Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0011688

Physical Location & Seq

Genomic Coordinates Reverse (-)

645073 .. 648029

Gene Structure 2957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1010400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCTCTCAAGGCCGTCCACGTCTCCGACGTCCCGAATCTCGATCAGGTGCCGGAAAACGCCTCTCTGGCGCTCTACTCCTCCCGCTTCCCCAAAGGTGTGGAGATGAATCGGGGGGCACCGAGGATACCCAAGTTTCTAGTGATCGGACACAGAGGGAACGGAATGAACGCGCTACAGTCGTCCGATCGGAGAATGAGAGCCATTAAAGAGAACTCCATCATGTCCTTCAACGCCGCCGCCAGCTTCCCCCTCGATTTCATCGAATTCGATGTTCAGGTAACCAAAGATGACTGCCCGGTCATTTTCCACGACGACTTCATCTTCTCTGAAGAAAACGGTACTGTGTTTCAGAGGAGAATTACCGAACTGTGTCTCTCGGAATTCCTAAACTATGGTCCGCAAAGAGAGCCAGGGAAGGAGGGAAAGTTGTTGTTAAGGAAAACCAAAGATGGTAAAATAGTAAGATGGGATGTCGAAAATGATGACCCCCACTGCACGCTCCAAGAGGCCTTTGAGCAGGTCGAGCCTTCCCTCGGCTTCAACATCGAGTTGAAATTCGATGATTACATTGTTTACCAGGAGGACTCTCTCTTCCGCGTCCTTCAGTCCGTCTTGCAAGTGGTGTTTGAGTATGCCAGAGATAGGCCGGTCATTTTCTCAAGCTTCCAACCTGATGCGGCCTTGTTGGTTAAAAAGTTGCAGAACACTTACCCTGTCTTTTTCTTGACAAATGGTGGGAATGAGCTTTACTATGATGTGCGAAGGAATTCTTTGGAGGAGGCGATAAAAGTATGTTTGGAGGGTGGTTTGCAAGGTATTGTGTCGGAGGTTAAAGGCGTTTTCAGAAATCCCGGGGCTCTAACCAAGATCAAGGAGGCCAAGCTTTCACTCCTAACTTACGGCAAATTGAACAACGTGCCGGAAGCAGTATACATGCAACACCTAATGGGAATCGAGGGAGTGATAGTGGATTTTGTGAAAGAGATAACGGAGGCGGTGTCGGATATGATTGAGCCATCAGGGGGGGCGGAGGAAGACGGGAGCATAATGCAGGAGAAATCAAAGCCGGAGTTCTCACAGAGGGAGCTTTCTTTTCTGTTGAAGTTGATTCCGGAGTTGATACAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009536 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0046872 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

378

Amino Acids

42.62

Weight (kDa)

5.01

Isoelectric Point (pI)

