Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011688

Physical Location & Seq

Genomic Coordinates Reverse (-)

472970 .. 475522

Gene Structure 2553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00076720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGCTCTTAAGGCCGTCCATGTCTCCGACGTCCCTAACCTCGATCACGTCCCGGAAAATGCCTCTCTTCAGCTTTACTCCACCCGCTTCTCCAAAGGTGTGGAATTTGGTCGGGTGGCATCTAGAATACCTAAGTTTCTAGTGATCGGACACAGAGGGAATGGAATGAACGCTTTACAGTCGTCTGATCGGAGAATGAGAGCCATTAAGGAAAACTCCATCATGTCGTTCAACACTGCTGCCAAATACCCTCTTGATTTTGTCGAATTTGACGTTCAGGTAACCAGAGATGGCTGCCCCGTCATTTTCCACGACGACTTCATCCTCACCGAAGATCAGGGTACTGTGTTTGAGAAGAGAATGCCTGAATTGTGTTTGACGGAGTTCCTAAATTATGGTCCACAAAGAGAGGCAGGAAAGGATGGAAAGCCTTTGTTAAGGAAAAACAAAGACGGTCAAATTGTAAGATGGGAGGTTGAAAAAGATGATTCCCTCTGTACCCTCCAAGAAGTTTTTGAGAAGGTCGAACCTTCTGTTGGCTTCAACATTGAGATCAAATTCGACGACTACATTGTTTACCAGGAGGACTATCTCGTCCGTGTCCTTCAATCCATCTTGAAAGTTGTGTTTGAGTACGCCAAAGATAGGCCTATTGTATTCTCGTCATTCCAACCAGATGCAGCGCTCCTTGTTAAGAAGTTGCAGAACACCTACCCTGTCTTTTTCTTGACAAATGGTGGGAATGAGATTTACTGTGATGTGAGAAGGAATTCTTTGGATGAAGCAATAAGGGTGTGCTTAGAGGGTGGTTTGGAAGGTATTGTATCGGAGGTGAAAGGTGTTTTCCGAAATCCTGGGGCGGTAACCAAGATCAAGGAGTCCAAGCTTTCACTTCTAACCTATGGCAAACTAAATAATGTTGCCGAAGCAGTATACATGCAACACCTAATGGGAATTGAGGGAGTGATTGTGGATTTTGTGGAAGAGATCACAGAAGCAGTGTGTGATATGATAAAGCCATCGGCGGCCACGGAAGAAGACGGGGATGATTTGTTGGAAGGGGACGGGAAGATGCAATTGAAATCAAAGCCGGAGTTCTCTCAGAGGGAGCTTTCCTTTCTGTTGAAGCTCATTCCAGAATTGATACAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009536 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0046872 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

384

Amino Acids

43.41

Weight (kDa)

