Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011688

Physical Location & Seq

Genomic Coordinates Forward (+)

71363284 .. 71365091

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0591200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAAGAGAAGAATGATCAGATGGATAAGGTTGATGATGTCATGTTGCCGGGTTTTCGCTTCCATCCAACTGATGAGGAACTTGTGGGTTTTTACCTCAAGAGAAAAATTCAGCAAAGGCTTCTCCCCATTGAACTGATTAAGCAAGTGGACATTTATAAATATGATCCCTGGGATCTTCCAAAGCTGGCAAGTACTGGGGAGAAAGAGTGGTACTTCTACTGCCCAAGGGATCGAAAATACCGCAACAGTGCTAGGCCTAACCGAGTCACAGGAGCCGGGTTTTGGAAAGCAACAGGAACAGACAGGCCTATTTATTCATCTGAAGGCTCCAAGTGCATAGGCCTAAAGAAGTCCCTTGTGTTCTACAGAGGCAGAGCTGCTAAAGGAATCAAAACTGATTGGATGATGCACGAGTTTCGCCTCCCTTCTATCCCAGACTCATCACCACCCAAGAAGCTGTTAGATAAAAGCCTTCCTCCAAATGATGCATGGGCCATTTGCAGGATTTTCAAGAAAACAAACTCAATGGCACAGAGGGCTCTTTCTCAATCTTGGCTATCTACACTGCCCGAACCTACAGCATCCGGTTTTCTAACTCAATGCCCTCAGTTCAGTTCCGAAAACAACATATCTTGCACCACTGACTTAGGATCAGCCATCCAGTTTTGGAGTAACAACAATGAATTACAACATCAACAAGGTTCAACTTACTCAGCTTTCGACGCTCTCCCTTATAAACACAACTTCAATCCTGTATTAGTCGGAGAAAACATTCCCAATGGCATCATGTTCTCTCCAATTGAAATGTCATCACCACCCAATTTCAACCACGCCTTAGTTGGTGACTTGAGTAACAACCACACCTCAGGGAGCATAGACTTTGATGGCTCACAACAACAACAGTTTAGTAATGGCTTCTCAATCAGTTTGGCTCAAGATCAGATTCAACAAAACAACAACACAAGCCAGGCTAACAATAACAATAGTCATTGGGGGACTATCAGATCAATTGGGTTTCCTTTCAGTTTGGGTTCAGATGATCCTAGTGACATGTCTACTAGCTATTCTACAAGCAAATGTTATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009536 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0046872 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

363

Amino Acids

41.01

Weight (kDa)

