 577
SaqAI	TTAA	5 cut(s)	9, 207, 231, 693, 873
SatI	GCNGC	4 cut(s)	71, 240, 295, 1032
Sau3AI	GATC	8 cut(s)	43, 144, 187, 219, 334, 552, 747, 987
Sau96I	GGNCC	3 cut(s)	16, 398, 648
SchI	GAGTC	2 cut(s)	482, 887
ScrFI	CCNGG	2 cut(s)	506, 581
SfaNI	GCATC	3 cut(s)	667, 689, 1065
SinI	GGWCC	2 cut(s)	16, 398
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
SsiI	CCGC	3 cut(s)	14, 85, 1032
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	2 cut(s)	504, 579
TaaI	ACNGT	2 cut(s)	346, 1098
TaiI	ACGT	2 cut(s)	33, 227
TaqI	TCGA	4 cut(s)	42, 122, 264, 561
TauI	GCSGC	1 cut(s)	1034
Tru1I	TTAA	5 cut(s)	9, 207, 231, 693, 873
Tru9I	TTAA	5 cut(s)	9, 207, 231, 693, 873
TseI	GCWGC	3 cut(s)	70, 239, 294
TspDTI	ATGAA	4 cut(s)	182, 310, 795, 803
TspGWI	ACGGA	2 cut(s)	395, 1007
Vha464I	CTTAAG	1 cut(s)	8
VpaK11BI	GGWCC	2 cut(s)	16, 398
XagI	CCTNNNNNAGG	1 cut(s)	44
XapI	RAATTY	4 cut(s)	104, 266, 557, 769
XceI	RCATGY	1 cut(s)	940
XmiI	GTMKAC	1 cut(s)	933
XspI	CTAG	1 cut(s)	140
ZraI	GACGTC	1 cut(s)	31
Zsp2I	ATGCAT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.