47.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	51 - 328	7.2e-42	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02040
fragaria_vesca	FvH4_6g53990 FvH4_6g53990
malus_domestica	MD09G1006500.v1.1 MD17G1010400.v1.1
prunus_persica	Prupe.3G310500_v2.0.a1 Prupe.3G310500_v2.0.a1
pyrus_communis	pycom111g00480 pycom17g00500
rosa_chinensis	RchiOBHm_Chr2g0176161
rosa_laevigata	RLG00000022386
rosa_multiflora	Rmu_sc0000405.1_g000006
rosa_roxburghii	Rroxscaffold_2G00076720
rosa_rugosa	Rorug02G0591200
rosa_samantha	Rh2AG669800 Rh2BG681400 Rh2CG644300 Rh2DG695100
rosa_wichuraiana	Rw2G054950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	299
AatII	GACGTC	1 cut(s)	33
Acc36I	ACCTGC	1 cut(s)	511
AccB1I	GGYRCC	2 cut(s)	49, 118
AccI	GTMKAC	1 cut(s)	933
AccII	CGCG	2 cut(s)	173, 600
AccIII	TCCGGA	1 cut(s)	1114
AciI	CCGC	8 cut(s)	85, 237, 240, 401, 598, 680, 998, 1031
AcsI	RAATTY	4 cut(s)	266, 383, 557, 769
AcuI	CTGAAG	2 cut(s)	351, 590
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	1 cut(s)	343
AfiI	CCNNNNNNNGG	3 cut(s)	536, 645, 1025
AgsI	TTSAA	5 cut(s)	232, 544, 556, 913, 1105
AjiI	CACGTC	1 cut(s)	22
AjnI	CCWGG	2 cut(s)	412, 579
AluBI	AGCT	6 cut(s)	246, 666, 748, 886, 1090, 1129
AluI	AGCT	6 cut(s)	246, 666, 748, 886, 1090, 1129
Alw26I	GTCTC	2 cut(s)	28, 380
Ama87I	CYCGRG	1 cut(s)	854
Aor13HI	TCCGGA	1 cut(s)	1114
AoxI	GGCC	5 cut(s)	12, 510, 647, 681, 879
ApoI	RAATTY	4 cut(s)	266, 383, 557, 769
Asp700I	GAANNNNTTC	1 cut(s)	769
AspLEI	GCGC	2 cut(s)	73, 175
AspS9I	GGNCC	1 cut(s)	398
AsuC2I	CCSGG	3 cut(s)	299, 855, 856
AvaI	CYCGRG	1 cut(s)	854
AvaII	GGWCC	1 cut(s)	398
BaeGI	GKGCMC	1 cut(s)	121
BaeI	ACNNNNGTAYC	2 cut(s)	119, 152
BanI	GGYRCC	2 cut(s)	49, 118
BanII	GRGCYC	1 cut(s)	862
BbsI	GAAGAC	1 cut(s)	1044
BccI	CCATC	4 cut(s)	227, 446, 462, 1027
BceAI	ACGGC	1 cut(s)	919
BciT130I	CCWGG	2 cut(s)	414, 581
BciVI	GTATCC	1 cut(s)	120
BcnI	CCSGG	3 cut(s)	299, 855, 856
BcoDI	GTCTC	2 cut(s)	28, 380
BfaI	CTAG	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	176
BfoI	RGCGCY	1 cut(s)	74
BfuAI	ACCTGC	1 cut(s)	511
BfuI	GTATCC	1 cut(s)	120
BglI	GCCNNNNNGGC	1 cut(s)	68
BisI	GCNGC	3 cut(s)	237, 240, 681
BlsI	GCNGC	3 cut(s)	238, 241, 682
Bme1390I	CCNGG	5 cut(s)	299, 414, 581, 855, 856
Bme18I	GGWCC	1 cut(s)	398
BmeT110I	CYCGRG	1 cut(s)	854
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	2 cut(s)	51, 120
BmrFI	CCNGG	5 cut(s)	299, 414, 581, 855, 856
BmsI	GCATC	1 cut(s)	667
BpiI	GAAGAC	1 cut(s)	1044
BpuEI	CTTGAG	1 cut(s)	646
BpuMI	CCSGG	3 cut(s)	299, 855, 856
