Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0011688

Physical Location & Seq

Genomic Coordinates Reverse (-)

475501 .. 478080

Gene Structure 2580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1006500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGCTCTCAAGGCCGTCCACGTCTCCGACGTCCCGAATCTCGATCAGGTGCCGGAAAATGCTTCTATGGCGCTCTACTCCTTCCGCTTCGCCAAAGGTGCGGAGATGAATCGGGCGGCACCGCGGATACCCAGGTTTCTAGTGATCGGACACAGAGGGAACGGAATGAACGCGCTACAGTCGTCCGATCGGAGAATGAGAGCCATTAAAGAGAACTCCATCATGTCCTTCAACGCCGCCGCCAGATTCCCCATCGATTTCGTCGAATTCGATGTTCAGGTAACCAAAGATGACTGTCCGGTCATTTTCCACGACGACTTCATCCTCTCCGAAGAAAATGGGACTGTGTTTCAGAGGAGAATTAACGAACTGAGTCTGTCCGAATTCCTAAATTATGGTCCGCAAAGAGAGCCAGGGAAGGAAGGAAAGACACTGTTGAGGAAAACCAAAGATGGTAAAATAGTAAAATGGGATGTCGAAAATGATGACCCCCTCTGCACGCTCCAAGAGGCCTTTGAGCAGGTCGATCCGTCTCTCGGCTTCAACATCGAGCTGAAATTCGATGATAACATTGTTTACCAGGAGGACTATCTCTTCCGCGTCCTTCAGTCCGTCTTCCAAGTGGTGTTTGAGTGTGGCAGAGATAGGCCGATCATTTTCTCAAGCTTCCAACCTGATGCGGCCCTGTTGGTTAAAAAGTTGCAGAACACCTACCCTGTCTTTTTCTTAACAAATGGTGGGACTGAGCTTTACTATGATGTGCGAAGGAATTCTTTGGAGGAGGCGATAAAACTTTGTTCGGAGGGTGGTTTACAAGGTATTGTGTCGGAGGTTAAAGGCGTGTTGAGAAATCCCGGGGCGGTAACCAAGATCAAAGAGGCCAAGCTTTCACTCCTAACTTACGGCAAATTGAACAATGTGCCGGAAGCAGTTTACATGCAATACCTAATGGGGGTCGAGGGAGTGATAGTGGATTTTGTGAAAGAGATCACGGAGGCGGTGTCGGATATGATTAAGCCATTAGGTGGGGCGGAGGAAGACGGGGGGAAGCGTTTGTTGGAAGAAGACAGGCCAATGCAGGTGAAATCAAAGCCGGAGTTCTCAGAGAGGGAGCTTTCTTTTCTATTGAAACTGATTCCGGAGTTGATACAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009536 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0046872 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

386

Amino Acids

43.55

Weight (kDa)