7.04

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	17 - 142	9e-48	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02040
fragaria_vesca	FvH4_6g53990 FvH4_6g53990
malus_domestica	MD09G1006500.v1.1 MD17G1010400.v1.1
prunus_persica	Prupe.3G310500_v2.0.a1 Prupe.3G310500_v2.0.a1
pyrus_communis	pycom111g00480 pycom17g00500
rosa_chinensis	RchiOBHm_Chr2g0176161
rosa_laevigata	RLG00000022386
rosa_multiflora	Rmu_sc0000405.1_g000006
rosa_roxburghii	Rroxscaffold_2G00076720
rosa_rugosa	Rorug02G0591200
rosa_samantha	Rh2AG669800 Rh2BG681400 Rh2CG644300 Rh2DG695100
rosa_wichuraiana	Rw2G054950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	159, 738
AccI	GTMKAC	1 cut(s)	1058
AciI	CCGC	1 cut(s)	244
AclWI	GGATC	5 cut(s)	161, 183, 240, 661, 1037
AcsI	RAATTY	1 cut(s)	108
AcuI	CTGAAG	1 cut(s)	345
AfaI	GTAC	2 cut(s)	196, 215
AfiI	CCNNNNNNNGG	2 cut(s)	285, 504
AflIII	ACRYGT	1 cut(s)	1053
AgsI	TTSAA	7 cut(s)	134, 514, 708, 751, 806, 829, 950
AjnI	CCWGG	2 cut(s)	170, 969
AluBI	AGCT	5 cut(s)	187, 380, 460, 719, 1065
AluI	AGCT	5 cut(s)	187, 380, 460, 719, 1065
AlwI	GGATC	5 cut(s)	161, 183, 240, 661, 1037
AoxI	GGCC	4 cut(s)	257, 308, 343, 495
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	1 cut(s)	108
Asp700I	GAANNNNTTC	1 cut(s)	774
AspS9I	GGNCC	1 cut(s)	495
AsuC2I	CCSGG	2 cut(s)	51, 280
AsuHPI	GGTGA	3 cut(s)	438, 807, 857
AxyI	CCTNAGG	1 cut(s)	868
BanII	GRGCYC	1 cut(s)	544
BauI	CACGAG	1 cut(s)	413
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	4 cut(s)	16, 72, 668, 881
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	2 cut(s)	172, 971
BclI	TGATCA	1 cut(s)	16
BcnI	CCSGG	2 cut(s)	51, 280
BfaI	CTAG	3 cut(s)	255, 1047, 1062
BfmI	CTRYAG	2 cut(s)	367, 579
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
BmcAI	AGTACT	1 cut(s)	196
Bme1390I	CCNGG	4 cut(s)	51, 172, 280, 971
BmgT120I	GGNCC	1 cut(s)	495
BmiI	GGNNCC	2 cut(s)	277, 331
BmrFI	CCNGG	4 cut(s)	51, 172, 280, 971
BmrI	ACTGGG	1 cut(s)	207
BmsI	GCATC	4 cut(s)	399, 478, 593, 795
BmuI	ACTGGG	1 cut(s)	207
BpuEI	CTTGAG	3 cut(s)	83, 871, 921
BpuMI	CCSGG	2 cut(s)	51, 280
BsaJI	CCNNGG	3 cut(s)	170, 171, 227
BsaWI	WCCGGW	1 cut(s)	587
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	2 cut(s)	285, 504
Bse1I	ACTGG	2 cut(s)	202, 664
Bse21I	CCTNAGG	1 cut(s)	868
BseBI	CCWGG	2 cut(s)	172, 971
BseDI	CCNNGG	3 cut(s)	170, 171, 227
BseGI	GGATG	4 cut(s)	64, 411, 584, 660
BseLI	CCNNNNNNNGG	2 cut(s)	285, 504
BseMII	CTCAG	3 cut(s)	623, 729, 882
BseNI	ACTGG	2 cut(s)	202, 664
BseXI	GCAGC	1 cut(s)	367
BshFI	GGCC	4 cut(s)	259, 310, 345, 497
BsiSI	CCGG	3 cut(s)	50, 279, 588
BslFI	GGGAC	2 cut(s)	340, 1012
BslI	CCNNNNNNNGG	2 cut(s)	285, 504
BsmFI	GGGAC	2 cut(s)	340, 1012
BsnI	GGCC	4 cut(s)	259, 310, 345, 497
Bsp1286I	GDGCHC	1 cut(s)	544
Bsp143I	GATC	8 cut(s)	16, 166, 175, 232, 653, 940, 1007, 1042
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	4 cut(s)	259, 310, 345, 497
BspCNI	CTCAG	3 cut(s)	622, 728, 881
