Rh2CG644300

Glycerophosphodiester phosphodiesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0011688
Physical Location & Seq
Forward (+)
81496307 .. 81499093
2787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG644300.1

Sequence Viewer

Length: 1068 bp
ATGTACGTAGGTGTGGAATTTGGTCGGGTGGCATCGAGAATACCTAAGTTTCTAGTGATCGGACACAGAGGGAATGGAATGAACGCTTTACAGTCGTCTGATCGGAGAATGAGAGCCATTAAGGAAAACTCCATCATGTCGTTCAACACTGCTGCCAAATACCCTCTTGATTTTGTGGAATTTGACGTTCAGGTAACCAAAGATGGCTGCCCCGTCATTTTCCACGACGACTTCATCCTCACCGAAGATCAGGGTACTGTGTTTGAGAAGAGAATACCTGAACTGTGTTTGACGGAGTTCCTAAATTATGGTCCACAAAGAGAGGCAGCAAAGGATGGAAAGCCTTTGTTAAGGAAAAACAAAGACGGTCAAATTGTAAGATGGGAGGTTGAAAAAGATGATTCCCTCTGTACCCTCCAAGAAGTTTTTGAGAAGGTCGAACCTTCTGTTGGCTTCAACATTGAGATCAAATTCGACGACTACATTGTTTACCAGGAGGACTATCTCGTCCGTGTCCTTCAATCCATCTTGAAAGTTGTGTTTGAGTACGCCAAAGATAGGCCTATTGTATTCTCGTCATTCCAACCAGATGCAGCGGTCCTTGTTAAGAAGTTGCAGAACACCTACCCTGTCTTTTTCTTGACAAATGGTGGGAATGAGATTTACTGTGATGTGAGAAGGAATTCTTTGGATGAAGCAATAAAGGTGTGCTTAGAGGGTGGTTTGGAAGGCATTGTATCGGAGGTGAAAGGTGTTTTCCGAAATCCTGGGGCAGTAACCAAGATTAAGGAGTCCAAGCTTTCACTTCTAACCTATGGCAAACTAAATAATGTTGCCGAAGCGGTGTACATGCAACACCTAATGGGAATTGAGGGAGTGATTGTGGATTTTGTGCAAGAGATCACAGAAGCAGTGTGTGATATGATAAAGCCATCGGCAGCCACGGAAGAAGACGGGGATGATTTGTTGGAAGGGGACGGGAAGATGCAATTGAAATCAAAGCCGGAGTTCTCGCAGAGGGAGCTTTCCTTTCTGTTGAAGCTCATTCCAGAATTGATACAACTCTGA

Protein Analysis

355

Amino Acids

40.18

Weight (kDa)