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	5 cut(s)	122, 413, 535, 854, 855
BsaWI	WCCGGW	1 cut(s)	1114
BsaXI	ACNNNNNCTCC	6 cut(s)	413, 443, 954, 984, 986, 1016
Bsc4I	CCNNNNNNNGG	3 cut(s)	536, 645, 1025
Bse118I	RCCGGY	1 cut(s)	649
BseAI	TCCGGA	1 cut(s)	1114
BseBI	CCWGG	2 cut(s)	414, 581
BseDI	CCNNGG	5 cut(s)	122, 413, 535, 854, 855
BseGI	GGATG	1 cut(s)	478
BseLI	CCNNNNNNNGG	3 cut(s)	536, 645, 1025
BseRI	GAGGAG	3 cut(s)	70, 370, 794
BseSI	GKGCMC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	481
Bsh1236I	CGCG	2 cut(s)	173, 600
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	5 cut(s)	14, 512, 649, 683, 881
BshNI	GGYRCC	2 cut(s)	49, 118
BsiEI	CGRYCG	1 cut(s)	190
BsiHKCI	CYCGRG	1 cut(s)	854
BsiSI	CCGG	7 cut(s)	53, 299, 650, 855, 923, 1070, 1115
BslFI	GGGAC	1 cut(s)	17
BslI	CCNNNNNNNGG	3 cut(s)	536, 645, 1025
BsmAI	GTCTC	2 cut(s)	28, 380
BsmBI	CGTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	17
BsnI	GGCC	5 cut(s)	14, 512, 649, 683, 881
BsoBI	CYCGRG	1 cut(s)	854
Bsp1286I	GDGCHC	2 cut(s)	121, 862
Bsp13I	TCCGGA	1 cut(s)	1114
Bsp143I	GATC	4 cut(s)	43, 144, 187, 870
BspACI	CCGC	8 cut(s)	85, 237, 240, 401, 598, 680, 998, 1031
BspANI	GGCC	5 cut(s)	14, 512, 649, 683, 881
BspEI	TCCGGA	1 cut(s)	1114
BspFNI	CGCG	2 cut(s)	173, 600
BspLI	GGNNCC	2 cut(s)	51, 120
BspMI	ACCTGC	1 cut(s)	511
BspT107I	GGYRCC	2 cut(s)	49, 118
BsrFI	RCCGGY	1 cut(s)	649
BssAI	RCCGGY	1 cut(s)	649
BssECI	CCNNGG	5 cut(s)	122, 413, 535, 854, 855
BssMI	GATC	4 cut(s)	43, 144, 187, 870
BssNAI	GTATAC	1 cut(s)	934
BssNI	GRCGYC	1 cut(s)	30
Bst1107I	GTATAC	1 cut(s)	934
Bst2UI	CCWGG	2 cut(s)	414, 581
Bst4CI	ACNGT	4 cut(s)	180, 341, 346, 372
Bst6I	CTCTTC	1 cut(s)	599
BstACI	GRCGYC	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	244, 500
BstEII	GGTNACC	1 cut(s)	280
BstF5I	GGATG	1 cut(s)	478
BstFNI	CGCG	2 cut(s)	173, 600
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	2 cut(s)	73, 175
BstKTI	GATC	4 cut(s)	46, 147, 190, 873
BstMAI	GTCTC	2 cut(s)	28, 380
BstMBI	GATC	4 cut(s)	43, 144, 187, 870
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 68, 409, 526
BstNI	CCWGG	2 cut(s)	414, 581
BstNSI	RCATGY	1 cut(s)	940
BstPI	GGTNACC	1 cut(s)	280
BstSCI	CCNGG	5 cut(s)	297, 412, 579, 853, 854
BstSFI	CTRYAG	1 cut(s)	176
BstSLI	GKGCMC	1 cut(s)	121
BstUI	CGCG	2 cut(s)	173, 600
BstV2I	GAAGAC	1 cut(s)	1044
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstZ17I	GTATAC	1 cut(s)	934
BsuI	GTATCC	1 cut(s)	120
BsuRI	GGCC	5 cut(s)	14, 512, 649, 683, 881
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	478
BtsI	GCAGTG	1 cut(s)	493
BtsIMutI	CAGTG	1 cut(s)	493