5.03

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	51 - 328	2.7e-45	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02040
fragaria_vesca	FvH4_6g53990 FvH4_6g53990
malus_domestica	MD09G1006500.v1.1 MD17G1010400.v1.1
prunus_persica	Prupe.3G310500_v2.0.a1 Prupe.3G310500_v2.0.a1
pyrus_communis	pycom111g00480 pycom17g00500
rosa_chinensis	RchiOBHm_Chr2g0176161
rosa_laevigata	RLG00000022386
rosa_multiflora	Rmu_sc0000405.1_g000006
rosa_roxburghii	Rroxscaffold_2G00076720
rosa_rugosa	Rorug02G0591200
rosa_samantha	Rh2AG669800 Rh2BG681400 Rh2CG644300 Rh2DG695100
rosa_wichuraiana	Rw2G054950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	593
AatII	GACGTC	1 cut(s)	33
AccI	GTMKAC	1 cut(s)	933
AciI	CCGC	3 cut(s)	85, 860, 1025
AcoI	YGGCCR	1 cut(s)	1026
AcsI	RAATTY	4 cut(s)	104, 266, 557, 769
AcuI	CTGAAG	1 cut(s)	53
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	3 cut(s)	343, 499, 635
AfeI	AGCGCT	1 cut(s)	684
AfiI	CCNNNNNNNGG	2 cut(s)	536, 645
AflII	CTTAAG	1 cut(s)	8
AgsI	TTSAA	7 cut(s)	232, 479, 544, 608, 619, 1081, 1126
AjiI	CACGTC	1 cut(s)	49
AjnI	CCWGG	2 cut(s)	579, 853
AjuI	GAANNNNNNNTTGG	2 cut(s)	519, 551
AluBI	AGCT	4 cut(s)	73, 886, 1111, 1129
AluI	AGCT	4 cut(s)	73, 886, 1111, 1129
Alw26I	GTCTC	1 cut(s)	28
Aor51HI	AGCGCT	1 cut(s)	684
AoxI	GGCC	3 cut(s)	12, 647, 1026
ApeKI	GCWGC	3 cut(s)	239, 294, 680
ApoI	RAATTY	4 cut(s)	104, 266, 557, 769
Asp700I	GAANNNNTTC	1 cut(s)	769
AspLEI	GCGC	1 cut(s)	685
AspS9I	GGNCC	1 cut(s)	398
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	319, 844
AvaII	GGWCC	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	1044
BbvI	GCAGC	3 cut(s)	226, 281, 692
BccI	CCATC	6 cut(s)	227, 284, 416, 462, 620, 1027
BciT130I	CCWGG	2 cut(s)	581, 855
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	28
BfaI	CTAG	2 cut(s)	123, 140
BfoI	RGCGCY	1 cut(s)	686
BfrI	CTTAAG	1 cut(s)	8
BisI	GCNGC	4 cut(s)	240, 295, 681, 1026
BlsI	GCNGC	4 cut(s)	241, 296, 682, 1027
Bme1390I	CCNGG	3 cut(s)	53, 581, 855
Bme18I	GGWCC	1 cut(s)	398
BmgBI	CACGTC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	398
BmrFI	CCNGG	3 cut(s)	53, 581, 855
BmsI	GCATC	3 cut(s)	128, 667, 1062
BpiI	GAAGAC	1 cut(s)	1044
BpuMI	CCSGG	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	854, 1029
BsaXI	ACNNNNNCTCC	2 cut(s)	954, 984
Bsc4I	CCNNNNNNNGG	2 cut(s)	536, 645
BseBI	CCWGG	2 cut(s)	581, 855
BseDI	CCNNGG	2 cut(s)	854, 1029
BseGI	GGATG	4 cut(s)	321, 427, 784, 1051
BseLI	CCNNNNNNNGG	2 cut(s)	536, 645
BseMII	CTCAG	1 cut(s)	1115
BseXI	GCAGC	3 cut(s)	226, 281, 692
BshFI	GGCC	3 cut(s)	14, 649, 1028
BsiSI	CCGG	2 cut(s)	53, 1091
BslFI	GGGAC	3 cut(s)	17, 35, 1076
BslI	CCNNNNNNNGG	2 cut(s)	536, 645
BsmAI	GTCTC	1 cut(s)	28
BsmFI	GGGAC	3 cut(s)	17, 35, 1076
BsmI	GAATGC	1 cut(s)	366
BsnI	GGCC	3 cut(s)	14, 649, 1028
Bsp143I	GATC	7 cut(s)	43, 144, 187, 334, 552, 870, 987
BspACI	CCGC	3 cut(s)	85, 860, 1025
BspANI	GGCC	3 cut(s)	14, 649, 1028
BspCNI	CTCAG	1 cut(s)	1114
