Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011688

Physical Location & Seq

Genomic Coordinates Forward (+)

26971867 .. 26975291

Gene Structure 3425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G310500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCTCTCAAGGCCGTCCATGTCTCCGACGTCCCCAACCTCGACCAGGTGCCGGAAAATGCCTCTCTGGCACTCTACTCCACCCGCTTCTCCAAAGGAGTGGAAATGGGTCGGGTGGCATCAAGGATACCCAAGTTTCTGGTCATAGGACACAGAGGGAATGGTATGAACGCGTTACAGTCGTCGGATAGGAGAATGAGAGCCATTAAAGAGAACTCCATCGCGTCCTTCAACTCGGCCGCCAACTTCCCCATTGATTTCGTCGAATTTGATGTTCAGGTAACCAAAGATGACTGCCCAGTCATTTTCCACGACAACTTCATCCTCTCTGAAGAAAATGGGACTGTGTGTGAGAGGAGAGTAACGGAACTGTGTCTGTCGGAGTTTCTTTGCTACGGCCCACAAAGAGAGGCAGGAAAGGAAGGAAAAACTTTGTTGAGGAAAACCAAAGATGGTAAAATAGTAAGATGGGATGTTGAAAAAGATGACTCTCTCTGCACACTCCAAGAAGCCTTCGAGCAGGTTGAACCTTCCCTGGGCTTCAACATCGAGTTGAAATTCGACGACTACGTTGTTTACGAACAGGACTATCTCATCAACGTCTTTCAAGCCATCTTGCAAGTGGTGTTTAACTACGCCAAAGACAGGCCCATCATCTTCTCAAGCTTCCAACCCGATGCTGCGCTGATTGTTAAAAAGTTGCAGAGCACCTATCCTGTTTTTTTCTTGACAAATGGTGGGACGGAGCTTTACTATGATGTGAGAAGGAATTCTTTGGAGGAAGCCATGAAGTTGTGTTTGGAGGGTGGTTTGCAAGGTATTGTGTCGGAGGTTAAAGGTGTGTTCAGAAATCCTGGGGCACTGACCAAGATCAAGGACGCCAAGCTTTCACTCCTAACATACGGAAAATTGAACAATGTGGCGGAAGCTGTTTACATGCAGTACCTAATGGGAATCGAGGGAGTGATAGTAGATCTTGTGCAAGAGATCACAGAGTCGGTGTCGGATATGATTAAGCCAACAACAGCTGAAGACGGGGGGGACAAGAATCTGTTGGAAGGAGACGGGAAGATGCAGATGCAGGTGAAATCAAAGCCAGAGTTCTCGCAGAGGGAGCTTTCTTTTCTTTTGAAGCTGATTCCAGAGTTGATACAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009536 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0046872 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

387

Amino Acids

43.38

Weight (kDa)