BveI	ACCTGC	1 cut(s)	511
Cac8I	GCNNGC	2 cut(s)	244, 500
CfoI	GCGC	2 cut(s)	73, 175
Cfr10I	RCCGGY	1 cut(s)	649
Cfr13I	GGNCC	1 cut(s)	398
Cfr9I	CCCGGG	1 cut(s)	854
CseI	GACGC	1 cut(s)	589
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	2 cut(s)	223, 937
CviQI	GTAC	1 cut(s)	342
DpnI	GATC	4 cut(s)	45, 146, 189, 872
DpnII	GATC	4 cut(s)	43, 144, 187, 870
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
Eam1104I	CTCTTC	1 cut(s)	599
EarI	CTCTTC	1 cut(s)	599
EciI	GGCGGA	1 cut(s)	1046
Eco147I	AGGCCT	1 cut(s)	512
Eco24I	GRGCYC	1 cut(s)	862
Eco47I	GGWCC	1 cut(s)	398
Eco57I	CTGAAG	2 cut(s)	351, 590
Eco88I	CYCGRG	1 cut(s)	854
Eco91I	GGTNACC	1 cut(s)	280
EcoO65I	GGTNACC	1 cut(s)	280
EcoRI	GAATTC	3 cut(s)	266, 383, 769
EcoRII	CCWGG	2 cut(s)	412, 579
EcoT38I	GRGCYC	1 cut(s)	862
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	2 cut(s)	226, 940
FaiI	YATR	9 cut(s)	224, 396, 636, 756, 796, 934, 938, 1010, 1049
FalI	AAGNNNNNCTT	2 cut(s)	757, 789
FaqI	GGGAC	1 cut(s)	17
FatI	CATG	2 cut(s)	222, 936
FauI	CCCGC	1 cut(s)	92
FblI	GTMKAC	1 cut(s)	933
Fnu4HI	GCNGC	3 cut(s)	237, 240, 681
FokI	GGATG	1 cut(s)	485
FriOI	GRGCYC	1 cut(s)	862
Fsp4HI	GCNGC	3 cut(s)	237, 240, 681
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	2 cut(s)	72, 174
GluI	GCNGC	3 cut(s)	237, 240, 681
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	5 cut(s)	14, 512, 649, 683, 881
HapII	CCGG	7 cut(s)	53, 299, 650, 855, 923, 1070, 1115
HgaI	GACGC	1 cut(s)	589
HhaI	GCGC	2 cut(s)	73, 175
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	226, 940
Hin6I	GCGC	2 cut(s)	71, 173
HinP1I	GCGC	2 cut(s)	71, 173
HindIII	AAGCTT	2 cut(s)	664, 884
HinfI	GANTC	5 cut(s)	37, 109, 587, 954, 1111
HpaII	CCGG	7 cut(s)	53, 299, 650, 855, 923, 1070, 1115
Hpy166II	GTNNAC	3 cut(s)	19, 577, 934
Hpy188III	TCNNGA	4 cut(s)	34, 41, 727, 1115
Hpy8I	GTNNAC	3 cut(s)	19, 577, 934
Hpy99I	CGWCG	2 cut(s)	32, 317
HpyAV	CCTTC	5 cut(s)	238, 412, 540, 614, 759
HpyCH4III	ACNGT	4 cut(s)	180, 341, 346, 372
HpyCH4IV	ACGT	3 cut(s)	21, 30, 918
HpyCH4V	TGCA	6 cut(s)	498, 619, 703, 814, 940, 1054
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 68, 409, 526
HpySE526I	ACGT	3 cut(s)	21, 30, 918
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	226, 940
HspAI	GCGC	2 cut(s)	71, 173
Kpn2I	TCCGGA	1 cut(s)	1114
Kzo9I	GATC	4 cut(s)	43, 144, 187, 870
LmnI	GCTCC	3 cut(s)	507, 1044, 1087
LweI	GCATC	1 cut(s)	667
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	3 cut(s)	21, 30, 918
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	4 cut(s)	45, 146, 189, 872