BspTI	CTTAAG	1 cut(s)	8
BssECI	CCNNGG	2 cut(s)	854, 1029
BssMI	GATC	7 cut(s)	43, 144, 187, 334, 552, 870, 987
BssNAI	GTATAC	1 cut(s)	934
BssNI	GRCGYC	1 cut(s)	30
Bst1107I	GTATAC	1 cut(s)	934
Bst2UI	CCWGG	2 cut(s)	581, 855
Bst4CI	ACNGT	4 cut(s)	180, 346, 455, 755
Bst6I	CTCTTC	3 cut(s)	72, 350, 978
BstACI	GRCGYC	1 cut(s)	30
BstAFI	CTTAAG	1 cut(s)	8
BstDEI	CTNAG	3 cut(s)	132, 799, 1101
BstDSI	CCRYGG	1 cut(s)	1029
BstEII	GGTNACC	2 cut(s)	280, 862
BstF5I	GGATG	4 cut(s)	321, 427, 784, 1051
BstH2I	RGCGCY	1 cut(s)	686
BstHHI	GCGC	1 cut(s)	685
BstKTI	GATC	7 cut(s)	46, 147, 190, 337, 555, 873, 990
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	7 cut(s)	43, 144, 187, 334, 552, 870, 987
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	581, 855
BstNSI	RCATGY	1 cut(s)	940
BstPI	GGTNACC	2 cut(s)	280, 862
BstSCI	CCNGG	3 cut(s)	51, 579, 853
BstV1I	GCAGC	3 cut(s)	226, 281, 692
BstV2I	GAAGAC	1 cut(s)	1044
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstZ17I	GTATAC	1 cut(s)	934
BsuRI	GGCC	3 cut(s)	14, 649, 1028
BtgI	CCRYGG	1 cut(s)	1029
BtrI	CACGTC	1 cut(s)	49
BtsCI	GGATG	4 cut(s)	321, 427, 784, 1051
BtsI	GCAGTG	2 cut(s)	234, 1005
BtsIMutI	CAGTG	2 cut(s)	234, 1005
CfoI	GCGC	1 cut(s)	685
Cfr13I	GGNCC	1 cut(s)	398
Csp6I	GTAC	3 cut(s)	342, 498, 634
CviAII	CATG	3 cut(s)	20, 223, 937
CviQI	GTAC	3 cut(s)	342, 498, 634
DdeI	CTNAG	3 cut(s)	132, 799, 1101
DpnI	GATC	7 cut(s)	45, 146, 189, 336, 554, 872, 989
DpnII	GATC	7 cut(s)	43, 144, 187, 334, 552, 870, 987
DrdI	GACNNNNNNGTC	1 cut(s)	593
DseDI	GACNNNNNNGTC	1 cut(s)	593
EaeI	YGGCCR	1 cut(s)	1026
Eam1104I	CTCTTC	3 cut(s)	72, 350, 978
EarI	CTCTTC	3 cut(s)	72, 350, 978
Eco147I	AGGCCT	1 cut(s)	649
Eco47I	GGWCC	1 cut(s)	398
Eco47III	AGCGCT	1 cut(s)	684
Eco57I	CTGAAG	1 cut(s)	53
Eco91I	GGTNACC	2 cut(s)	280, 862
EcoO65I	GGTNACC	2 cut(s)	280, 862
EcoRI	GAATTC	1 cut(s)	769
EcoRII	CCWGG	2 cut(s)	579, 853
FaeI	CATG	3 cut(s)	23, 226, 940
FaiI	YATR	7 cut(s)	21, 224, 396, 903, 934, 938, 1010
FalI	AAGNNNNNCTT	2 cut(s)	757, 789
FaqI	GGGAC	3 cut(s)	17, 35, 1076
FatI	CATG	3 cut(s)	19, 222, 936
FauI	CCCGC	1 cut(s)	92
FblI	GTMKAC	1 cut(s)	933
Fnu4HI	GCNGC	4 cut(s)	240, 295, 681, 1026
FokI	GGATG	4 cut(s)	308, 434, 791, 1058
Fsp4HI	GCNGC	4 cut(s)	240, 295, 681, 1026
FspBI	CTAG	2 cut(s)	123, 140
GlaI	GCGC	1 cut(s)	684
GluI	GCNGC	4 cut(s)	240, 295, 681, 1026
HaeII	RGCGCY	1 cut(s)	686
HaeIII	GGCC	3 cut(s)	14, 649, 1028
HapII	CCGG	2 cut(s)	53, 1091
HhaI	GCGC	1 cut(s)	685
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	3 cut(s)	23, 226, 940
Hin6I	GCGC	1 cut(s)	683
HinP1I	GCGC	1 cut(s)	683
HindIII	AAGCTT	1 cut(s)	884
HinfI	GANTC	2 cut(s)	488, 878
HpaII	CCGG	2 cut(s)	53, 1091
HphI	GGTGA	2 cut(s)	319, 844
Hpy166II	GTNNAC	3 cut(s)	401, 577, 934
Hpy188I	TCNGA	8 cut(s)	28, 149, 187, 192, 829, 848, 1104, 1154
Hpy188III	TCNNGA	5 cut(s)	123, 254, 616, 727, 1136
Hpy8I	GTNNAC	3 cut(s)	401, 577, 934
Hpy99I	CGWCG	3 cut(s)	32, 317, 566