BspLI	GGNNCC	2 cut(s)	277, 331
BspPI	GGATC	5 cut(s)	161, 183, 240, 661, 1037
BsrI	ACTGG	2 cut(s)	202, 664
BssECI	CCNNGG	3 cut(s)	170, 171, 227
BssMI	GATC	8 cut(s)	16, 166, 175, 232, 653, 940, 1007, 1042
BssSI	CACGAG	1 cut(s)	413
BssT1I	CCWWGG	1 cut(s)	227
Bst2BI	CACGAG	1 cut(s)	413
Bst2UI	CCWGG	2 cut(s)	172, 971
Bst4CI	ACNGT	2 cut(s)	251, 906
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	5 cut(s)	609, 649, 715, 838, 868
BstF5I	GGATG	4 cut(s)	64, 411, 584, 660
BstKTI	GATC	8 cut(s)	19, 169, 178, 235, 656, 943, 1010, 1045
BstMBI	GATC	8 cut(s)	16, 166, 175, 232, 653, 940, 1007, 1042
BstMWI	GCNNNNNNNGC	3 cut(s)	336, 539, 725
BstNI	CCWGG	2 cut(s)	172, 971
BstNSI	RCATGY	1 cut(s)	1057
BstSCI	CCNGG	4 cut(s)	49, 170, 278, 969
BstSFI	CTRYAG	2 cut(s)	367, 579
BstV1I	GCAGC	1 cut(s)	367
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
Bsu36I	CCTNAGG	1 cut(s)	868
BsuRI	GGCC	4 cut(s)	259, 310, 345, 497
BtsCI	GGATG	4 cut(s)	64, 411, 584, 660
BtsI	GCAGTG	1 cut(s)	566
BtsIMutI	CAGTG	3 cut(s)	256, 566, 642
Cac8I	GCNNGC	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	495
CseI	GACGC	1 cut(s)	734
Csp6I	GTAC	2 cut(s)	195, 214
CviAII	CATG	4 cut(s)	43, 492, 790, 1054
CviQI	GTAC	2 cut(s)	195, 214
DdeI	CTNAG	5 cut(s)	609, 649, 715, 838, 868
DpnI	GATC	8 cut(s)	18, 168, 177, 234, 655, 942, 1009, 1044
DpnII	GATC	8 cut(s)	16, 166, 175, 232, 653, 940, 1007, 1042
Eco130I	CCWWGG	1 cut(s)	227
Eco147I	AGGCCT	3 cut(s)	259, 310, 345
Eco24I	GRGCYC	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	345
Eco81I	CCTNAGG	1 cut(s)	868
EcoRII	CCWGG	2 cut(s)	170, 969
EcoT14I	CCWWGG	1 cut(s)	227
EcoT22I	ATGCAT	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	544
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	4 cut(s)	46, 495, 793, 1057
FaqI	GGGAC	2 cut(s)	340, 1012
FatI	CATG	4 cut(s)	42, 491, 789, 1053
FbaI	TGATCA	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	1058
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	4 cut(s)	51, 418, 571, 647
FriOI	GRGCYC	1 cut(s)	544
Fsp4HI	GCNGC	1 cut(s)	381
FspBI	CTAG	3 cut(s)	255, 1047, 1062
GluI	GCNGC	1 cut(s)	381
HaeIII	GGCC	4 cut(s)	259, 310, 345, 497
HapII	CCGG	3 cut(s)	50, 279, 588
HgaI	GACGC	1 cut(s)	734
Hin1II	CATG	4 cut(s)	46, 495, 793, 1057
HinfI	GANTC	4 cut(s)	267, 390, 440, 946
HpaII	CCGG	3 cut(s)	50, 279, 588
HphI	GGTGA	3 cut(s)	438, 807, 857
Hpy166II	GTNNAC	2 cut(s)	151, 1059
Hpy188I	TCNGA	7 cut(s)	21, 325, 622, 767, 945, 1007, 1039
Hpy188III	TCNNGA	3 cut(s)	100, 514, 938
Hpy8I	GTNNAC	2 cut(s)	151, 1059
Hpy99I	CGWCG	1 cut(s)	728
HpyAV	CCTTC	3 cut(s)	320, 438, 485
HpyCH4III	ACNGT	2 cut(s)	251, 906
HpyCH4V	TGCA	5 cut(s)	339, 412, 491, 504, 639
HpyF10VI	GCNNNNNNNGC	3 cut(s)	336, 539, 725
HpyF3I	CTNAG	5 cut(s)	609, 649, 715, 838, 868
Hsp92II	CATG	4 cut(s)	46, 495, 793, 1057
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	8 cut(s)	16, 166, 175, 232, 653, 940, 1007, 1042