MboI	GATC	4 cut(s)	43, 144, 187, 870
MboII	GAAGA	4 cut(s)	316, 344, 586, 1049
MhlI	GDGCHC	2 cut(s)	121, 862
MluCI	AATT	6 cut(s)	266, 360, 383, 557, 769, 908
MlyI	GAGTC	1 cut(s)	581
MmeI	TCCRAC	4 cut(s)	51, 694, 807, 984
MroI	TCCGGA	1 cut(s)	1114
MroXI	GAANNNNTTC	1 cut(s)	769
MseI	TTAA	4 cut(s)	207, 437, 693, 834
MspI	CCGG	7 cut(s)	53, 299, 650, 855, 923, 1070, 1115
MspR9I	CCNGG	5 cut(s)	299, 414, 581, 855, 856
MvaI	CCWGG	2 cut(s)	414, 581
MvnI	CGCG	2 cut(s)	173, 600
MwoI	GCNNNNNNNGC	4 cut(s)	11, 68, 409, 526
NciI	CCSGG	3 cut(s)	299, 855, 856
NdeII	GATC	4 cut(s)	43, 144, 187, 870
NlaIII	CATG	2 cut(s)	226, 940
NlaIV	GGNNCC	2 cut(s)	51, 120
NmeAIII	GCCGAG	1 cut(s)	516
NspI	RCATGY	1 cut(s)	940
PceI	AGGCCT	1 cut(s)	512
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 261
PdmI	GAANNNNTTC	1 cut(s)	769
PfeI	GAWTC	4 cut(s)	37, 109, 954, 1111
PkrI	GCNGC	3 cut(s)	238, 241, 682
Ple19I	CGATCG	1 cut(s)	190
PleI	GAGTC	1 cut(s)	581
PpsI	GAGTC	1 cut(s)	581
Psp6I	CCWGG	2 cut(s)	412, 579
PspEI	GGTNACC	1 cut(s)	280
PspGI	CCWGG	2 cut(s)	412, 579
PspN4I	GGNNCC	2 cut(s)	51, 120
PspPI	GGNCC	1 cut(s)	398
PvuI	CGATCG	1 cut(s)	190
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
SaqAI	TTAA	4 cut(s)	207, 437, 693, 834
SatI	GCNGC	3 cut(s)	237, 240, 681
Sau3AI	GATC	4 cut(s)	43, 144, 187, 870
Sau96I	GGNCC	1 cut(s)	398
SchI	GAGTC	1 cut(s)	581
ScrFI	CCNGG	5 cut(s)	299, 414, 581, 855, 856
SduI	GDGCHC	2 cut(s)	121, 862
SfaNI	GCATC	1 cut(s)	667
SfcI	CTRYAG	1 cut(s)	176
SinI	GGWCC	1 cut(s)	398
SmaI	CCCGGG	1 cut(s)	856
SmlI	CTYRAG	2 cut(s)	8, 661
SmoI	CTYRAG	2 cut(s)	8, 661
Sse9I	AATT	6 cut(s)	266, 360, 383, 557, 769, 908
SseBI	AGGCCT	1 cut(s)	512
SsiI	CCGC	8 cut(s)	85, 237, 240, 401, 598, 680, 998, 1031
SspMI	CTAG	1 cut(s)	140
StuI	AGGCCT	1 cut(s)	512
StyD4I	CCNGG	5 cut(s)	297, 412, 579, 853, 854
TaaI	ACNGT	4 cut(s)	180, 341, 346, 372
TaiI	ACGT	3 cut(s)	24, 33, 921
TaqI	TCGA	9 cut(s)	42, 255, 264, 270, 477, 525, 549, 561, 957
TasI	AATT	6 cut(s)	266, 360, 383, 557, 769, 908
TauI	GCSGC	3 cut(s)	239, 242, 683
TfiI	GAWTC	4 cut(s)	37, 109, 954, 1111
Tru1I	TTAA	4 cut(s)	207, 437, 693, 834
Tru9I	TTAA	4 cut(s)	207, 437, 693, 834
TscAI	CASTG	1 cut(s)	500
TspDTI	ATGAA	4 cut(s)	122, 182, 250, 310
TspGWI	ACGGA	3 cut(s)	177, 601, 1007
TspMI	CCCGGG	1 cut(s)	854
TspRI	CASTG	1 cut(s)	500
VpaK11BI	GGWCC	1 cut(s)	398
XapI	RAATTY	4 cut(s)	266, 383, 557, 769
XceI	RCATGY	1 cut(s)	940
XmaI	CCCGGG	1 cut(s)	854
XmiI	GTMKAC	1 cut(s)	933
XmnI	GAANNNNTTC	1 cut(s)	769
XspI	CTAG	1 cut(s)	140
ZraI	GACGTC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.