Rh2AG669800

Glycerophosphodiester phosphodiesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0011688
Physical Location & Seq
Forward (+)
88388109 .. 88390667
2559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG669800.1

Sequence Viewer

Length: 1155 bp
ATGGCTCTTAAGGCTGTCCATGTCTCCGACGTTCCTAACCTCGATCAGGTCCCGGAAAATGCCTCTCTTCAGCTTTACTCCACCCGCTTCTCCAAAGGTGTGGAATTTGGTCGGGTGGCATCGAGAATACCTAAGTTTCTAGTGATCGGACACAGAGGGAATGGAATGAACGCTTTACAGTCGTCTGATCGGAGAATGAGAGCCATTAAGGAAAACTCCATCATGTCGTTCAACACTGCTGCCAAATACCCTCTTGATTTTGTGGAATTTGACGTTCAGGTAACCAAAGATGGCTGCCCCGTCATTTTCCACGACGACTTCATCCTCACCGAAGATCAGGGTACCGTGTTTGAGAAGAGAATACCTGAACTGTGTTTAACGGAGTTCCTAAATTATGGTCCACAAAGAGAGGCAGGAAAGGATGGAAAGGCTTTGTTAAGGAAAAACAAAGACGGTCAAATTGTAAGATGGGAGGTTGAAAAAGATGATTCCCTCTGTACCCTCCAAGAAGTTTTTGAGAAGGTCGAACCTTCTGTTGGCTTCAACATTGAGATCAAATTCGACGACTACATTGTTTACCAGGAGGACTATCTCGTCAGTGTCCTTCAATCCATCTTGAAAGTTGTGTTTGAGTACGCCAAAGATAGGCCTATTGTATTCTCGTCATTCCAACCAGATGCAGCGGTCCTTGTTAAGAAGTTGCAGAACACCTACCCTGTCTTTTTCTTGACAAATGGTGGGAATGAGATTTACTGTGATGTGAGAAGGAATTCTTTGGATGAAGCAATAAAGGTGTGCTTAGAGGGTGGTTTGGAAGGTATTGTATCGGAGGTGAAATGTGTTTTCCGAAATCCTGGGGCGGTAACCAAGATCAAGGAGTCCAAGCTTTCACTTCTAACCTATGGCAAACTAAATAATGTTGCCGAAGCAGTGTACATGCAACACCTAATGGGAATTGAGGGAGTGATTGTGGATTTTGTGCAAGAGATCACAGAAGCAGTGTGTGATATGATAAAGCCATCGGCGGCCACGGAAGAAGACGGGGATGATTTGTTGGAAGGGGACGGGAAGATGCATTTGAAATCAAAGCCGGAGTTCTCGCAGAGGGAGCTTTCCTTTCTGTTGAAGCTCATTCCAGAATTGATACAACTCTGA

Protein Analysis

384

Amino Acids

43.27

Weight (kDa)

