Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0011688

Physical Location & Seq

Genomic Coordinates Reverse (-)

345563 .. 347950

Gene Structure 2388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g00480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGCTACCTCGTCCTCCTCCTTCCCACACTCGTCCTTCCATCAACGTATTACACAACTCTTTCGCTTCCCAGCATCCTCTCTCGTCTCCCTTGTCTTTTTGTTTAATCTTAAACATTATGGCTCTCAAGGCCGTCCACGTCTCCGACGTCCCGAATCTCGATCAGGTGCCGGAAAATGCTTCTATGGCGCTCTATTCCTCCCGCTTCGCCAAAGGTGCGGAGATGAATCGGGCTGCACCGAGGATACCCAGGTTTCTAGTGATCGGACACAGAGGGAACGGAATGAACGCGCTACAGTCGTCCGATCGGAGAATGAGAGCCATTAAAGAGAACTCCATCATGTCCTTCAACGCCGCCGCCAGATTCCCTATCGATTTCGTCGAATTCGATGTTCAGAGGAGAATTAACGAACTGAGTCTGTCCGAATTCCTAAATTATGGTCCGCAAAGAGAGCCAGGGAAGGAAGGAAAGACATTGTTGAGGAAAACCAAAGATGGTAAAATAGTAAAATGGGATGTCGAAAATGATGACCCTCTCTGCACGCTCCAAGAGGCATTTGAGCAGGTCGATCCATCTCTCGGCTTCAACATCGAGCTGAAATTCGATGATAACATTGTTTACCAGGACGACTATCTCTTCCGCGTCCTTCAGTCCGTCTTGCAAGTGGTGTTTGAGTGTGGCAGAGATAGGCCGATCATTTTCTCAAGCTTCCAACCTGATGCCGCCCTCTTGGTTAAAAAGTTGCAGAACACCTACCCTGTCTTTTTCTTAACAAATGGTGGGACTCAGCTTTACTATGACGTGCGAAGGAATTCTTTGGAGGAGGCGATAAAACTGTGTTTGGAGGGTGGTTTACACGGTATTGTGTCGGAGGTTAAAGGCGTGTTCAGAAATCCCGGGGCGGTAACCAAGATCAAAGAGGCCAAGCTTTCACTCCTAACTTACGGCAAATTGAACAATGTGCCGGAAGCAGTTTACATGCAATACCTGATGGGGATCGAGGGAGTGATAGTGGATTTTGTGAAAGAGATCACGGTGGCGGTGTCGGATATGATTAAACCGTTAGGTGGGGCGGAGGAAGACGGGGAGAAGCGTTTGTTGGAAGAAGACGGGCCGATGCAGGTGAAATCAAAGCCGGAGTTCTCAGAGAGGGAGCTTTCTTTTCTATTGAAGCTGATTCCGGAGTTGATACAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009536 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0046872 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

400

Amino Acids

44.92

Weight (kDa)