5.09

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	51 - 328	3e-44	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02040
fragaria_vesca	FvH4_6g53990 FvH4_6g53990
malus_domestica	MD09G1006500.v1.1 MD17G1010400.v1.1
prunus_persica	Prupe.3G310500_v2.0.a1 Prupe.3G310500_v2.0.a1
pyrus_communis	pycom111g00480 pycom17g00500
rosa_chinensis	RchiOBHm_Chr2g0176161
rosa_laevigata	RLG00000022386
rosa_multiflora	Rmu_sc0000405.1_g000006
rosa_roxburghii	Rroxscaffold_2G00076720
rosa_rugosa	Rorug02G0591200
rosa_samantha	Rh2AG669800 Rh2BG681400 Rh2CG644300 Rh2DG695100
rosa_wichuraiana	Rw2G054950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1069
AasI	GACNNNNNNGTC	1 cut(s)	299
AatII	GACGTC	1 cut(s)	33
Acc36I	ACCTGC	2 cut(s)	511, 1069
AccB1I	GGYRCC	2 cut(s)	49, 118
AccB7I	CCANNNNNTGG	1 cut(s)	1025
AccII	CGCG	3 cut(s)	124, 173, 600
AccIII	TCCGGA	1 cut(s)	1138
AclWI	GGATC	1 cut(s)	521
AcsI	RAATTY	4 cut(s)	266, 383, 557, 769
AcuI	CTGAAG	1 cut(s)	590
AcyI	GRCGYC	1 cut(s)	30
AfiI	CCNNNNNNNGG	3 cut(s)	536, 952, 1025
AgsI	TTSAA	4 cut(s)	232, 544, 913, 1129
AjiI	CACGTC	1 cut(s)	22
AjnI	CCWGG	3 cut(s)	131, 412, 579
AjuI	GAANNNNNNNTTGG	2 cut(s)	1040, 1072
AluBI	AGCT	6 cut(s)	553, 666, 748, 886, 1114, 1153
AluI	AGCT	6 cut(s)	553, 666, 748, 886, 1114, 1153
Alw26I	GTCTC	2 cut(s)	28, 537
AlwI	GGATC	1 cut(s)	521
Ama87I	CYCGRG	1 cut(s)	854
Aor13HI	TCCGGA	1 cut(s)	1138
AoxI	GGCC	6 cut(s)	12, 510, 647, 681, 879, 1070
ApoI	RAATTY	4 cut(s)	266, 383, 557, 769
Asp700I	GAANNNNTTC	1 cut(s)	769
AspLEI	GCGC	2 cut(s)	73, 175
AspS9I	GGNCC	2 cut(s)	398, 682
AsuC2I	CCSGG	2 cut(s)	855, 856
AsuHPI	GGTGA	1 cut(s)	1093
AvaI	CYCGRG	1 cut(s)	854
AvaII	GGWCC	1 cut(s)	398
BaeI	ACNNNNGTAYC	2 cut(s)	119, 152
BanI	GGYRCC	2 cut(s)	49, 118
BbsI	GAAGAC	3 cut(s)	607, 1044, 1071
BccI	CCATC	3 cut(s)	227, 260, 446
BceAI	ACGGC	1 cut(s)	919
BciT130I	CCWGG	3 cut(s)	133, 414, 581
BciVI	GTATCC	1 cut(s)	120
BcnI	CCSGG	2 cut(s)	855, 856
BcoDI	GTCTC	2 cut(s)	28, 537
BfaI	CTAG	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	176
BfoI	RGCGCY	1 cut(s)	74
BfuAI	ACCTGC	2 cut(s)	511, 1069
BfuI	GTATCC	1 cut(s)	120
BisI	GCNGC	4 cut(s)	117, 237, 240, 681
BlsI	GCNGC	4 cut(s)	118, 238, 241, 682
Bme1390I	CCNGG	5 cut(s)	133, 414, 581, 855, 856
Bme18I	GGWCC	1 cut(s)	398
BmeT110I	CYCGRG	1 cut(s)	854
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	2 cut(s)	398, 682
BmiI	GGNNCC	2 cut(s)	51, 120
BmrFI	CCNGG	5 cut(s)	133, 414, 581, 855, 856
BmsI	GCATC	1 cut(s)	667
BpiI	GAAGAC	3 cut(s)	607, 1044, 1071
BpuEI	CTTGAG	1 cut(s)	646
BpuMI	CCSGG	2 cut(s)	855, 856
Bsa29I	ATCGAT	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	5 cut(s)	122, 131, 413, 854, 855