LmnI	GCTCC	3 cut(s)	275, 335, 873
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	4 cut(s)	399, 478, 593, 795
MaeI	CTAG	3 cut(s)	255, 1047, 1062
MaeIII	GTNAC	5 cut(s)	268, 674, 845, 854, 1049
MalI	GATC	8 cut(s)	18, 168, 177, 234, 655, 942, 1009, 1044
MboI	GATC	8 cut(s)	16, 166, 175, 232, 653, 940, 1007, 1042
MboII	GAAGA	3 cut(s)	17, 22, 170
MfeI	CAATTG	2 cut(s)	801, 1011
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	544
MluCI	AATT	5 cut(s)	108, 686, 801, 823, 1011
MlyI	GAGTC	2 cut(s)	276, 434
MmeI	TCCRAC	2 cut(s)	92, 745
MnlI	CCTC	8 cut(s)	70, 107, 365, 434, 489, 531, 618, 877
Mph1103I	ATGCAT	1 cut(s)	493
MroXI	GAANNNNTTC	1 cut(s)	774
MseI	TTAA	1 cut(s)	141
MspI	CCGG	3 cut(s)	50, 279, 588
MspR9I	CCNGG	4 cut(s)	51, 172, 280, 971
MunI	CAATTG	2 cut(s)	801, 1011
MvaI	CCWGG	2 cut(s)	172, 971
MwoI	GCNNNNNNNGC	3 cut(s)	336, 539, 725
NciI	CCSGG	2 cut(s)	51, 280
NdeII	GATC	8 cut(s)	16, 166, 175, 232, 653, 940, 1007, 1042
NlaIII	CATG	4 cut(s)	46, 495, 793, 1057
NlaIV	GGNNCC	2 cut(s)	277, 331
NmuCI	GTSAC	3 cut(s)	268, 845, 1049
NsiI	ATGCAT	1 cut(s)	493
NspI	RCATGY	1 cut(s)	1057
PasI	CCCWGGG	1 cut(s)	171
PceI	AGGCCT	3 cut(s)	259, 310, 345
PciI	ACATGT	1 cut(s)	1053
PdmI	GAANNNNTTC	1 cut(s)	774
PfeI	GAWTC	2 cut(s)	390, 946
PkrI	GCNGC	1 cut(s)	382
PleI	GAGTC	2 cut(s)	275, 434
PpsI	GAGTC	2 cut(s)	275, 434
PscI	ACATGT	1 cut(s)	1053
PsiI	TTATAA	2 cut(s)	159, 738
Psp6I	CCWGG	2 cut(s)	170, 969
PspGI	CCWGG	2 cut(s)	170, 969
PspN4I	GGNNCC	2 cut(s)	277, 331
PspPI	GGNCC	1 cut(s)	495
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	2 cut(s)	196, 215
RsaNI	GTAC	2 cut(s)	195, 214
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	8 cut(s)	16, 166, 175, 232, 653, 940, 1007, 1042
Sau96I	GGNCC	1 cut(s)	495
ScaI	AGTACT	1 cut(s)	196
SchI	GAGTC	2 cut(s)	276, 434
ScrFI	CCNGG	4 cut(s)	51, 172, 280, 971
SduI	GDGCHC	1 cut(s)	544
SfaNI	GCATC	4 cut(s)	399, 478, 593, 795
SfcI	CTRYAG	2 cut(s)	367, 579
SmlI	CTYRAG	3 cut(s)	98, 850, 936
SmoI	CTYRAG	3 cut(s)	98, 850, 936
Sse9I	AATT	5 cut(s)	108, 686, 801, 823, 1011
SseBI	AGGCCT	3 cut(s)	259, 310, 345
SsiI	CCGC	1 cut(s)	244
SspMI	CTAG	3 cut(s)	255, 1047, 1062
StuI	AGGCCT	3 cut(s)	259, 310, 345
StyD4I	CCNGG	4 cut(s)	49, 170, 278, 969
StyI	CCWWGG	1 cut(s)	227
TaaI	ACNGT	2 cut(s)	251, 906
TaqI	TCGA	2 cut(s)	235, 723
TasI	AATT	5 cut(s)	108, 686, 801, 823, 1011
TatI	WGTACW	1 cut(s)	194
TfiI	GAWTC	2 cut(s)	390, 946
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	3 cut(s)	256, 573, 649
TseFI	GTSAC	3 cut(s)	268, 845, 1049
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	3 cut(s)	268, 845, 1049
TspDTI	ATGAA	2 cut(s)	309, 699
TspRI	CASTG	3 cut(s)	256, 573, 649
XapI	RAATTY	1 cut(s)	108
XceI	RCATGY	1 cut(s)	1057
XcmI	CCANNNNNNNNNTGG	2 cut(s)	489, 839
XmiI	GTMKAC	1 cut(s)	1058
XmnI	GAANNNNTTC	1 cut(s)	774
XspI	CTAG	3 cut(s)	255, 1047, 1062
ZrmI	AGTACT	1 cut(s)	196
Zsp2I	ATGCAT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.