5.98

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02040
fragaria_vesca	FvH4_6g53990 FvH4_6g53990
malus_domestica	MD09G1006500.v1.1 MD17G1010400.v1.1
prunus_persica	Prupe.3G310500_v2.0.a1 Prupe.3G310500_v2.0.a1
pyrus_communis	pycom111g00480 pycom17g00500
rosa_chinensis	RchiOBHm_Chr2g0176161
rosa_laevigata	RLG00000022386
rosa_multiflora	Rmu_sc0000405.1_g000006
rosa_roxburghii	Rroxscaffold_2G00076720
rosa_rugosa	Rorug02G0591200
rosa_samantha	Rh2AG669800 Rh2BG681400 Rh2CG644300 Rh2DG695100
rosa_wichuraiana	Rw2G054950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1111
AatII	GACGTC	1 cut(s)	150
Acc36I	ACCTGC	2 cut(s)	553, 1111
AccB1I	GGYRCC	1 cut(s)	166
AccII	CGCG	2 cut(s)	290, 642
AccIII	TCCGGA	1 cut(s)	1180
AclWI	GGATC	2 cut(s)	563, 1004
AcsI	RAATTY	4 cut(s)	383, 425, 599, 811
AcuI	CTGAAG	1 cut(s)	632
AcyI	GRCGYC	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	578, 1067
AgsI	TTSAA	4 cut(s)	349, 586, 955, 1171
AjiI	CACGTC	2 cut(s)	139, 802
AjnI	CCWGG	3 cut(s)	248, 454, 621
AjuI	GAANNNNNNNTTGG	2 cut(s)	1082, 1114
AluBI	AGCT	7 cut(s)	595, 708, 790, 928, 1156, 1174, 1195
AluI	AGCT	7 cut(s)	595, 708, 790, 928, 1156, 1174, 1195
Alw26I	GTCTC	2 cut(s)	90, 145
AlwI	GGATC	2 cut(s)	563, 1004
Ama87I	CYCGRG	1 cut(s)	896
Aor13HI	TCCGGA	1 cut(s)	1180
AoxI	GGCC	4 cut(s)	129, 689, 921, 1112
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	4 cut(s)	383, 425, 599, 811
Asp700I	GAANNNNTTC	1 cut(s)	811
AspLEI	GCGC	2 cut(s)	190, 292
AspS9I	GGNCC	2 cut(s)	440, 1112
AsuC2I	CCSGG	2 cut(s)	897, 898
AsuHPI	GGTGA	1 cut(s)	1135
AvaI	CYCGRG	1 cut(s)	896
AvaII	GGWCC	1 cut(s)	440
BaeI	ACNNNNGTAYC	2 cut(s)	236, 269
BanI	GGYRCC	1 cut(s)	166
BbsI	GAAGAC	2 cut(s)	1086, 1113
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	5 cut(s)	47, 344, 488, 580, 985
BceAI	ACGGC	2 cut(s)	116, 961
BciT130I	CCWGG	3 cut(s)	250, 456, 623
BciVI	GTATCC	1 cut(s)	237
BcnI	CCSGG	2 cut(s)	897, 898
BcoDI	GTCTC	2 cut(s)	90, 145
BfaI	CTAG	1 cut(s)	257
BfmI	CTRYAG	1 cut(s)	293
BfoI	RGCGCY	1 cut(s)	191
BfuAI	ACCTGC	2 cut(s)	553, 1111
BfuI	GTATCC	1 cut(s)	237
BisI	GCNGC	4 cut(s)	234, 354, 357, 723
BlsI	GCNGC	4 cut(s)	235, 355, 358, 724
Bme1390I	CCNGG	5 cut(s)	250, 456, 623, 897, 898
Bme18I	GGWCC	1 cut(s)	440
BmeT110I	CYCGRG	1 cut(s)	896
BmgBI	CACGTC	2 cut(s)	139, 802
BmgT120I	GGNCC	2 cut(s)	440, 1112
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	5 cut(s)	250, 456, 623, 897, 898
BmsI	GCATC	3 cut(s)	82, 709, 1107
BpiI	GAAGAC	2 cut(s)	1086, 1113
BpuEI	CTTGAG	2 cut(s)	110, 688
BpuMI	CCSGG	2 cut(s)	897, 898
Bsa29I	ATCGAT	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	995