5.02

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDPD PF03009 51 - 328 1.2e-45 Glycerophosphoryl diester phosphodiesterase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011688)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02040
fragaria_vesca FvH4_6g53990 FvH4_6g53990
malus_domestica MD09G1006500.v1.1 MD17G1010400.v1.1
prunus_persica Prupe.3G310500_v2.0.a1 Prupe.3G310500_v2.0.a1
pyrus_communis pycom111g00480 pycom17g00500
rosa_chinensis RchiOBHm_Chr2g0176161
rosa_laevigata RLG00000022386
rosa_multiflora Rmu_sc0000405.1_g000006
rosa_roxburghii Rroxscaffold_2G00076720
rosa_rugosa Rorug02G0591200
rosa_samantha Rh2AG669800 Rh2BG681400 Rh2CG644300 Rh2DG695100
rosa_wichuraiana Rw2G054950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 593
Acc65I GGTACC 1 cut(s) 341
AccB1I GGYRCC 1 cut(s) 341
AciI CCGC 4 cut(s) 85, 683, 860, 1025
AcoI YGGCCR 1 cut(s) 1026
AcsI RAATTY 4 cut(s) 104, 266, 557, 769
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 4 cut(s) 343, 499, 635, 935
AfiI CCNNNNNNNGG 3 cut(s) 46, 536, 645
AflII CTTAAG 1 cut(s) 8
AgsI TTSAA 7 cut(s) 232, 479, 544, 608, 619, 1081, 1126
AjnI CCWGG 2 cut(s) 579, 853
AjuI GAANNNNNNNTTGG 2 cut(s) 519, 551
AluBI AGCT 4 cut(s) 73, 886, 1111, 1129
AluI AGCT 4 cut(s) 73, 886, 1111, 1129
Alw26I GTCTC 1 cut(s) 28
AoxI GGCC 2 cut(s) 647, 1026
ApeKI GCWGC 3 cut(s) 239, 294, 680
ApoI RAATTY 4 cut(s) 104, 266, 557, 769
Asp700I GAANNNNTTC 1 cut(s) 769
Asp718I GGTACC 1 cut(s) 341
AspS9I GGNCC 3 cut(s) 49, 398, 685
AsuC2I CCSGG 1 cut(s) 53
AsuHPI GGTGA 2 cut(s) 319, 844
AvaII GGWCC 3 cut(s) 49, 398, 685
BanI GGYRCC 1 cut(s) 341
BbsI GAAGAC 1 cut(s) 1044
BbvI GCAGC 3 cut(s) 226, 281, 692
BccI CCATC 6 cut(s) 227, 284, 416, 462, 620, 1027
BciT130I CCWGG 2 cut(s) 581, 855
BcnI CCSGG 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 28
BfaI CTAG 1 cut(s) 140
BfrI CTTAAG 1 cut(s) 8
BisI GCNGC 4 cut(s) 240, 295, 681, 1026
BlsI GCNGC 4 cut(s) 241, 296, 682, 1027
Bme1390I CCNGG 3 cut(s) 53, 581, 855
Bme18I GGWCC 3 cut(s) 49, 398, 685
BmgT120I GGNCC 3 cut(s) 49, 398, 685
BmiI GGNNCC 2 cut(s) 51, 343
BmrFI CCNGG 3 cut(s) 53, 581, 855
BmsI GCATC 3 cut(s) 128, 667, 1062
BpiI GAAGAC 1 cut(s) 1044
BpuMI CCSGG 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 854, 1029
BsaXI ACNNNNNCTCC 2 cut(s) 954, 984
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 536, 645
BseBI CCWGG 2 cut(s) 581, 855
BseDI CCNNGG 2 cut(s) 854, 1029
BseGI GGATG 4 cut(s) 321, 427, 784, 1051
BseLI CCNNNNNNNGG 3 cut(s) 46, 536, 645
BseXI GCAGC 3 cut(s) 226, 281, 692
BshFI GGCC 2 cut(s) 649, 1028
BshNI GGYRCC 1 cut(s) 341
BsiSI CCGG 2 cut(s) 53, 1091
BslFI GGGAC 2 cut(s) 35, 1076
BslI CCNNNNNNNGG 3 cut(s) 46, 536, 645
BsmAI GTCTC 1 cut(s) 28
BsmFI GGGAC 2 cut(s) 35, 1076
BsnI GGCC 2 cut(s) 649, 1028
Bsp1407I TGTACA 1 cut(s) 933
Bsp143I GATC 7 cut(s) 43, 144, 187, 334, 552, 870, 987
BspACI CCGC 4 cut(s) 85, 683, 860, 1025
BspANI GGCC 2 cut(s) 649, 1028
