RLG00000021544
TCP Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0009855
Physical Location & Seq
Reverse (-)
76301614 .. 76302717
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021544

Sequence Viewer

Length: 1104 bp
ATGATTAGGAGTCCCAATACTAATCAAGCAGATGTACAGGGACAAGCAGGAAATTCAAGTACTCATAATGAAGTTGGCAAGACCTCAAAAGTAGCTTTGTCATCATCAATTTCTCGTTCAAGTACTTCAACAACAGTAGCACCATGGATGAGGTTAAGTAAAGATCCAAGGATTGTACGTGTGTCGCGTGCTTTTGGAGGAAAGGACAGGCATAGCAAAGTTTGCACAGTGAGAGGGTTGCGAGACCGGCGCGTGAGGCTTTCGGTACCTACTGCTATTCAGTTATATGATCTTCAAGATAGGCTTGGCCTTAACCAGCCTAGCAAAGTTGTCGACTGGTTGCTTGACGCGGCCAAGGATGATATCGACCAACTTCCACCTCTTCCGATGATGCCTCCTGCCCCCGGGAGCTATGGCGGTGGTGGCCTAATGAATTATCAGTCACTCCTGAATATCACTCCATCGTCTCTTGATCAAAACATTGGAGATCAAGGGTTTAGAAGCCATAATTGGAGATCAACAAATGATGGTGAAAAAGATCAAGAAAATGATAGAGATGTGGAAGAATCAGATGAAGATGATCATCGAAAGCAAGGAGGGAATGTTGTCGATCATGGTTCATCATCATCAAACAACTTCTTGATGACCCGAAGTAGTGCTACTACCAATCATCCATTGTTCTTTCCAGGTCTTCTGAACAATAGTAATGCCATGCCTAATTACGGTTTTCACAATTGGGATCACAATCAGTCTTCAAATTTTCCCCTATCTCATCAATTAGGAAGCCATGGATTCACATCTCAACCTACAGATCCCCACAATTTCAATGTGACGTCCTTGCCTTCCACATTGTCGTTATCTACTGGAACAACGCAAGCTTATTTTCCTTCGCATGCTACCACGGATGCAGCGGATCATCAGATCGATATTCCGAGACAGTTCAACCTCCATGTGCAAAATCCTCATCAAAACCTCTTGGCCAATTCTGTATACCCTAGTCGCCAGTCTATGCAGAGAGCAACGCCCCCAAATTTGATGAGTATGATTACAAAGCCTGCCCATTCGTCTCAGCCAAATAAAGACCAGGAGCCTCCTTCTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

368

Amino Acids

40.45

Weight (kDa)

6.98

Isoelectric Point (pI)