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	5 cut(s)	239, 248, 455, 896, 897
BsaWI	WCCGGW	1 cut(s)	1180
BsaXI	ACNNNNNCTCC	2 cut(s)	996, 1026
Bsc4I	CCNNNNNNNGG	2 cut(s)	578, 1067
Bse8I	GATNNNNATC	1 cut(s)	995
BseAI	TCCGGA	1 cut(s)	1180
BseBI	CCWGG	3 cut(s)	250, 456, 623
BseCI	ATCGAT	1 cut(s)	372
BseDI	CCNNGG	5 cut(s)	239, 248, 455, 896, 897
BseGI	GGATG	2 cut(s)	73, 520
BseJI	GATNNNNATC	1 cut(s)	995
BseLI	CCNNNNNNNGG	2 cut(s)	578, 1067
BseMII	CTCAG	3 cut(s)	404, 800, 1158
BseRI	GAGGAG	3 cut(s)	6, 412, 836
BseXI	GCAGC	1 cut(s)	220
BseYI	CCCAGC	1 cut(s)	69
BsgI	GTGCAG	2 cut(s)	219, 523
Bsh1236I	CGCG	2 cut(s)	290, 642
Bsh1285I	CGRYCG	1 cut(s)	307
BshFI	GGCC	4 cut(s)	131, 691, 923, 1114
BshNI	GGYRCC	1 cut(s)	166
BshVI	ATCGAT	1 cut(s)	372
BsiEI	CGRYCG	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	896
BsiSI	CCGG	5 cut(s)	170, 897, 965, 1136, 1181
BslFI	GGGAC	2 cut(s)	134, 796
BslI	CCNNNNNNNGG	2 cut(s)	578, 1067
BsmAI	GTCTC	2 cut(s)	90, 145
BsmBI	CGTCTC	2 cut(s)	90, 145
BsmFI	GGGAC	2 cut(s)	134, 796
BsnI	GGCC	4 cut(s)	131, 691, 923, 1114
BsoBI	CYCGRG	1 cut(s)	896
Bsp13I	TCCGGA	1 cut(s)	1180
Bsp143I	GATC	8 cut(s)	160, 261, 304, 568, 693, 912, 996, 1029
BspANI	GGCC	4 cut(s)	131, 691, 923, 1114
BspCNI	CTCAG	3 cut(s)	405, 799, 1157
BspDI	ATCGAT	1 cut(s)	372
BspEI	TCCGGA	1 cut(s)	1180
BspFNI	CGCG	2 cut(s)	290, 642
BspLI	GGNNCC	1 cut(s)	168
BspMI	ACCTGC	2 cut(s)	553, 1111
BspPI	GGATC	2 cut(s)	563, 1004
BspT107I	GGYRCC	1 cut(s)	166
BssECI	CCNNGG	5 cut(s)	239, 248, 455, 896, 897
BssMI	GATC	8 cut(s)	160, 261, 304, 568, 693, 912, 996, 1029
BssNI	GRCGYC	1 cut(s)	147
Bst2UI	CCWGG	3 cut(s)	250, 456, 623
Bst4CI	ACNGT	5 cut(s)	297, 837, 860, 1036, 1062
Bst6I	CTCTTC	1 cut(s)	641
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	542
BstDEI	CTNAG	3 cut(s)	413, 786, 1144
BstEII	GGTNACC	1 cut(s)	904
BstF5I	GGATG	2 cut(s)	73, 520
BstFNI	CGCG	2 cut(s)	290, 642
BstH2I	RGCGCY	1 cut(s)	191
BstHHI	GCGC	2 cut(s)	190, 292
BstKTI	GATC	8 cut(s)	163, 264, 307, 571, 696, 915, 999, 1032
BstMAI	GTCTC	2 cut(s)	90, 145
BstMBI	GATC	8 cut(s)	160, 261, 304, 568, 693, 912, 996, 1029
BstMCI	CGRYCG	1 cut(s)	307
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 185, 215, 451
BstNI	CCWGG	3 cut(s)	250, 456, 623
BstNSI	RCATGY	1 cut(s)	982
BstPI	GGTNACC	1 cut(s)	904
BstSCI	CCNGG	5 cut(s)	248, 454, 621, 895, 896
BstSFI	CTRYAG	1 cut(s)	293
BstUI	CGCG	2 cut(s)	290, 642
BstV1I	GCAGC	1 cut(s)	220
BstV2I	GAAGAC	2 cut(s)	1086, 1113
Bsu15I	ATCGAT	1 cut(s)	372
BsuI	GTATCC	1 cut(s)	237
BsuRI	GGCC	4 cut(s)	131, 691, 923, 1114