4.96

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDPD PF03009 22 - 299 2.7e-46 Glycerophosphoryl diester phosphodiesterase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011688)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02040
fragaria_vesca FvH4_6g53990 FvH4_6g53990
malus_domestica MD09G1006500.v1.1 MD17G1010400.v1.1
prunus_persica Prupe.3G310500_v2.0.a1 Prupe.3G310500_v2.0.a1
pyrus_communis pycom111g00480 pycom17g00500
rosa_chinensis RchiOBHm_Chr2g0176161
rosa_laevigata RLG00000022386
rosa_multiflora Rmu_sc0000405.1_g000006
rosa_roxburghii Rroxscaffold_2G00076720
rosa_rugosa Rorug02G0591200
rosa_samantha Rh2AG669800 Rh2BG681400 Rh2CG644300 Rh2DG695100
rosa_wichuraiana Rw2G054950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 506
AciI CCGC 2 cut(s) 596, 842
AcsI RAATTY 4 cut(s) 17, 179, 470, 682
AfaI GTAC 5 cut(s) 5, 256, 412, 548, 848
AfiI CCNNNNNNNGG 2 cut(s) 449, 558
AgsI TTSAA 7 cut(s) 145, 392, 457, 521, 532, 994, 1039
AjnI CCWGG 2 cut(s) 492, 766
AjuI GAANNNNNNNTTGG 2 cut(s) 432, 464
AluBI AGCT 3 cut(s) 799, 1024, 1042
AluI AGCT 3 cut(s) 799, 1024, 1042
AoxI GGCC 1 cut(s) 560
ApeKI GCWGC 5 cut(s) 152, 207, 326, 593, 938
ApoI RAATTY 4 cut(s) 17, 179, 470, 682
Asp700I GAANNNNTTC 1 cut(s) 682
AspS9I GGNCC 2 cut(s) 311, 598
AsuHPI GGTGA 2 cut(s) 232, 757
AvaII GGWCC 2 cut(s) 311, 598
BbsI GAAGAC 1 cut(s) 957
BbvI GCAGC 5 cut(s) 139, 194, 338, 605, 950
BccI CCATC 6 cut(s) 140, 197, 329, 375, 533, 940
BciT130I CCWGG 2 cut(s) 494, 768
BfaI CTAG 1 cut(s) 53
BisI GCNGC 5 cut(s) 153, 208, 327, 594, 939
BlsI GCNGC 5 cut(s) 154, 209, 328, 595, 940
Bme1390I CCNGG 2 cut(s) 494, 768
Bme18I GGWCC 2 cut(s) 311, 598
BmgT120I GGNCC 2 cut(s) 311, 598
BmrFI CCNGG 2 cut(s) 494, 768
BmsI GCATC 3 cut(s) 41, 580, 975
BpiI GAAGAC 1 cut(s) 957
BsaAI YACGTR 1 cut(s) 7
BsaJI CCNNGG 2 cut(s) 767, 942
BsaXI ACNNNNNCTCC 2 cut(s) 867, 897
Bsc4I CCNNNNNNNGG 2 cut(s) 449, 558
BseBI CCWGG 2 cut(s) 494, 768
BseDI CCNNGG 2 cut(s) 767, 942
BseGI GGATG 4 cut(s) 234, 340, 697, 964
BseLI CCNNNNNNNGG 2 cut(s) 449, 558
BseXI GCAGC 5 cut(s) 139, 194, 338, 605, 950
BshFI GGCC 1 cut(s) 562
BsiSI CCGG 1 cut(s) 1004
BslFI GGGAC 1 cut(s) 989
BslI CCNNNNNNNGG 2 cut(s) 449, 558
BsmFI GGGAC 1 cut(s) 989
BsnI GGCC 1 cut(s) 562
Bsp1407I TGTACA 1 cut(s) 846
Bsp143I GATC 5 cut(s) 57, 100, 247, 465, 900
BspACI CCGC 2 cut(s) 596, 842
BspANI GGCC 1 cut(s) 562
BsrGI TGTACA 1 cut(s) 846
BssECI CCNNGG 2 cut(s) 767, 942
