Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009855

Physical Location & Seq

Genomic Coordinates Forward (+)

390720 .. 392767

Gene Structure 2048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G02150.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGAATATCGTCTCTTGGAAAGATGCAAACGACGAAGTTGCAGGCGGCGCTACGACAAGACGTGAAAGAGAAGTAAAAGAGGATCAAGAAGAAACCGAAGTCAGAGCCACCAGTGGCAAAACCGTAATTAAAAAGCAGCCTACATCGATCTCTTCTTCTTCTTCTTCGTGGATGAAATCCAAGGATCCGAGGATTGTTAGGGTTTCACGCGCCTTTGGAGGCAAAGACCGTCACAGCAAAGTGTGTACGTTACGTGGACTACGTGACAGACGCGTGAGATTATCAGTCCCAACGGCTATTCAGCTCTACGATCTTCAAGAACGGCTCGGTGTTGACCAGCCTAGCAAAGCCGTTGACTGGTTGCTTGATGCAGCTAAAGAGGAGATCGACGAGCTACCTCCGTTACCTATCTCGCCGGAAAATTTCAGCATCTTCAACCATCATCAGTCCTTCTTGAATCTTGGTCAACGGCCCGGTCAAGATCCGACCCAACTCGGGTTTAAAATCAATGGATGTGTACAAAAGTCTACTACTACTAGCCGCGAAGAAAACGATAGAGAGAAAGGAGAAAACGATGTCGTTTACACAAACAATCATCATGTTGGGTCTTATGGAACTTATCACAACCTGGAACATCATCATCATCATCACCAACATTTGAGTTTACAGGCAGATTATCATAGTCATCAACTACATAGTCTTGTCCCATTTCCATCACAAATTTTGGTATGTCCAATGACGACATCACCAACAACTACAACTATACAATCTTTGTTTCCATCATCATCGTCAGCTGGTTCAGGGACTATGGAGACATTAGATCCGAGGCAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009653 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0031347 GO:0032501 GO:0032502 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045962 GO:0048366 GO:0048367 GO:0048583 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

278

Amino Acids

31.24

Weight (kDa)

6.76

Isoelectric Point (pI)