BsaWI	WCCGGW	2 cut(s)	298, 1138
BsaXI	ACNNNNNCTCC	4 cut(s)	954, 984, 986, 1016
Bsc4I	CCNNNNNNNGG	3 cut(s)	536, 952, 1025
BseAI	TCCGGA	1 cut(s)	1138
BseBI	CCWGG	3 cut(s)	133, 414, 581
BseCI	ATCGAT	1 cut(s)	255
BseDI	CCNNGG	5 cut(s)	122, 131, 413, 854, 855
BseGI	GGATG	2 cut(s)	321, 478
BseLI	CCNNNNNNNGG	3 cut(s)	536, 952, 1025
BseMII	CTCAG	3 cut(s)	362, 735, 1116
BseRI	GAGGAG	2 cut(s)	370, 794
BsgI	GTGCAG	1 cut(s)	481
Bsh1236I	CGCG	3 cut(s)	124, 173, 600
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	6 cut(s)	14, 512, 649, 683, 881, 1072
BshNI	GGYRCC	2 cut(s)	49, 118
BshVI	ATCGAT	1 cut(s)	255
BsiEI	CGRYCG	1 cut(s)	190
BsiHKCI	CYCGRG	1 cut(s)	854
BsiSI	CCGG	6 cut(s)	53, 299, 855, 923, 1094, 1139
BslFI	GGGAC	3 cut(s)	17, 355, 754
BslI	CCNNNNNNNGG	3 cut(s)	536, 952, 1025
BsmAI	GTCTC	2 cut(s)	28, 537
BsmBI	CGTCTC	2 cut(s)	28, 537
BsmFI	GGGAC	3 cut(s)	17, 355, 754
BsnI	GGCC	6 cut(s)	14, 512, 649, 683, 881, 1072
BsoBI	CYCGRG	1 cut(s)	854
Bsp13I	TCCGGA	1 cut(s)	1138
Bsp143I	GATC	7 cut(s)	43, 144, 187, 526, 651, 870, 987
BspANI	GGCC	6 cut(s)	14, 512, 649, 683, 881, 1072
BspCNI	CTCAG	3 cut(s)	363, 736, 1115
BspDI	ATCGAT	1 cut(s)	255
BspEI	TCCGGA	1 cut(s)	1138
BspFNI	CGCG	3 cut(s)	124, 173, 600
BspLI	GGNNCC	2 cut(s)	51, 120
BspMI	ACCTGC	2 cut(s)	511, 1069
BspPI	GGATC	1 cut(s)	521
BspT107I	GGYRCC	2 cut(s)	49, 118
BssECI	CCNNGG	5 cut(s)	122, 131, 413, 854, 855
BssMI	GATC	7 cut(s)	43, 144, 187, 526, 651, 870, 987
BssNI	GRCGYC	1 cut(s)	30
Bst2UI	CCWGG	3 cut(s)	133, 414, 581
Bst4CI	ACNGT	4 cut(s)	180, 296, 346, 435
Bst6I	CTCTTC	1 cut(s)	599
BstACI	GRCGYC	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	500
BstDEI	CTNAG	3 cut(s)	371, 744, 1102
BstDSI	CCRYGG	1 cut(s)	122
BstEII	GGTNACC	2 cut(s)	280, 862
BstF5I	GGATG	2 cut(s)	321, 478
BstFNI	CGCG	3 cut(s)	124, 173, 600
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	2 cut(s)	73, 175
BstKTI	GATC	7 cut(s)	46, 147, 190, 529, 654, 873, 990
BstMAI	GTCTC	2 cut(s)	28, 537
BstMBI	GATC	7 cut(s)	43, 144, 187, 526, 651, 870, 987
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 68, 98, 409
BstNI	CCWGG	3 cut(s)	133, 414, 581
BstNSI	RCATGY	1 cut(s)	940
BstPI	GGTNACC	2 cut(s)	280, 862
BstSCI	CCNGG	5 cut(s)	131, 412, 579, 853, 854
BstSFI	CTRYAG	1 cut(s)	176
BstUI	CGCG	3 cut(s)	124, 173, 600
BstV2I	GAAGAC	3 cut(s)	607, 1044, 1071
Bsu15I	ATCGAT	1 cut(s)	255
BsuI	GTATCC	1 cut(s)	120
BsuRI	GGCC	6 cut(s)	14, 512, 649, 683, 881, 1072
BsuTUI	ATCGAT	1 cut(s)	255
BtgI	CCRYGG	1 cut(s)	122
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	2 cut(s)	321, 478
BtsIMutI	CAGTG	1 cut(s)	431