BssMI GATC 5 cut(s) 57, 100, 247, 465, 900
Bst2UI CCWGG 2 cut(s) 494, 768
Bst4CI ACNGT 5 cut(s) 93, 259, 285, 368, 668
Bst6I CTCTTC 1 cut(s) 263
BstAUI TGTACA 1 cut(s) 846
BstBAI YACGTR 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 45, 712
BstDSI CCRYGG 1 cut(s) 942
BstEII GGTNACC 1 cut(s) 193
BstF5I GGATG 4 cut(s) 234, 340, 697, 964
BstKTI GATC 5 cut(s) 60, 103, 250, 468, 903
BstMBI GATC 5 cut(s) 57, 100, 247, 465, 900
BstMWI GCNNNNNNNGC 1 cut(s) 1021
BstNI CCWGG 2 cut(s) 494, 768
BstNSI RCATGY 1 cut(s) 853
BstPI GGTNACC 1 cut(s) 193
BstSCI CCNGG 2 cut(s) 492, 766
BstSNI TACGTA 1 cut(s) 7
BstV1I GCAGC 5 cut(s) 139, 194, 338, 605, 950
BstV2I GAAGAC 1 cut(s) 957
BsuRI GGCC 1 cut(s) 562
BtgI CCRYGG 1 cut(s) 942
BtsCI GGATG 4 cut(s) 234, 340, 697, 964
BtsI GCAGTG 2 cut(s) 147, 918
BtsIMutI CAGTG 2 cut(s) 147, 918
Cfr13I GGNCC 2 cut(s) 311, 598
Csp6I GTAC 5 cut(s) 4, 255, 411, 547, 847
CviAII CATG 2 cut(s) 136, 850
CviQI GTAC 5 cut(s) 4, 255, 411, 547, 847
DdeI CTNAG 2 cut(s) 45, 712
DpnI GATC 5 cut(s) 59, 102, 249, 467, 902
DpnII GATC 5 cut(s) 57, 100, 247, 465, 900
DrdI GACNNNNNNGTC 1 cut(s) 506
DseDI GACNNNNNNGTC 1 cut(s) 506
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
Eco105I TACGTA 1 cut(s) 7
Eco147I AGGCCT 1 cut(s) 562
Eco47I GGWCC 2 cut(s) 311, 598
Eco91I GGTNACC 1 cut(s) 193
EcoO65I GGTNACC 1 cut(s) 193
EcoRI GAATTC 1 cut(s) 682
EcoRII CCWGG 2 cut(s) 492, 766
FaeI CATG 2 cut(s) 139, 853
FaiI YATR 5 cut(s) 137, 309, 816, 851, 923
FalI AAGNNNNNCTT 4 cut(s) 670, 702, 695, 727
FaqI GGGAC 1 cut(s) 989
FatI CATG 2 cut(s) 135, 849
Fnu4HI GCNGC 5 cut(s) 153, 208, 327, 594, 939
FokI GGATG 4 cut(s) 221, 347, 704, 971
Fsp4HI GCNGC 5 cut(s) 153, 208, 327, 594, 939
FspBI CTAG 1 cut(s) 53
GluI GCNGC 5 cut(s) 153, 208, 327, 594, 939
HaeIII GGCC 1 cut(s) 562
HapII CCGG 1 cut(s) 1004
Hin1II CATG 2 cut(s) 139, 853
HindIII AAGCTT 1 cut(s) 797
HinfI GANTC 2 cut(s) 401, 791
HpaII CCGG 1 cut(s) 1004
HphI GGTGA 2 cut(s) 232, 757
Hpy166II GTNNAC 3 cut(s) 314, 490, 847
Hpy188I TCNGA 6 cut(s) 62, 100, 105, 742, 761, 1067
Hpy188III TCNNGA 5 cut(s) 36, 167, 529, 640, 1049
Hpy8I GTNNAC 3 cut(s) 314, 490, 847
Hpy99I CGWCG 2 cut(s) 230, 479
HpyAV CCTTC 6 cut(s) 427, 453, 527, 672, 722, 965
HpyCH4III ACNGT 5 cut(s) 93, 259, 285, 368, 668
HpyCH4IV ACGT 2 cut(s) 6, 186
HpyCH4V TGCA 5 cut(s) 593, 616, 853, 895, 988
HpyF10VI GCNNNNNNNGC 1 cut(s) 1021
HpyF3I CTNAG 2 cut(s) 45, 712