5.06

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02040
fragaria_vesca	FvH4_6g53990 FvH4_6g53990
malus_domestica	MD09G1006500.v1.1 MD17G1010400.v1.1
prunus_persica	Prupe.3G310500_v2.0.a1 Prupe.3G310500_v2.0.a1
pyrus_communis	pycom111g00480 pycom17g00500
rosa_chinensis	RchiOBHm_Chr2g0176161
rosa_laevigata	RLG00000022386
rosa_multiflora	Rmu_sc0000405.1_g000006
rosa_roxburghii	Rroxscaffold_2G00076720
rosa_rugosa	Rorug02G0591200
rosa_samantha	Rh2AG669800 Rh2BG681400 Rh2CG644300 Rh2DG695100
rosa_wichuraiana	Rw2G054950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1072
AasI	GACNNNNNNGTC	1 cut(s)	299
AatII	GACGTC	1 cut(s)	33
Acc36I	ACCTGC	2 cut(s)	511, 1072
AccB1I	GGYRCC	1 cut(s)	49
AccII	CGCG	2 cut(s)	173, 224
AciI	CCGC	3 cut(s)	85, 240, 923
AcoI	YGGCCR	1 cut(s)	237
AcsI	RAATTY	3 cut(s)	266, 557, 769
AcuI	CTGAAG	2 cut(s)	351, 1050
AcyI	GRCGYC	2 cut(s)	30, 879
AfaI	GTAC	1 cut(s)	944
AfiI	CCNNNNNNNGG	4 cut(s)	46, 52, 536, 645
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	8 cut(s)	232, 479, 527, 544, 556, 608, 913, 1132
AjnI	CCWGG	3 cut(s)	45, 534, 853
AjuI	GAANNNNNNNTTGG	2 cut(s)	782, 814
AluBI	AGCT	8 cut(s)	666, 748, 886, 929, 1028, 1117, 1135, 1156
AluI	AGCT	8 cut(s)	666, 748, 886, 929, 1028, 1117, 1135, 1156
Alw21I	GWGCWC	1 cut(s)	710
Alw26I	GTCTC	2 cut(s)	28, 1056
AoxI	GGCC	4 cut(s)	12, 237, 397, 647
ApeKI	GCWGC	1 cut(s)	680
ApoI	RAATTY	3 cut(s)	266, 557, 769
Asp700I	GAANNNNTTC	1 cut(s)	769
AspLEI	GCGC	1 cut(s)	685
AspS9I	GGNCC	2 cut(s)	398, 648
AsuHPI	GGTGA	1 cut(s)	1096
BaeGI	GKGCMC	1 cut(s)	862
BaeI	ACNNNNGTAYC	2 cut(s)	119, 152
BanI	GGYRCC	1 cut(s)	49
BbsI	GAAGAC	1 cut(s)	1038
Bbv12I	GWGCWC	1 cut(s)	710
BbvI	GCAGC	1 cut(s)	667
BccI	CCATC	5 cut(s)	227, 446, 462, 620, 659
BceAI	ACGGC	1 cut(s)	412
BciT130I	CCWGG	3 cut(s)	47, 536, 855
BciVI	GTATCC	1 cut(s)	120
BcoDI	GTCTC	2 cut(s)	28, 1056
BfuAI	ACCTGC	2 cut(s)	511, 1072
BfuI	GTATCC	1 cut(s)	120
BglI	GCCNNNNNGGC	1 cut(s)	68
BglII	AGATCT	1 cut(s)	973
BisI	GCNGC	2 cut(s)	240, 681
BlsI	GCNGC	2 cut(s)	241, 682
Bme1390I	CCNGG	3 cut(s)	47, 536, 855
BmgT120I	GGNCC	2 cut(s)	398, 648
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	3 cut(s)	47, 536, 855
BmrI	ACTGGG	1 cut(s)	293
BmsI	GCATC	4 cut(s)	128, 667, 1062, 1068
BmuI	ACTGGG	1 cut(s)	293
BpiI	GAAGAC	1 cut(s)	1038
BpuEI	CTTGAG	1 cut(s)	646