49.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	74 - 147	1.6e-27	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02150 AT3G02150
fragaria_vesca	FvH4_6g46730
malus_domestica	MD09G1068200.v1.1 MD17G1061100.v1.1
prunus_persica	Prupe.3G252600_v2.0.a1
pyrus_communis	pycom12433g00140 pycom17g06080
rosa_chinensis	RchiOBHm_Chr2g0165641
rosa_laevigata	RLG00000021544
rosa_multiflora	Rmu_sc0001441.1_g000008 Rmu_sc0001522.1_g000029
rosa_roxburghii	Rroxscaffold_2G00085680
rosa_rugosa	Rorug02G0516400 Rorug02G0516400
rosa_samantha	Rh2AG582900 Rh2BG594900 Rh2CG564800 Rh2DG604700
rosa_wichuraiana	Rw0G011330 Rw0G016040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	527
AccII	CGCG	3 cut(s)	210, 273, 543
AciI	CCGC	2 cut(s)	45, 541
AclWI	GGATC	5 cut(s)	90, 179, 192, 476, 815
AcsI	RAATTY	2 cut(s)	421, 720
AfaI	GTAC	2 cut(s)	247, 519
AfiI	CCNNNNNNNGG	2 cut(s)	357, 495
AflIII	ACRYGT	1 cut(s)	271
AgsI	TTSAA	3 cut(s)	317, 436, 457
AjiI	CACGTC	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	627
AluBI	AGCT	4 cut(s)	304, 374, 394, 794
AluI	AGCT	4 cut(s)	304, 374, 394, 794
Alw26I	GTCTC	2 cut(s)	16, 806
AlwI	GGATC	5 cut(s)	90, 179, 192, 476, 815
Ama87I	CYCGRG	1 cut(s)	494
AoxI	GGCC	1 cut(s)	470
ApeKI	GCWGC	2 cut(s)	136, 371
ApoI	RAATTY	2 cut(s)	421, 720
AspLEI	GCGC	2 cut(s)	50, 212
AspS9I	GGNCC	1 cut(s)	471
AsuC2I	CCSGG	1 cut(s)	474
AsuHPI	GGTGA	2 cut(s)	641, 738
AvaI	CYCGRG	1 cut(s)	494
BamHI	GGATCC	1 cut(s)	184
BbvI	GCAGC	2 cut(s)	148, 383
BccI	CCATC	3 cut(s)	447, 721, 787
BceAI	ACGGC	4 cut(s)	309, 335, 338, 485
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	1 cut(s)	629
BcnI	CCSGG	1 cut(s)	474
BcoDI	GTCTC	2 cut(s)	16, 806
BfaI	CTAG	2 cut(s)	342, 537
BfoI	RGCGCY	1 cut(s)	51
BisI	GCNGC	4 cut(s)	46, 137, 372, 541
BlsI	GCNGC	4 cut(s)	47, 138, 373, 542
Bme1390I	CCNGG	2 cut(s)	474, 629
BmeT110I	CYCGRG	1 cut(s)	494
BmgBI	CACGTC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	471
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	2 cut(s)	474, 629
BmsI	GCATC	3 cut(s)	13, 358, 438
BpuMI	CCSGG	1 cut(s)	474
Bsa29I	ATCGAT	1 cut(s)	146
BsaAI	YACGTR	2 cut(s)	254, 263
BsaJI	CCNNGG	3 cut(s)	180, 188, 824
Bsc4I	CCNNNNNNNGG	2 cut(s)	357, 495
Bse1I	ACTGG	2 cut(s)	111, 362
BseBI	CCWGG	1 cut(s)	629
BseCI	ATCGAT	1 cut(s)	146
BseDI	CCNNGG	3 cut(s)	180, 188, 824
BseGI	GGATG	2 cut(s)	177, 518
BseLI	CCNNNNNNNGG	2 cut(s)	357, 495
BseNI	ACTGG	2 cut(s)	111, 362
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	2 cut(s)	148, 383
Bsh1236I	CGCG	3 cut(s)	210, 273, 543
BshFI	GGCC	1 cut(s)	472
BshVI	ATCGAT	1 cut(s)	146
BsiHKCI	CYCGRG	1 cut(s)	494
BsiSI	CCGG	2 cut(s)	416, 474
BslFI	GGGAC	3 cut(s)	272, 689, 817
BslI	CCNNNNNNNGG	2 cut(s)	357, 495
BsmAI	GTCTC	2 cut(s)	16, 806
BsmBI	CGTCTC	1 cut(s)	16