HpySE526I ACGT 2 cut(s) 6, 186
Hsp92II CATG 2 cut(s) 139, 853
Kzo9I GATC 5 cut(s) 57, 100, 247, 465, 900
LmnI GCTCC 1 cut(s) 1021
Lsp1109I GCAGC 5 cut(s) 139, 194, 338, 605, 950
LweI GCATC 3 cut(s) 41, 580, 975
MaeI CTAG 1 cut(s) 53
MaeII ACGT 2 cut(s) 6, 186
MaeIII GTNAC 2 cut(s) 193, 775
MalI GATC 5 cut(s) 59, 102, 249, 467, 902
MboI GATC 5 cut(s) 57, 100, 247, 465, 900
MboII GAAGA 5 cut(s) 257, 280, 959, 962, 994
MfeI CAATTG 1 cut(s) 989
MluCI AATT 9 cut(s) 17, 179, 304, 372, 470, 682, 867, 989, 1052
MlyI GAGTC 1 cut(s) 800
MmeI TCCRAC 2 cut(s) 607, 948
MroXI GAANNNNTTC 1 cut(s) 682
MseI TTAA 4 cut(s) 120, 350, 606, 786
MspA1I CMGCKG 1 cut(s) 596
MspI CCGG 1 cut(s) 1004
MspR9I CCNGG 2 cut(s) 494, 768
MunI CAATTG 1 cut(s) 989
MvaI CCWGG 2 cut(s) 494, 768
MwoI GCNNNNNNNGC 1 cut(s) 1021
NdeII GATC 5 cut(s) 57, 100, 247, 465, 900
NlaIII CATG 2 cut(s) 139, 853
NspI RCATGY 1 cut(s) 853
PceI AGGCCT 1 cut(s) 562
PdmI GAANNNNTTC 1 cut(s) 682
PfeI GAWTC 1 cut(s) 401
PkrI GCNGC 5 cut(s) 154, 209, 328, 595, 940
PleI GAGTC 1 cut(s) 799
PpsI GAGTC 1 cut(s) 799
Ppu21I YACGTR 1 cut(s) 7
Psp6I CCWGG 2 cut(s) 492, 766
PspEI GGTNACC 1 cut(s) 193
PspGI CCWGG 2 cut(s) 492, 766
PspPI GGNCC 2 cut(s) 311, 598
RsaI GTAC 5 cut(s) 5, 256, 412, 548, 848
RsaNI GTAC 5 cut(s) 4, 255, 411, 547, 847
SaqAI TTAA 4 cut(s) 120, 350, 606, 786
SatI GCNGC 5 cut(s) 153, 208, 327, 594, 939
Sau3AI GATC 5 cut(s) 57, 100, 247, 465, 900
Sau96I GGNCC 2 cut(s) 311, 598
SchI GAGTC 1 cut(s) 800
ScrFI CCNGG 2 cut(s) 494, 768
SfaNI GCATC 3 cut(s) 41, 580, 975
SinI GGWCC 2 cut(s) 311, 598
SnaBI TACGTA 1 cut(s) 7
Sse9I AATT 9 cut(s) 17, 179, 304, 372, 470, 682, 867, 989, 1052
SseBI AGGCCT 1 cut(s) 562
SsiI CCGC 2 cut(s) 596, 842
SspMI CTAG 1 cut(s) 53
StuI AGGCCT 1 cut(s) 562
StyD4I CCNGG 2 cut(s) 492, 766
TaaI ACNGT 5 cut(s) 93, 259, 285, 368, 668
TaiI ACGT 2 cut(s) 9, 189
TaqI TCGA 3 cut(s) 35, 438, 474
TasI AATT 9 cut(s) 17, 179, 304, 372, 470, 682, 867, 989, 1052
TatI WGTACW 1 cut(s) 846
TfiI GAWTC 1 cut(s) 401
Tru1I TTAA 4 cut(s) 120, 350, 606, 786
Tru9I TTAA 4 cut(s) 120, 350, 606, 786
TscAI CASTG 2 cut(s) 154, 918
TseI GCWGC 5 cut(s) 152, 207, 326, 593, 938
TspDTI ATGAA 3 cut(s) 95, 223, 708
TspGWI ACGGA 3 cut(s) 308, 500, 959
TspRI CASTG 2 cut(s) 154, 918
VpaK11BI GGWCC 2 cut(s) 311, 598
XapI RAATTY 4 cut(s) 17, 179, 470, 682
XceI RCATGY 1 cut(s) 853
XmnI GAANNNNTTC 1 cut(s) 682
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.