53.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 67 - 163 5.6e-27 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 836
Acc65I GGTACC 1 cut(s) 265
AccB1I GGYRCC 1 cut(s) 265
AccI GTMKAC 2 cut(s) 333, 990
AccII CGCG 3 cut(s) 187, 252, 350
AciI CCGC 3 cut(s) 350, 417, 911
AclWI GGATC 4 cut(s) 158, 747, 806, 921
AcoI YGGCCR 2 cut(s) 351, 978
AcsI RAATTY 3 cut(s) 52, 757, 1030
AcyI GRCGYC 1 cut(s) 833
AfaI GTAC 5 cut(s) 36, 61, 124, 177, 267
AfiI CCNNNNNNNGG 2 cut(s) 404, 722
AflIII ACRYGT 1 cut(s) 178
AgsI TTSAA 7 cut(s) 57, 120, 129, 296, 756, 826, 943
AjnI CCWGG 2 cut(s) 685, 1083
AjuI GAANNNNNNNTTGG 2 cut(s) 493, 525
AluBI AGCT 3 cut(s) 95, 411, 878
AluI AGCT 3 cut(s) 95, 411, 878
Alw26I GTCTC 4 cut(s) 237, 471, 928, 1071
AlwI GGATC 4 cut(s) 158, 747, 806, 921
Ama87I CYCGRG 1 cut(s) 404
AoxI GGCC 4 cut(s) 307, 351, 424, 978
ApeKI GCWGC 1 cut(s) 908
ApoI RAATTY 3 cut(s) 52, 757, 1030
Asp718I GGTACC 1 cut(s) 265
AspLEI GCGC 1 cut(s) 252
AsuC2I CCSGG 2 cut(s) 405, 406
AsuHPI GGTGA 1 cut(s) 542
AvaI CYCGRG 1 cut(s) 404
BalI TGGCCA 1 cut(s) 980
BanI GGYRCC 1 cut(s) 265
BarI GAAGNNNNNNTAC 2 cut(s) 643, 675
BbsI GAAGAC 2 cut(s) 683, 744
BbvI GCAGC 1 cut(s) 920
BccI CCATC 2 cut(s) 469, 521
BcgI CGANNNNNNTGC 2 cut(s) 313, 347
BciT130I CCWGG 2 cut(s) 687, 1085
BclI TGATCA 2 cut(s) 472, 580
BcnI CCSGG 2 cut(s) 405, 406
BcoDI GTCTC 4 cut(s) 237, 471, 928, 1071
BfaI CTAG 3 cut(s) 321, 996, 1098
BfmI CTRYAG 1 cut(s) 807
BisI GCNGC 2 cut(s) 351, 909
BlsI GCNGC 2 cut(s) 352, 910
BmcAI AGTACT 2 cut(s) 61, 124
Bme1390I CCNGG 4 cut(s) 405, 406, 687, 1085
BmeT110I CYCGRG 1 cut(s) 404
BmiI GGNNCC 2 cut(s) 267, 1089
BmrFI CCNGG 4 cut(s) 405, 406, 687, 1085
BmsI GCATC 2 cut(s) 381, 895
BpiI GAAGAC 2 cut(s) 683, 744
BpuMI CCSGG 2 cut(s) 405, 406
Bsa29I ATCGAT 1 cut(s) 924
BsaAI YACGTR 1 cut(s) 179
BsaBI GATNNNNATC 3 cut(s) 582, 744, 796
BsaHI GRCGYC 1 cut(s) 833
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 7 cut(s) 143, 167, 354, 403, 404, 787, 900
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bsc4I CCNNNNNNNGG 2 cut(s) 404, 722
Bse118I RCCGGY 1 cut(s) 246
Bse1I ACTGG 3 cut(s) 341, 868, 1003
Bse8I GATNNNNATC 3 cut(s) 582, 744, 796
BseBI CCWGG 2 cut(s) 687, 1085
BseCI ATCGAT 1 cut(s) 924
BseDI CCNNGG 7 cut(s) 143, 167, 354, 403, 404, 787, 900
BseGI GGATG 4 cut(s) 153, 364, 670, 910
BseJI GATNNNNATC 3 cut(s) 582, 744, 796
BseLI CCNNNNNNNGG 2 cut(s) 404, 722
BseMII CTCAG 1 cut(s) 1082
BseNI ACTGG 3 cut(s) 341, 868, 1003
BseXI GCAGC 1 cut(s) 920
Bsh1236I CGCG 3 cut(s) 187, 252, 350
BshFI GGCC 4 cut(s) 309, 353, 426, 980
BshNI GGYRCC 1 cut(s) 265
BshVI ATCGAT 1 cut(s) 924
BsiHKCI CYCGRG 1 cut(s) 404
BsiSI CCGG 2 cut(s) 247, 405
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 2 cut(s) 404, 722
BsmAI GTCTC 4 cut(s) 237, 471, 928, 1071