BveI	ACCTGC	2 cut(s)	511, 1069
Cac8I	GCNNGC	1 cut(s)	500
CfoI	GCGC	2 cut(s)	73, 175
Cfr13I	GGNCC	2 cut(s)	398, 682
Cfr42I	CCGCGG	1 cut(s)	125
Cfr9I	CCCGGG	1 cut(s)	854
ClaI	ATCGAT	1 cut(s)	255
CseI	GACGC	1 cut(s)	589
CviAII	CATG	2 cut(s)	223, 937
DdeI	CTNAG	3 cut(s)	371, 744, 1102
DpnI	GATC	7 cut(s)	45, 146, 189, 528, 653, 872, 989
DpnII	GATC	7 cut(s)	43, 144, 187, 526, 651, 870, 987
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
Eam1104I	CTCTTC	1 cut(s)	599
EarI	CTCTTC	1 cut(s)	599
EciI	GGCGGA	1 cut(s)	1046
Eco147I	AGGCCT	1 cut(s)	512
Eco47I	GGWCC	1 cut(s)	398
Eco57I	CTGAAG	1 cut(s)	590
Eco88I	CYCGRG	1 cut(s)	854
Eco91I	GGTNACC	2 cut(s)	280, 862
EcoO65I	GGTNACC	2 cut(s)	280, 862
EcoRI	GAATTC	3 cut(s)	266, 383, 769
EcoRII	CCWGG	3 cut(s)	131, 412, 579
Esp3I	CGTCTC	2 cut(s)	28, 537
FaeI	CATG	2 cut(s)	226, 940
FaiI	YATR	6 cut(s)	68, 224, 396, 756, 938, 1010
FalI	AAGNNNNNCTT	2 cut(s)	757, 789
FaqI	GGGAC	3 cut(s)	17, 355, 754
FatI	CATG	2 cut(s)	222, 936
Fnu4HI	GCNGC	4 cut(s)	117, 237, 240, 681
FokI	GGATG	2 cut(s)	308, 485
Fsp4HI	GCNGC	4 cut(s)	117, 237, 240, 681
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	2 cut(s)	72, 174
GluI	GCNGC	4 cut(s)	117, 237, 240, 681
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	6 cut(s)	14, 512, 649, 683, 881, 1072
HapII	CCGG	6 cut(s)	53, 299, 855, 923, 1094, 1139
HgaI	GACGC	1 cut(s)	589
HhaI	GCGC	2 cut(s)	73, 175
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	226, 940
Hin6I	GCGC	2 cut(s)	71, 173
HinP1I	GCGC	2 cut(s)	71, 173
HindIII	AAGCTT	2 cut(s)	664, 884
HinfI	GANTC	5 cut(s)	37, 109, 246, 373, 1135
HpaII	CCGG	6 cut(s)	53, 299, 855, 923, 1094, 1139
HphI	GGTGA	1 cut(s)	1093
Hpy166II	GTNNAC	4 cut(s)	19, 577, 812, 934
Hpy188III	TCNNGA	3 cut(s)	34, 41, 1139
Hpy8I	GTNNAC	4 cut(s)	19, 577, 812, 934
Hpy99I	CGWCG	3 cut(s)	32, 266, 317
HpyAV	CCTTC	6 cut(s)	91, 238, 412, 416, 614, 759
HpyCH4III	ACNGT	4 cut(s)	180, 296, 346, 435
HpyCH4IV	ACGT	2 cut(s)	21, 30
HpyCH4V	TGCA	4 cut(s)	498, 703, 940, 1078
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 68, 98, 409
HpyF3I	CTNAG	3 cut(s)	371, 744, 1102
HpySE526I	ACGT	2 cut(s)	21, 30
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	226, 940
HspAI	GCGC	2 cut(s)	71, 173
Kpn2I	TCCGGA	1 cut(s)	1138
KspI	CCGCGG	1 cut(s)	125
Kzo9I	GATC	7 cut(s)	43, 144, 187, 526, 651, 870, 987
LmnI	GCTCC	2 cut(s)	507, 1111
LweI	GCATC	1 cut(s)	667
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	2 cut(s)	21, 30
MaeIII	GTNAC	2 cut(s)	280, 862
MalI	GATC	7 cut(s)	45, 146, 189, 528, 653, 872, 989
MboI	GATC	7 cut(s)	43, 144, 187, 526, 651, 870, 987
MboII	GAAGA	6 cut(s)	344, 586, 607, 1049, 1073, 1076