BsaHI	GRCGYC	2 cut(s)	30, 879
BsaJI	CCNNGG	3 cut(s)	534, 535, 854
BsaXI	ACNNNNNCTCC	2 cut(s)	954, 984
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 52, 536, 645
Bse1I	ACTGG	1 cut(s)	299
BseBI	CCWGG	3 cut(s)	47, 536, 855
BseDI	CCNNGG	3 cut(s)	534, 535, 854
BseGI	GGATG	2 cut(s)	321, 478
BseLI	CCNNNNNNNGG	4 cut(s)	46, 52, 536, 645
BseNI	ACTGG	1 cut(s)	299
BseRI	GAGGAG	1 cut(s)	370
BseSI	GKGCMC	1 cut(s)	862
BseX3I	CGGCCG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	667
BsgI	GTGCAG	1 cut(s)	481
Bsh1236I	CGCG	2 cut(s)	173, 224
Bsh1285I	CGRYCG	1 cut(s)	240
BshFI	GGCC	4 cut(s)	14, 239, 399, 649
BshNI	GGYRCC	1 cut(s)	49
BsiEI	CGRYCG	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	710
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	4 cut(s)	17, 355, 754, 1055
BslI	CCNNNNNNNGG	4 cut(s)	46, 52, 536, 645
BsmAI	GTCTC	2 cut(s)	28, 1056
BsmBI	CGTCTC	1 cut(s)	1056
BsmFI	GGGAC	4 cut(s)	17, 355, 754, 1055
BsnI	GGCC	4 cut(s)	14, 239, 399, 649
Bsp1286I	GDGCHC	2 cut(s)	710, 862
Bsp143I	GATC	3 cut(s)	870, 973, 987
BspACI	CCGC	3 cut(s)	85, 240, 923
BspANI	GGCC	4 cut(s)	14, 239, 399, 649
BspFNI	CGCG	2 cut(s)	173, 224
BspLI	GGNNCC	1 cut(s)	51
BspMI	ACCTGC	2 cut(s)	511, 1072
BspT107I	GGYRCC	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	3 cut(s)	534, 535, 854
BssMI	GATC	3 cut(s)	870, 973, 987
BssNI	GRCGYC	2 cut(s)	30, 879
Bst2UI	CCWGG	3 cut(s)	47, 536, 855
Bst4CI	ACNGT	3 cut(s)	180, 346, 372
BstACI	GRCGYC	2 cut(s)	30, 879
BstEII	GGTNACC	1 cut(s)	280
BstENI	CCTNNNNNAGG	1 cut(s)	44
BstF5I	GGATG	2 cut(s)	321, 478
BstFNI	CGCG	2 cut(s)	173, 224
BstHHI	GCGC	1 cut(s)	685
BstKTI	GATC	3 cut(s)	873, 976, 990
BstMAI	GTCTC	2 cut(s)	28, 1056
BstMBI	GATC	3 cut(s)	870, 973, 987
BstMCI	CGRYCG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 68, 1114
BstNI	CCWGG	3 cut(s)	47, 536, 855
BstNSI	RCATGY	1 cut(s)	940
BstPI	GGTNACC	1 cut(s)	280
BstSCI	CCNGG	3 cut(s)	45, 534, 853
BstSLI	GKGCMC	1 cut(s)	862
BstUI	CGCG	2 cut(s)	173, 224
BstV1I	GCAGC	1 cut(s)	667
BstV2I	GAAGAC	1 cut(s)	1038
BstX2I	RGATCY	1 cut(s)	973
BstXI	CCANNNNNNTGG	2 cut(s)	100, 139
BstYI	RGATCY	1 cut(s)	973
BstZI	CGGCCG	1 cut(s)	237
BsuI	GTATCC	1 cut(s)	120
BsuRI	GGCC	4 cut(s)	14, 239, 399, 649
BtgZI	GCGATG	1 cut(s)	205
BtsCI	GGATG	2 cut(s)	321, 478
BtsIMutI	CAGTG	1 cut(s)	860
BveI	ACCTGC	2 cut(s)	511, 1072