BsuTUI	ATCGAT	1 cut(s)	372
BtrI	CACGTC	2 cut(s)	139, 802
BtsCI	GGATG	2 cut(s)	73, 520
BveI	ACCTGC	2 cut(s)	553, 1111
Cac8I	GCNNGC	1 cut(s)	542
CfoI	GCGC	2 cut(s)	190, 292
Cfr13I	GGNCC	2 cut(s)	440, 1112
Cfr9I	CCCGGG	1 cut(s)	896
ClaI	ATCGAT	1 cut(s)	372
CseI	GACGC	1 cut(s)	631
CviAII	CATG	2 cut(s)	340, 979
DdeI	CTNAG	3 cut(s)	413, 786, 1144
DpnI	GATC	8 cut(s)	162, 263, 306, 570, 695, 914, 998, 1031
DpnII	GATC	8 cut(s)	160, 261, 304, 568, 693, 912, 996, 1029
Eam1104I	CTCTTC	1 cut(s)	641
EarI	CTCTTC	1 cut(s)	641
EciI	GGCGGA	1 cut(s)	1088
Eco47I	GGWCC	1 cut(s)	440
Eco57I	CTGAAG	1 cut(s)	632
Eco88I	CYCGRG	1 cut(s)	896
Eco91I	GGTNACC	1 cut(s)	904
EcoO65I	GGTNACC	1 cut(s)	904
EcoRI	GAATTC	3 cut(s)	383, 425, 811
EcoRII	CCWGG	3 cut(s)	248, 454, 621
Esp3I	CGTCTC	2 cut(s)	90, 145
FaeI	CATG	2 cut(s)	343, 982
FaiI	YATR	7 cut(s)	119, 185, 341, 438, 798, 980, 1052
FalI	AAGNNNNNCTT	2 cut(s)	799, 831
FaqI	GGGAC	2 cut(s)	134, 796
FatI	CATG	2 cut(s)	339, 978
FauI	CCCGC	1 cut(s)	209
Fnu4HI	GCNGC	4 cut(s)	234, 354, 357, 723
FokI	GGATG	2 cut(s)	60, 527
Fsp4HI	GCNGC	4 cut(s)	234, 354, 357, 723
FspBI	CTAG	1 cut(s)	257
GlaI	GCGC	2 cut(s)	189, 291
GluI	GCNGC	4 cut(s)	234, 354, 357, 723
GsaI	CCCAGC	1 cut(s)	73
HaeII	RGCGCY	1 cut(s)	191
HaeIII	GGCC	4 cut(s)	131, 691, 923, 1114
HapII	CCGG	5 cut(s)	170, 897, 965, 1136, 1181
HgaI	GACGC	1 cut(s)	631
HhaI	GCGC	2 cut(s)	190, 292
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	343, 982
Hin6I	GCGC	2 cut(s)	188, 290
HinP1I	GCGC	2 cut(s)	188, 290
HindIII	AAGCTT	2 cut(s)	706, 926
HinfI	GANTC	6 cut(s)	154, 226, 363, 415, 784, 1177
HpaII	CCGG	5 cut(s)	170, 897, 965, 1136, 1181
HphI	GGTGA	1 cut(s)	1135
Hpy166II	GTNNAC	4 cut(s)	136, 619, 854, 976
Hpy188III	TCNNGA	3 cut(s)	151, 158, 1181
Hpy8I	GTNNAC	4 cut(s)	136, 619, 854, 976
Hpy99I	CGWCG	2 cut(s)	149, 383
HpyAV	CCTTC	7 cut(s)	30, 45, 355, 454, 458, 656, 801
HpyCH4III	ACNGT	5 cut(s)	297, 837, 860, 1036, 1062
HpyCH4IV	ACGT	4 cut(s)	45, 138, 147, 801
HpyCH4V	TGCA	6 cut(s)	236, 540, 661, 745, 982, 1120
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 185, 215, 451
HpyF3I	CTNAG	3 cut(s)	413, 786, 1144
HpySE526I	ACGT	4 cut(s)	45, 138, 147, 801
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	343, 982
HspAI	GCGC	2 cut(s)	188, 290
Kpn2I	TCCGGA	1 cut(s)	1180
Kzo9I	GATC	8 cut(s)	160, 261, 304, 568, 693, 912, 996, 1029
LmnI	GCTCC	2 cut(s)	549, 1153
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	3 cut(s)	82, 709, 1107
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	4 cut(s)	45, 138, 147, 801
MaeIII	GTNAC	1 cut(s)	904