MluCI	AATT	7 cut(s)	266, 360, 383, 391, 557, 769, 908
MlyI	GAGTC	1 cut(s)	382
MmeI	TCCRAC	5 cut(s)	51, 694, 807, 984, 1038
MroI	TCCGGA	1 cut(s)	1138
MroXI	GAANNNNTTC	1 cut(s)	769
MseI	TTAA	6 cut(s)	207, 363, 693, 728, 834, 1014
MspA1I	CMGCKG	1 cut(s)	124
MspI	CCGG	6 cut(s)	53, 299, 855, 923, 1094, 1139
MspR9I	CCNGG	5 cut(s)	133, 414, 581, 855, 856
MvaI	CCWGG	3 cut(s)	133, 414, 581
MvnI	CGCG	3 cut(s)	124, 173, 600
MwoI	GCNNNNNNNGC	4 cut(s)	11, 68, 98, 409
NciI	CCSGG	2 cut(s)	855, 856
NdeII	GATC	7 cut(s)	43, 144, 187, 526, 651, 870, 987
NlaIII	CATG	2 cut(s)	226, 940
NlaIV	GGNNCC	2 cut(s)	51, 120
NmeAIII	GCCGAG	1 cut(s)	516
NspI	RCATGY	1 cut(s)	940
PaqCI	CACCTGC	1 cut(s)	1069
PceI	AGGCCT	1 cut(s)	512
PcsI	WCGNNNNNNNCGW	3 cut(s)	27, 261, 267
PdmI	GAANNNNTTC	1 cut(s)	769
PfeI	GAWTC	4 cut(s)	37, 109, 246, 1135
PflMI	CCANNNNNTGG	1 cut(s)	1025
PkrI	GCNGC	4 cut(s)	118, 238, 241, 682
Ple19I	CGATCG	1 cut(s)	190
PleI	GAGTC	1 cut(s)	381
PpsI	GAGTC	1 cut(s)	381
Psp6I	CCWGG	3 cut(s)	131, 412, 579
PspEI	GGTNACC	2 cut(s)	280, 862
PspGI	CCWGG	3 cut(s)	131, 412, 579
PspN4I	GGNNCC	2 cut(s)	51, 120
PspPI	GGNCC	2 cut(s)	398, 682
PvuI	CGATCG	1 cut(s)	190
SacII	CCGCGG	1 cut(s)	125
SaqAI	TTAA	6 cut(s)	207, 363, 693, 728, 834, 1014
SatI	GCNGC	4 cut(s)	117, 237, 240, 681
Sau3AI	GATC	7 cut(s)	43, 144, 187, 526, 651, 870, 987
Sau96I	GGNCC	2 cut(s)	398, 682
SchI	GAGTC	1 cut(s)	382
ScrFI	CCNGG	5 cut(s)	133, 414, 581, 855, 856
SfaNI	GCATC	1 cut(s)	667
SfcI	CTRYAG	1 cut(s)	176
Sfr303I	CCGCGG	1 cut(s)	125
SgrBI	CCGCGG	1 cut(s)	125
SinI	GGWCC	1 cut(s)	398
SmaI	CCCGGG	1 cut(s)	856
SmlI	CTYRAG	2 cut(s)	8, 661
SmoI	CTYRAG	2 cut(s)	8, 661
Sse9I	AATT	7 cut(s)	266, 360, 383, 391, 557, 769, 908
SseBI	AGGCCT	1 cut(s)	512
SspMI	CTAG	1 cut(s)	140
StuI	AGGCCT	1 cut(s)	512
StyD4I	CCNGG	5 cut(s)	131, 412, 579, 853, 854
TaaI	ACNGT	4 cut(s)	180, 296, 346, 435
TaiI	ACGT	2 cut(s)	24, 33
TaqI	TCGA	9 cut(s)	42, 255, 264, 270, 477, 525, 549, 561, 957
TasI	AATT	7 cut(s)	266, 360, 383, 391, 557, 769, 908
TauI	GCSGC	4 cut(s)	119, 239, 242, 683
TfiI	GAWTC	4 cut(s)	37, 109, 246, 1135
Tru1I	TTAA	6 cut(s)	207, 363, 693, 728, 834, 1014
Tru9I	TTAA	6 cut(s)	207, 363, 693, 728, 834, 1014
TscAI	CASTG	1 cut(s)	438
TspDTI	ATGAA	3 cut(s)	122, 182, 310
TspGWI	ACGGA	4 cut(s)	177, 519, 601, 1007
TspMI	CCCGGG	1 cut(s)	854
TspRI	CASTG	1 cut(s)	438
Van91I	CCANNNNNTGG	1 cut(s)	1025
VpaK11BI	GGWCC	1 cut(s)	398
XapI	RAATTY	4 cut(s)	266, 383, 557, 769
XceI	RCATGY	1 cut(s)	940
XmaI	CCCGGG	1 cut(s)	854
XmnI	GAANNNNTTC	1 cut(s)	769
XspI	CTAG	1 cut(s)	140
ZraI	GACGTC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.