CfoI	GCGC	1 cut(s)	685
Cfr13I	GGNCC	2 cut(s)	398, 648
CseI	GACGC	2 cut(s)	213, 887
CsiI	ACCWGGT	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	943
CviAII	CATG	3 cut(s)	20, 787, 937
CviQI	GTAC	1 cut(s)	943
DpnI	GATC	3 cut(s)	872, 975, 989
DpnII	GATC	3 cut(s)	870, 973, 987
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
EaeI	YGGCCR	1 cut(s)	237
EagI	CGGCCG	1 cut(s)	237
EciI	GGCGGA	1 cut(s)	938
EclXI	CGGCCG	1 cut(s)	237
Eco52I	CGGCCG	1 cut(s)	237
Eco57I	CTGAAG	2 cut(s)	351, 1050
Eco91I	GGTNACC	1 cut(s)	280
EcoNI	CCTNNNNNAGG	1 cut(s)	44
EcoO65I	GGTNACC	1 cut(s)	280
EcoRI	GAATTC	1 cut(s)	769
EcoRII	CCWGG	3 cut(s)	45, 534, 853
Esp3I	CGTCTC	1 cut(s)	1056
FaeI	CATG	3 cut(s)	23, 790, 940
FaiI	YATR	8 cut(s)	21, 146, 167, 756, 788, 901, 938, 1010
FalI	AAGNNNNNCTT	2 cut(s)	757, 789
FaqI	GGGAC	4 cut(s)	17, 355, 754, 1055
FatI	CATG	3 cut(s)	19, 786, 936
FauI	CCCGC	1 cut(s)	92
Fnu4HI	GCNGC	2 cut(s)	240, 681
FokI	GGATG	2 cut(s)	308, 485
Fsp4HI	GCNGC	2 cut(s)	240, 681
GlaI	GCGC	1 cut(s)	684
GluI	GCNGC	2 cut(s)	240, 681
HaeIII	GGCC	4 cut(s)	14, 239, 399, 649
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	2 cut(s)	213, 887
HhaI	GCGC	1 cut(s)	685
Hin1I	GRCGYC	2 cut(s)	30, 879
Hin1II	CATG	3 cut(s)	23, 790, 940
Hin6I	GCGC	1 cut(s)	683
HinP1I	GCGC	1 cut(s)	683
HindIII	AAGCTT	2 cut(s)	664, 884
HinfI	GANTC	5 cut(s)	488, 954, 995, 1048, 1138
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	1 cut(s)	1096
Hpy166II	GTNNAC	2 cut(s)	577, 934
Hpy188I	TCNGA	7 cut(s)	28, 187, 331, 382, 829, 848, 1006
Hpy188III	TCNNGA	2 cut(s)	727, 1142
Hpy8I	GTNNAC	2 cut(s)	577, 934
Hpy99I	CGWCG	4 cut(s)	32, 187, 266, 566
HpyAV	CCTTC	6 cut(s)	238, 416, 523, 540, 759, 1052
HpyCH4III	ACNGT	3 cut(s)	180, 346, 372
HpyCH4IV	ACGT	3 cut(s)	30, 570, 600
HpyCH4V	TGCA	8 cut(s)	498, 619, 703, 814, 940, 982, 1075, 1081
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 68, 1114
HpySE526I	ACGT	3 cut(s)	30, 570, 600
Hsp92I	GRCGYC	2 cut(s)	30, 879
Hsp92II	CATG	3 cut(s)	23, 790, 940
HspAI	GCGC	1 cut(s)	683
Kzo9I	GATC	3 cut(s)	870, 973, 987
LmnI	GCTCC	2 cut(s)	745, 1114
Lsp1109I	GCAGC	1 cut(s)	667
LweI	GCATC	4 cut(s)	128, 667, 1062, 1068
MabI	ACCWGGT	1 cut(s)	45
MaeII	ACGT	3 cut(s)	30, 570, 600
MaeIII	GTNAC	3 cut(s)	174, 280, 361
MalI	GATC	3 cut(s)	872, 975, 989
MboI	GATC	3 cut(s)	870, 973, 987
MboII	GAAGA	4 cut(s)	344, 649, 1043, 1081