BspLI GGNNCC 2 cut(s) 51, 343
BspT107I GGYRCC 1 cut(s) 341
BspTI CTTAAG 1 cut(s) 8
BsrGI TGTACA 1 cut(s) 933
BssECI CCNNGG 2 cut(s) 854, 1029
BssMI GATC 7 cut(s) 43, 144, 187, 334, 552, 870, 987
Bst2UI CCWGG 2 cut(s) 581, 855
Bst4CI ACNGT 5 cut(s) 180, 346, 372, 455, 755
Bst6I CTCTTC 2 cut(s) 72, 350
BstAFI CTTAAG 1 cut(s) 8
BstAUI TGTACA 1 cut(s) 933
BstDEI CTNAG 2 cut(s) 132, 799
BstDSI CCRYGG 1 cut(s) 1029
BstEII GGTNACC 2 cut(s) 280, 862
BstENI CCTNNNNNAGG 1 cut(s) 44
BstF5I GGATG 4 cut(s) 321, 427, 784, 1051
BstKTI GATC 7 cut(s) 46, 147, 190, 337, 555, 873, 990
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 7 cut(s) 43, 144, 187, 334, 552, 870, 987
BstMWI GCNNNNNNNGC 2 cut(s) 11, 1108
BstNI CCWGG 2 cut(s) 581, 855
BstNSI RCATGY 1 cut(s) 940
BstPI GGTNACC 2 cut(s) 280, 862
BstSCI CCNGG 3 cut(s) 51, 579, 853
BstV1I GCAGC 3 cut(s) 226, 281, 692
BstV2I GAAGAC 1 cut(s) 1044
BstXI CCANNNNNNTGG 1 cut(s) 100
BsuRI GGCC 2 cut(s) 649, 1028
BtgI CCRYGG 1 cut(s) 1029
BtsCI GGATG 4 cut(s) 321, 427, 784, 1051
BtsI GCAGTG 3 cut(s) 234, 936, 1005
BtsIMutI CAGTG 4 cut(s) 234, 604, 936, 1005
Cfr13I GGNCC 3 cut(s) 49, 398, 685
Csp6I GTAC 4 cut(s) 342, 498, 634, 934
CviAII CATG 3 cut(s) 20, 223, 937
CviQI GTAC 4 cut(s) 342, 498, 634, 934
DdeI CTNAG 2 cut(s) 132, 799
DpnI GATC 7 cut(s) 45, 146, 189, 336, 554, 872, 989
DpnII GATC 7 cut(s) 43, 144, 187, 334, 552, 870, 987
DrdI GACNNNNNNGTC 1 cut(s) 593
DseDI GACNNNNNNGTC 1 cut(s) 593
EaeI YGGCCR 1 cut(s) 1026
Eam1104I CTCTTC 2 cut(s) 72, 350
EarI CTCTTC 2 cut(s) 72, 350
Eco147I AGGCCT 1 cut(s) 649
Eco47I GGWCC 3 cut(s) 49, 398, 685
Eco57I CTGAAG 1 cut(s) 53
Eco91I GGTNACC 2 cut(s) 280, 862
EcoNI CCTNNNNNAGG 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 49
EcoO65I GGTNACC 2 cut(s) 280, 862
EcoRI GAATTC 1 cut(s) 769
EcoRII CCWGG 2 cut(s) 579, 853
EcoT22I ATGCAT 1 cut(s) 1077
FaeI CATG 3 cut(s) 23, 226, 940
FaiI YATR 6 cut(s) 21, 224, 396, 903, 938, 1010
FalI AAGNNNNNCTT 4 cut(s) 757, 789, 782, 814
FaqI GGGAC 2 cut(s) 35, 1076
FatI CATG 3 cut(s) 19, 222, 936
FauI CCCGC 1 cut(s) 92
Fnu4HI GCNGC 4 cut(s) 240, 295, 681, 1026
FokI GGATG 4 cut(s) 308, 434, 791, 1058
Fsp4HI GCNGC 4 cut(s) 240, 295, 681, 1026
FspBI CTAG 1 cut(s) 140
GluI GCNGC 4 cut(s) 240, 295, 681, 1026
HaeIII GGCC 2 cut(s) 649, 1028
HapII CCGG 2 cut(s) 53, 1091
Hin1II CATG 3 cut(s) 23, 226, 940
HindIII AAGCTT 1 cut(s) 884
HinfI GANTC 2 cut(s) 488, 878
HpaII CCGG 2 cut(s) 53, 1091
HphI GGTGA 2 cut(s) 319, 844
Hpy166II GTNNAC 3 cut(s) 401, 577, 934
Hpy188I TCNGA 7 cut(s) 28, 149, 187, 192, 829, 848, 1154
Hpy188III TCNNGA 5 cut(s) 123, 254, 616, 727, 1136
Hpy8I GTNNAC 3 cut(s) 401, 577, 934
Hpy99I CGWCG 3 cut(s) 32, 317, 566
HpyAV CCTTC 6 cut(s) 514, 540, 614, 759, 809, 1052
HpyCH4III ACNGT 5 cut(s) 180, 346, 372, 455, 755
HpyCH4IV ACGT 2 cut(s) 30, 273
HpyCH4V TGCA 5 cut(s) 680, 703, 940, 982, 1075
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 1108
HpyF3I CTNAG 2 cut(s) 132, 799