HpyAV	CCTTC	6 cut(s)	514, 540, 614, 759, 809, 1052
HpyCH4III	ACNGT	4 cut(s)	180, 346, 455, 755
HpyCH4IV	ACGT	3 cut(s)	30, 48, 273
HpyCH4V	TGCA	4 cut(s)	680, 703, 940, 1075
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	3 cut(s)	132, 799, 1101
HpySE526I	ACGT	3 cut(s)	30, 48, 273
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	3 cut(s)	23, 226, 940
HspAI	GCGC	1 cut(s)	683
Kzo9I	GATC	7 cut(s)	43, 144, 187, 334, 552, 870, 987
LmnI	GCTCC	2 cut(s)	690, 1108
Lsp1109I	GCAGC	3 cut(s)	226, 281, 692
LweI	GCATC	3 cut(s)	128, 667, 1062
MaeI	CTAG	2 cut(s)	123, 140
MaeII	ACGT	3 cut(s)	30, 48, 273
MaeIII	GTNAC	2 cut(s)	280, 862
MalI	GATC	7 cut(s)	45, 146, 189, 336, 554, 872, 989
MboI	GATC	7 cut(s)	43, 144, 187, 334, 552, 870, 987
MboII	GAAGA	7 cut(s)	59, 344, 367, 995, 1046, 1049, 1081
MfeI	CAATTG	1 cut(s)	1076
MlyI	GAGTC	1 cut(s)	887
MmeI	TCCRAC	3 cut(s)	51, 694, 1035
MroXI	GAANNNNTTC	1 cut(s)	769
MseI	TTAA	4 cut(s)	9, 207, 437, 693
MspCI	CTTAAG	1 cut(s)	8
MspI	CCGG	2 cut(s)	53, 1091
MspR9I	CCNGG	3 cut(s)	53, 581, 855
MunI	CAATTG	1 cut(s)	1076
Mva1269I	GAATGC	1 cut(s)	366
MvaI	CCWGG	2 cut(s)	581, 855
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	7 cut(s)	43, 144, 187, 334, 552, 870, 987
NlaIII	CATG	3 cut(s)	23, 226, 940
NspI	RCATGY	1 cut(s)	940
PceI	AGGCCT	1 cut(s)	649
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PctI	GAATGC	1 cut(s)	366
PdmI	GAANNNNTTC	1 cut(s)	769
PfeI	GAWTC	1 cut(s)	488
PfoI	TCCNGGA	1 cut(s)	51
PkrI	GCNGC	4 cut(s)	241, 296, 682, 1027
PleI	GAGTC	1 cut(s)	886
PpsI	GAGTC	1 cut(s)	886
Psp6I	CCWGG	2 cut(s)	579, 853
PspEI	GGTNACC	2 cut(s)	280, 862
PspGI	CCWGG	2 cut(s)	579, 853
PspPI	GGNCC	1 cut(s)	398
RsaI	GTAC	3 cut(s)	343, 499, 635
RsaNI	GTAC	3 cut(s)	342, 498, 634
SaqAI	TTAA	4 cut(s)	9, 207, 437, 693
SatI	GCNGC	4 cut(s)	240, 295, 681, 1026
Sau3AI	GATC	7 cut(s)	43, 144, 187, 334, 552, 870, 987
Sau96I	GGNCC	1 cut(s)	398
SchI	GAGTC	1 cut(s)	887
ScrFI	CCNGG	3 cut(s)	53, 581, 855
SfaNI	GCATC	3 cut(s)	128, 667, 1062
SinI	GGWCC	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
SseBI	AGGCCT	1 cut(s)	649
SsiI	CCGC	3 cut(s)	85, 860, 1025
SspMI	CTAG	2 cut(s)	123, 140
StuI	AGGCCT	1 cut(s)	649
StyD4I	CCNGG	3 cut(s)	51, 579, 853
TaaI	ACNGT	4 cut(s)	180, 346, 455, 755
TaiI	ACGT	3 cut(s)	33, 51, 276
TaqI	TCGA	4 cut(s)	42, 264, 525, 561
TauI	GCSGC	1 cut(s)	1028
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	4 cut(s)	9, 207, 437, 693
Tru9I	TTAA	4 cut(s)	9, 207, 437, 693
TscAI	CASTG	2 cut(s)	241, 1005
TseI	GCWGC	3 cut(s)	239, 294, 680
TspDTI	ATGAA	3 cut(s)	182, 310, 795
TspGWI	ACGGA	3 cut(s)	395, 587, 1046
TspRI	CASTG	2 cut(s)	241, 1005
Vha464I	CTTAAG	1 cut(s)	8
VpaK11BI	GGWCC	1 cut(s)	398
XapI	RAATTY	4 cut(s)	104, 266, 557, 769
XbaI	TCTAGA	1 cut(s)	122
XceI	RCATGY	1 cut(s)	940
XmiI	GTMKAC	1 cut(s)	933
XmnI	GAANNNNTTC	1 cut(s)	769
XspI	CTAG	2 cut(s)	123, 140
ZraI	GACGTC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.