BsmFI	GGGAC	3 cut(s)	272, 689, 817
BsnI	GGCC	1 cut(s)	472
BsoBI	CYCGRG	1 cut(s)	494
Bsp1407I	TGTACA	1 cut(s)	517
Bsp143I	GATC	7 cut(s)	82, 147, 184, 310, 384, 481, 820
BspACI	CCGC	2 cut(s)	45, 541
BspANI	GGCC	1 cut(s)	472
BspDI	ATCGAT	1 cut(s)	146
BspFNI	CGCG	3 cut(s)	210, 273, 543
BspLI	GGNNCC	1 cut(s)	186
BspPI	GGATC	5 cut(s)	90, 179, 192, 476, 815
BsrGI	TGTACA	1 cut(s)	517
BsrI	ACTGG	2 cut(s)	111, 362
BssECI	CCNNGG	3 cut(s)	180, 188, 824
BssMI	GATC	7 cut(s)	82, 147, 184, 310, 384, 481, 820
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	629
Bst4CI	ACNGT	2 cut(s)	124, 230
Bst6I	CTCTTC	1 cut(s)	157
BstAUI	TGTACA	1 cut(s)	517
BstBAI	YACGTR	2 cut(s)	254, 263
BstC8I	GCNNGC	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	177, 518
BstFNI	CGCG	3 cut(s)	210, 273, 543
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	2 cut(s)	50, 212
BstKTI	GATC	7 cut(s)	85, 150, 187, 313, 387, 484, 823
BstMAI	GTCTC	2 cut(s)	16, 806
BstMBI	GATC	7 cut(s)	82, 147, 184, 310, 384, 481, 820
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	1 cut(s)	629
BstSCI	CCNGG	2 cut(s)	472, 627
BstUI	CGCG	3 cut(s)	210, 273, 543
BstV1I	GCAGC	2 cut(s)	148, 383
BstX2I	RGATCY	3 cut(s)	184, 481, 820
BstYI	RGATCY	3 cut(s)	184, 481, 820
Bsu15I	ATCGAT	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	472
BsuTUI	ATCGAT	1 cut(s)	146
BtrI	CACGTC	1 cut(s)	62
BtsCI	GGATG	2 cut(s)	177, 518
BtsIMutI	CAGTG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	43
CfoI	GCGC	2 cut(s)	50, 212
Cfr13I	GGNCC	1 cut(s)	471
ClaI	ATCGAT	1 cut(s)	146
CseI	GACGC	1 cut(s)	279
Csp6I	GTAC	2 cut(s)	246, 518
CviAII	CATG	1 cut(s)	599
CviQI	GTAC	2 cut(s)	246, 518
DpnI	GATC	7 cut(s)	84, 149, 186, 312, 386, 483, 822
DpnII	GATC	7 cut(s)	82, 147, 184, 310, 384, 481, 820
DraI	TTTAAA	1 cut(s)	502
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	627
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
Esp3I	CGTCTC	1 cut(s)	16
FaeI	CATG	1 cut(s)	602
FaiI	YATR	7 cut(s)	600, 612, 681, 696, 730, 764, 809
FaqI	GGGAC	3 cut(s)	272, 689, 817
FatI	CATG	1 cut(s)	598
FblI	GTMKAC	1 cut(s)	527
Fnu4HI	GCNGC	4 cut(s)	46, 137, 372, 541
FokI	GGATG	2 cut(s)	184, 525
Fsp4HI	GCNGC	4 cut(s)	46, 137, 372, 541
FspBI	CTAG	2 cut(s)	342, 537
GlaI	GCGC	2 cut(s)	49, 211
GluI	GCNGC	4 cut(s)	46, 137, 372, 541
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	472
HapII	CCGG	2 cut(s)	416, 474
HgaI	GACGC	1 cut(s)	279
HhaI	GCGC	2 cut(s)	50, 212
Hin1II	CATG	1 cut(s)	602
Hin6I	GCGC	2 cut(s)	48, 210
HinP1I	GCGC	2 cut(s)	48, 210
HincII	GTYRAC	3 cut(s)	334, 355, 467
HindII	GTYRAC	3 cut(s)	334, 355, 467
HinfI	GANTC	1 cut(s)	457
HpaII	CCGG	2 cut(s)	416, 474
HphI	GGTGA	2 cut(s)	641, 738
Hpy166II	GTNNAC	9 cut(s)	246, 257, 334, 355, 467, 518, 528, 583, 665