HpySE526I ACGT 2 cut(s) 30, 273
Hsp92II CATG 3 cut(s) 23, 226, 940
KpnI GGTACC 1 cut(s) 345
Kzo9I GATC 7 cut(s) 43, 144, 187, 334, 552, 870, 987
LmnI GCTCC 1 cut(s) 1108
Lsp1109I GCAGC 3 cut(s) 226, 281, 692
LweI GCATC 3 cut(s) 128, 667, 1062
MaeI CTAG 1 cut(s) 140
MaeII ACGT 2 cut(s) 30, 273
MaeIII GTNAC 2 cut(s) 280, 862
MalI GATC 7 cut(s) 45, 146, 189, 336, 554, 872, 989
MboI GATC 7 cut(s) 43, 144, 187, 334, 552, 870, 987
MboII GAAGA 6 cut(s) 59, 344, 367, 1046, 1049, 1081
MluCI AATT 8 cut(s) 104, 266, 391, 459, 557, 769, 954, 1139
MlyI GAGTC 1 cut(s) 887
MmeI TCCRAC 3 cut(s) 51, 694, 1035
Mph1103I ATGCAT 1 cut(s) 1077
MroXI GAANNNNTTC 1 cut(s) 769
MseI TTAA 5 cut(s) 9, 207, 377, 437, 693
MspA1I CMGCKG 1 cut(s) 683
MspCI CTTAAG 1 cut(s) 8
MspI CCGG 2 cut(s) 53, 1091
MspR9I CCNGG 3 cut(s) 53, 581, 855
MvaI CCWGG 2 cut(s) 581, 855
MwoI GCNNNNNNNGC 2 cut(s) 11, 1108
NciI CCSGG 1 cut(s) 53
NdeII GATC 7 cut(s) 43, 144, 187, 334, 552, 870, 987
NlaIII CATG 3 cut(s) 23, 226, 940
NlaIV GGNNCC 2 cut(s) 51, 343
NsiI ATGCAT 1 cut(s) 1077
NspI RCATGY 1 cut(s) 940
PceI AGGCCT 1 cut(s) 649
PdmI GAANNNNTTC 1 cut(s) 769
PfeI GAWTC 1 cut(s) 488
PfoI TCCNGGA 1 cut(s) 51
PkrI GCNGC 4 cut(s) 241, 296, 682, 1027
PleI GAGTC 1 cut(s) 886
PpsI GAGTC 1 cut(s) 886
PpuMI RGGWCCY 1 cut(s) 49
Psp5II RGGWCCY 1 cut(s) 49
Psp6I CCWGG 2 cut(s) 579, 853
PspEI GGTNACC 2 cut(s) 280, 862
PspGI CCWGG 2 cut(s) 579, 853
PspN4I GGNNCC 2 cut(s) 51, 343
PspPI GGNCC 3 cut(s) 49, 398, 685
PspPPI RGGWCCY 1 cut(s) 49
RsaI GTAC 4 cut(s) 343, 499, 635, 935
RsaNI GTAC 4 cut(s) 342, 498, 634, 934
SaqAI TTAA 5 cut(s) 9, 207, 377, 437, 693
SatI GCNGC 4 cut(s) 240, 295, 681, 1026
Sau3AI GATC 7 cut(s) 43, 144, 187, 334, 552, 870, 987
Sau96I GGNCC 3 cut(s) 49, 398, 685
SchI GAGTC 1 cut(s) 887
ScrFI CCNGG 3 cut(s) 53, 581, 855
SfaNI GCATC 3 cut(s) 128, 667, 1062
SinI GGWCC 3 cut(s) 49, 398, 685
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 8 cut(s) 104, 266, 391, 459, 557, 769, 954, 1139
SseBI AGGCCT 1 cut(s) 649
SsiI CCGC 4 cut(s) 85, 683, 860, 1025
SspMI CTAG 1 cut(s) 140
StuI AGGCCT 1 cut(s) 649
StyD4I CCNGG 3 cut(s) 51, 579, 853
TaaI ACNGT 5 cut(s) 180, 346, 372, 455, 755
TaiI ACGT 2 cut(s) 33, 276
TaqI TCGA 4 cut(s) 42, 122, 525, 561
TasI AATT 8 cut(s) 104, 266, 391, 459, 557, 769, 954, 1139
TatI WGTACW 1 cut(s) 933
TauI GCSGC 1 cut(s) 1028
TfiI GAWTC 1 cut(s) 488
Tru1I TTAA 5 cut(s) 9, 207, 377, 437, 693
Tru9I TTAA 5 cut(s) 9, 207, 377, 437, 693
TscAI CASTG 4 cut(s) 241, 604, 936, 1005
TseI GCWGC 3 cut(s) 239, 294, 680
TspDTI ATGAA 3 cut(s) 182, 310, 795
TspGWI ACGGA 2 cut(s) 395, 1046
TspRI CASTG 4 cut(s) 241, 604, 936, 1005
Vha464I CTTAAG 1 cut(s) 8
VpaK11BI GGWCC 3 cut(s) 49, 398, 685
XagI CCTNNNNNAGG 1 cut(s) 44
XapI RAATTY 4 cut(s) 104, 266, 557, 769
XceI RCATGY 1 cut(s) 940
XmnI GAANNNNTTC 1 cut(s) 769
XspI CTAG 1 cut(s) 140
Zsp2I ATGCAT 1 cut(s) 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.