MalI	GATC	8 cut(s)	162, 263, 306, 570, 695, 914, 998, 1031
MboI	GATC	8 cut(s)	160, 261, 304, 568, 693, 912, 996, 1029
MboII	GAAGA	4 cut(s)	628, 1091, 1115, 1118
MluCI	AATT	7 cut(s)	383, 402, 425, 433, 599, 811, 950
MlyI	GAGTC	2 cut(s)	424, 778
MmeI	TCCRAC	5 cut(s)	168, 736, 849, 1026, 1080
MroI	TCCGGA	1 cut(s)	1180
MroXI	GAANNNNTTC	1 cut(s)	811
MseI	TTAA	8 cut(s)	104, 110, 324, 405, 735, 770, 876, 1056
MspI	CCGG	5 cut(s)	170, 897, 965, 1136, 1181
MspR9I	CCNGG	5 cut(s)	250, 456, 623, 897, 898
MvaI	CCWGG	3 cut(s)	250, 456, 623
MvnI	CGCG	2 cut(s)	290, 642
MwoI	GCNNNNNNNGC	4 cut(s)	128, 185, 215, 451
NciI	CCSGG	2 cut(s)	897, 898
NdeII	GATC	8 cut(s)	160, 261, 304, 568, 693, 912, 996, 1029
NlaIII	CATG	2 cut(s)	343, 982
NlaIV	GGNNCC	1 cut(s)	168
NmeAIII	GCCGAG	1 cut(s)	558
NspI	RCATGY	1 cut(s)	982
PaqCI	CACCTGC	1 cut(s)	1111
PcsI	WCGNNNNNNNCGW	3 cut(s)	144, 378, 384
PdmI	GAANNNNTTC	1 cut(s)	811
PfeI	GAWTC	4 cut(s)	154, 226, 363, 1177
PkrI	GCNGC	4 cut(s)	235, 355, 358, 724
Ple19I	CGATCG	1 cut(s)	307
PleI	GAGTC	2 cut(s)	423, 778
PpsI	GAGTC	2 cut(s)	423, 778
Psp6I	CCWGG	3 cut(s)	248, 454, 621
PspEI	GGTNACC	1 cut(s)	904
PspFI	CCCAGC	1 cut(s)	69
PspGI	CCWGG	3 cut(s)	248, 454, 621
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	2 cut(s)	440, 1112
PvuI	CGATCG	1 cut(s)	307
SaqAI	TTAA	8 cut(s)	104, 110, 324, 405, 735, 770, 876, 1056
SatI	GCNGC	4 cut(s)	234, 354, 357, 723
Sau3AI	GATC	8 cut(s)	160, 261, 304, 568, 693, 912, 996, 1029
Sau96I	GGNCC	2 cut(s)	440, 1112
SchI	GAGTC	2 cut(s)	424, 778
ScrFI	CCNGG	5 cut(s)	250, 456, 623, 897, 898
SfaNI	GCATC	3 cut(s)	82, 709, 1107
SfcI	CTRYAG	1 cut(s)	293
SinI	GGWCC	1 cut(s)	440
SmaI	CCCGGG	1 cut(s)	898
SmlI	CTYRAG	2 cut(s)	125, 703
SmoI	CTYRAG	2 cut(s)	125, 703
Sse9I	AATT	7 cut(s)	383, 402, 425, 433, 599, 811, 950
SspMI	CTAG	1 cut(s)	257
StyD4I	CCNGG	5 cut(s)	248, 454, 621, 895, 896
TaaI	ACNGT	5 cut(s)	297, 837, 860, 1036, 1062
TaiI	ACGT	4 cut(s)	48, 141, 150, 804
TaqI	TCGA	9 cut(s)	159, 372, 381, 387, 519, 567, 591, 603, 999
TasI	AATT	7 cut(s)	383, 402, 425, 433, 599, 811, 950
TauI	GCSGC	3 cut(s)	356, 359, 725
TfiI	GAWTC	4 cut(s)	154, 226, 363, 1177
Tru1I	TTAA	8 cut(s)	104, 110, 324, 405, 735, 770, 876, 1056
Tru9I	TTAA	8 cut(s)	104, 110, 324, 405, 735, 770, 876, 1056
TseI	GCWGC	1 cut(s)	233
TspDTI	ATGAA	2 cut(s)	239, 299
TspGWI	ACGGA	2 cut(s)	294, 643
TspMI	CCCGGG	1 cut(s)	896
VpaK11BI	GGWCC	1 cut(s)	440
XapI	RAATTY	4 cut(s)	383, 425, 599, 811
XceI	RCATGY	1 cut(s)	982
XmaI	CCCGGG	1 cut(s)	896
XmnI	GAANNNNTTC	1 cut(s)	811
XspI	CTAG	1 cut(s)	257
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.