BsmBI CGTCTC 2 cut(s) 471, 1071
BsmFI GGGAC 1 cut(s) 54
BsnI GGCC 4 cut(s) 309, 353, 426, 980
Bso31I GGTCTC 1 cut(s) 237
BsoBI CYCGRG 1 cut(s) 404
Bsp1407I TGTACA 1 cut(s) 34
Bsp19I CCATGG 2 cut(s) 143, 787
BspACI CCGC 3 cut(s) 350, 417, 911
BspANI GGCC 4 cut(s) 309, 353, 426, 980
BspCNI CTCAG 1 cut(s) 1081
BspDI ATCGAT 1 cut(s) 924
BspFNI CGCG 3 cut(s) 187, 252, 350
BspLI GGNNCC 2 cut(s) 267, 1089
BspPI GGATC 4 cut(s) 158, 747, 806, 921
BspT107I GGYRCC 1 cut(s) 265
BspTNI GGTCTC 1 cut(s) 237
BsrFI RCCGGY 1 cut(s) 246
BsrGI TGTACA 1 cut(s) 34
BsrI ACTGG 3 cut(s) 341, 868, 1003
BssAI RCCGGY 1 cut(s) 246
BssECI CCNNGG 7 cut(s) 143, 167, 354, 403, 404, 787, 900
BssNAI GTATAC 1 cut(s) 991
BssNI GRCGYC 1 cut(s) 833
BssT1I CCWWGG 4 cut(s) 143, 167, 354, 787
Bst1107I GTATAC 1 cut(s) 991
Bst2UI CCWGG 2 cut(s) 687, 1085
Bst4CI ACNGT 4 cut(s) 136, 229, 725, 939
Bst6I CTCTTC 1 cut(s) 387
BstACI GRCGYC 1 cut(s) 833
BstAPI GCANNNNNTGC 1 cut(s) 222
BstAUI TGTACA 1 cut(s) 34
BstBAI YACGTR 1 cut(s) 179
BstC8I GCNNGC 4 cut(s) 189, 876, 894, 1056
BstDEI CTNAG 1 cut(s) 1068
BstDSI CCRYGG 3 cut(s) 143, 787, 900
BstF5I GGATG 4 cut(s) 153, 364, 670, 910
BstFNI CGCG 3 cut(s) 187, 252, 350
BstHHI GCGC 1 cut(s) 252
BstMAI GTCTC 4 cut(s) 237, 471, 928, 1071
BstMWI GCNNNNNNNGC 4 cut(s) 222, 247, 256, 423
BstNI CCWGG 2 cut(s) 687, 1085
BstNSI RCATGY 1 cut(s) 896
BstSCI CCNGG 4 cut(s) 403, 404, 685, 1083
BstSFI CTRYAG 1 cut(s) 807
BstUI CGCG 3 cut(s) 187, 252, 350
BstV1I GCAGC 1 cut(s) 920
BstV2I GAAGAC 2 cut(s) 683, 744
BstX2I RGATCY 2 cut(s) 163, 811
BstYI RGATCY 2 cut(s) 163, 811
BstZ17I GTATAC 1 cut(s) 991
Bsu15I ATCGAT 1 cut(s) 924
BsuRI GGCC 4 cut(s) 309, 353, 426, 980
BsuTUI ATCGAT 1 cut(s) 924
BtgI CCRYGG 3 cut(s) 143, 787, 900
BtsCI GGATG 4 cut(s) 153, 364, 670, 910
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 4 cut(s) 189, 876, 894, 1056
CfoI GCGC 1 cut(s) 252
Cfr10I RCCGGY 1 cut(s) 246
Cfr9I CCCGGG 1 cut(s) 404
ClaI ATCGAT 1 cut(s) 924
CseI GACGC 1 cut(s) 356
Csp6I GTAC 5 cut(s) 35, 60, 123, 176, 266
CviAII CATG 6 cut(s) 144, 614, 712, 788, 893, 950
CviQI GTAC 5 cut(s) 35, 60, 123, 176, 266
DdeI CTNAG 1 cut(s) 1068
EaeI YGGCCR 2 cut(s) 351, 978
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Eco130I CCWWGG 4 cut(s) 143, 167, 354, 787
Eco31I GGTCTC 1 cut(s) 237
Eco32I GATATC 1 cut(s) 364
Eco88I CYCGRG 1 cut(s) 404
EcoRII CCWGG 2 cut(s) 685, 1083
EcoRV GATATC 1 cut(s) 364
EcoT14I CCWWGG 4 cut(s) 143, 167, 354, 787
ErhI CCWWGG 4 cut(s) 143, 167, 354, 787
Esp3I CGTCTC 2 cut(s) 471, 1071
FaeI CATG 6 cut(s) 147, 617, 715, 791, 896, 953
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FaqI GGGAC 1 cut(s) 54
FatI CATG 6 cut(s) 143, 613, 711, 787, 892, 949
FbaI TGATCA 2 cut(s) 472, 580
FblI GTMKAC 2 cut(s) 333, 990