MflI	RGATCY	1 cut(s)	973
MhlI	GDGCHC	2 cut(s)	710, 862
MluCI	AATT	4 cut(s)	266, 557, 769, 908
MluI	ACGCGT	1 cut(s)	171
MlyI	GAGTC	2 cut(s)	482, 1004
MmeI	TCCRAC	7 cut(s)	51, 165, 360, 694, 807, 984, 1035
MroXI	GAANNNNTTC	1 cut(s)	769
MseI	TTAA	5 cut(s)	207, 630, 693, 834, 1014
MspA1I	CMGCKG	1 cut(s)	1028
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	3 cut(s)	47, 536, 855
MvaI	CCWGG	3 cut(s)	47, 536, 855
MvnI	CGCG	2 cut(s)	173, 224
MwoI	GCNNNNNNNGC	3 cut(s)	11, 68, 1114
NdeII	GATC	3 cut(s)	870, 973, 987
NlaIII	CATG	3 cut(s)	23, 790, 940
NlaIV	GGNNCC	1 cut(s)	51
NmeAIII	GCCGAG	1 cut(s)	215
NspI	RCATGY	1 cut(s)	940
PaqCI	CACCTGC	1 cut(s)	1072
PasI	CCCWGGG	1 cut(s)	535
PcsI	WCGNNNNNNNCGW	2 cut(s)	567, 576
PdmI	GAANNNNTTC	1 cut(s)	769
PfeI	GAWTC	3 cut(s)	954, 1048, 1138
PkrI	GCNGC	2 cut(s)	241, 682
PleI	GAGTC	2 cut(s)	482, 1003
PpsI	GAGTC	2 cut(s)	482, 1003
Psp6I	CCWGG	3 cut(s)	45, 534, 853
PspEI	GGTNACC	1 cut(s)	280
PspGI	CCWGG	3 cut(s)	45, 534, 853
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	2 cut(s)	398, 648
PsuI	RGATCY	1 cut(s)	973
PvuII	CAGCTG	1 cut(s)	1028
RsaI	GTAC	1 cut(s)	944
RsaNI	GTAC	1 cut(s)	943
SaqAI	TTAA	5 cut(s)	207, 630, 693, 834, 1014
SatI	GCNGC	2 cut(s)	240, 681
Sau3AI	GATC	3 cut(s)	870, 973, 987
Sau96I	GGNCC	2 cut(s)	398, 648
SchI	GAGTC	2 cut(s)	482, 1004
ScrFI	CCNGG	3 cut(s)	47, 536, 855
SduI	GDGCHC	2 cut(s)	710, 862
SexAI	ACCWGGT	1 cut(s)	45
SfaNI	GCATC	4 cut(s)	128, 667, 1062, 1068
SmlI	CTYRAG	2 cut(s)	8, 661
SmoI	CTYRAG	2 cut(s)	8, 661
Sse9I	AATT	4 cut(s)	266, 557, 769, 908
SsiI	CCGC	3 cut(s)	85, 240, 923
StyD4I	CCNGG	3 cut(s)	45, 534, 853
TaaI	ACNGT	3 cut(s)	180, 346, 372
TaiI	ACGT	3 cut(s)	33, 573, 603
TaqI	TCGA	6 cut(s)	42, 264, 516, 549, 561, 957
TasI	AATT	4 cut(s)	266, 557, 769, 908
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	3 cut(s)	954, 1048, 1138
Tru1I	TTAA	5 cut(s)	207, 630, 693, 834, 1014
Tru9I	TTAA	5 cut(s)	207, 630, 693, 834, 1014
TscAI	CASTG	1 cut(s)	867
TseI	GCWGC	1 cut(s)	680
TspDTI	ATGAA	3 cut(s)	182, 310, 803
TspGWI	ACGGA	3 cut(s)	380, 758, 918
TspRI	CASTG	1 cut(s)	867
XagI	CCTNNNNNAGG	1 cut(s)	44
XapI	RAATTY	3 cut(s)	266, 557, 769
XceI	RCATGY	1 cut(s)	940
XcmI	CCANNNNNNNNNTGG	1 cut(s)	619
XmnI	GAANNNNTTC	1 cut(s)	769
ZraI	GACGTC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.