Hpy188I	TCNGA	4 cut(s)	104, 189, 486, 825
Hpy188III	TCNNGA	4 cut(s)	86, 317, 454, 479
Hpy8I	GTNNAC	9 cut(s)	246, 257, 334, 355, 467, 518, 528, 583, 665
Hpy99I	CGWCG	2 cut(s)	35, 392
HpyAV	CCTTC	1 cut(s)	460
HpyCH4III	ACNGT	2 cut(s)	124, 230
HpyCH4IV	ACGT	4 cut(s)	61, 248, 253, 262
HpyCH4V	TGCA	3 cut(s)	26, 41, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpySE526I	ACGT	4 cut(s)	61, 248, 253, 262
Hsp92II	CATG	1 cut(s)	602
HspAI	GCGC	2 cut(s)	48, 210
Kzo9I	GATC	7 cut(s)	82, 147, 184, 310, 384, 481, 820
Lsp1109I	GCAGC	2 cut(s)	148, 383
LweI	GCATC	3 cut(s)	13, 358, 438
MaeI	CTAG	2 cut(s)	342, 537
MaeII	ACGT	4 cut(s)	61, 248, 253, 262
MaeIII	GTNAC	4 cut(s)	230, 249, 263, 402
MalI	GATC	7 cut(s)	84, 149, 186, 312, 386, 483, 822
MboI	GATC	7 cut(s)	82, 147, 184, 310, 384, 481, 820
MboII	GAAGA	9 cut(s)	101, 144, 147, 150, 153, 156, 305, 424, 557
MflI	RGATCY	3 cut(s)	184, 481, 820
MluCI	AATT	3 cut(s)	126, 421, 720
MluI	ACGCGT	1 cut(s)	271
MmeI	TCCRAC	1 cut(s)	509
MnlI	CCTC	6 cut(s)	73, 183, 212, 373, 408, 819
MseI	TTAA	2 cut(s)	129, 501
MspA1I	CMGCKG	1 cut(s)	794
MspI	CCGG	2 cut(s)	416, 474
MspR9I	CCNGG	2 cut(s)	474, 629
MvaI	CCWGG	1 cut(s)	629
MvnI	CGCG	3 cut(s)	210, 273, 543
MwoI	GCNNNNNNNGC	1 cut(s)	47
NciI	CCSGG	1 cut(s)	474
NdeII	GATC	7 cut(s)	82, 147, 184, 310, 384, 481, 820
NlaIII	CATG	1 cut(s)	602
NlaIV	GGNNCC	1 cut(s)	186
NmuCI	GTSAC	2 cut(s)	230, 263
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	457
PkrI	GCNGC	4 cut(s)	47, 138, 373, 542
Ppu21I	YACGTR	2 cut(s)	254, 263
Psp6I	CCWGG	1 cut(s)	627
PspGI	CCWGG	1 cut(s)	627
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	471
PsuI	RGATCY	3 cut(s)	184, 481, 820
PvuII	CAGCTG	1 cut(s)	794
RsaI	GTAC	2 cut(s)	247, 519
RsaNI	GTAC	2 cut(s)	246, 518
SaqAI	TTAA	2 cut(s)	129, 501
SatI	GCNGC	4 cut(s)	46, 137, 372, 541
Sau3AI	GATC	7 cut(s)	82, 147, 184, 310, 384, 481, 820
Sau96I	GGNCC	1 cut(s)	471
ScrFI	CCNGG	2 cut(s)	474, 629
SfaNI	GCATC	3 cut(s)	13, 358, 438
Sse9I	AATT	3 cut(s)	126, 421, 720
SsiI	CCGC	2 cut(s)	45, 541
SspMI	CTAG	2 cut(s)	342, 537
StyD4I	CCNGG	2 cut(s)	472, 627
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	2 cut(s)	124, 230
TaiI	ACGT	4 cut(s)	64, 251, 256, 265
TaqI	TCGA	2 cut(s)	146, 387
TasI	AATT	3 cut(s)	126, 421, 720
TatI	WGTACW	1 cut(s)	517
TauI	GCSGC	2 cut(s)	48, 543
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	2 cut(s)	129, 501
Tru9I	TTAA	2 cut(s)	129, 501
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	2 cut(s)	230, 263
TseI	GCWGC	2 cut(s)	136, 371
Tsp45I	GTSAC	2 cut(s)	230, 263
TspDTI	ATGAA	2 cut(s)	17, 188
TspGWI	ACGGA	1 cut(s)	390
TspRI	CASTG	1 cut(s)	118
XapI	RAATTY	2 cut(s)	421, 720
XmiI	GTMKAC	1 cut(s)	527
XspI	CTAG	2 cut(s)	342, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.