Fnu4HI GCNGC 2 cut(s) 351, 909
FokI GGATG 4 cut(s) 160, 371, 657, 917
Fsp4HI GCNGC 2 cut(s) 351, 909
FspBI CTAG 3 cut(s) 321, 996, 1098
GlaI GCGC 1 cut(s) 251
GluI GCNGC 2 cut(s) 351, 909
HaeIII GGCC 4 cut(s) 309, 353, 426, 980
HapII CCGG 2 cut(s) 247, 405
HgaI GACGC 1 cut(s) 356
HhaI GCGC 1 cut(s) 252
Hin1I GRCGYC 1 cut(s) 833
Hin1II CATG 6 cut(s) 147, 617, 715, 791, 896, 953
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 876
HinfI GANTC 3 cut(s) 10, 566, 792
HpaII CCGG 2 cut(s) 247, 405
HphI GGTGA 1 cut(s) 542
Hpy166II GTNNAC 2 cut(s) 334, 991
Hpy188I TCNGA 5 cut(s) 387, 571, 696, 921, 933
Hpy188III TCNNGA 6 cut(s) 296, 448, 470, 542, 640, 1098
Hpy8I GTNNAC 2 cut(s) 334, 991
HpyAV CCTTC 3 cut(s) 852, 897, 1104
HpyCH4III ACNGT 4 cut(s) 136, 229, 725, 939
HpyCH4IV ACGT 2 cut(s) 178, 833
HpyCH4V TGCA 4 cut(s) 225, 908, 955, 1012
HpyF10VI GCNNNNNNNGC 4 cut(s) 222, 247, 256, 423
HpyF3I CTNAG 1 cut(s) 1068
HpySE526I ACGT 2 cut(s) 178, 833
Hsp92I GRCGYC 1 cut(s) 833
Hsp92II CATG 6 cut(s) 147, 617, 715, 791, 896, 953
HspAI GCGC 1 cut(s) 250
KpnI GGTACC 1 cut(s) 269
Ksp22I TGATCA 2 cut(s) 472, 580
LmnI GCTCC 2 cut(s) 408, 1087
Lsp1109I GCAGC 1 cut(s) 920
LweI GCATC 2 cut(s) 381, 895
MaeI CTAG 3 cut(s) 321, 996, 1098
MaeII ACGT 2 cut(s) 178, 833
MaeIII GTNAC 2 cut(s) 441, 829
MboII GAAGA 6 cut(s) 284, 374, 575, 587, 683, 744
MfeI CAATTG 1 cut(s) 733
MflI RGATCY 2 cut(s) 163, 811
MlsI TGGCCA 1 cut(s) 980
MluNI TGGCCA 1 cut(s) 980
MlyI GAGTC 1 cut(s) 19
Mox20I TGGCCA 1 cut(s) 980
MscI TGGCCA 1 cut(s) 980
MseI TTAA 2 cut(s) 155, 312
Msp20I TGGCCA 1 cut(s) 980
MspA1I CMGCKG 1 cut(s) 911
MspI CCGG 2 cut(s) 247, 405
MspR9I CCNGG 4 cut(s) 405, 406, 687, 1085
MunI CAATTG 1 cut(s) 733
MvaI CCWGG 2 cut(s) 687, 1085
MvnI CGCG 3 cut(s) 187, 252, 350
MwoI GCNNNNNNNGC 4 cut(s) 222, 247, 256, 423
NciI CCSGG 2 cut(s) 405, 406
NcoI CCATGG 2 cut(s) 143, 787
NlaIII CATG 6 cut(s) 147, 617, 715, 791, 896, 953
NlaIV GGNNCC 2 cut(s) 267, 1089
NmuCI GTSAC 2 cut(s) 441, 829
NspI RCATGY 1 cut(s) 896
PaeI GCATGC 1 cut(s) 896
PcsI WCGNNNNNNNCGW 1 cut(s) 184
PfeI GAWTC 2 cut(s) 566, 792
PkrI GCNGC 2 cut(s) 352, 910
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
Ppu21I YACGTR 1 cut(s) 179
Psp6I CCWGG 2 cut(s) 685, 1083
PspGI CCWGG 2 cut(s) 685, 1083
PspN4I GGNNCC 2 cut(s) 267, 1089
PsuI RGATCY 2 cut(s) 163, 811
RsaI GTAC 5 cut(s) 36, 61, 124, 177, 267
RsaNI GTAC 5 cut(s) 35, 60, 123, 176, 266
SalI GTCGAC 1 cut(s) 332
SaqAI TTAA 2 cut(s) 155, 312
SatI GCNGC 2 cut(s) 351, 909
ScaI AGTACT 2 cut(s) 61, 124
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 4 cut(s) 405, 406, 687, 1085
SfaNI GCATC 2 cut(s) 381, 895
SfcI CTRYAG 1 cut(s) 807
SmaI CCCGGG 1 cut(s) 406
SphI GCATGC 1 cut(s) 896
SsiI CCGC 3 cut(s) 350, 417, 911
SspMI CTAG 3 cut(s) 321, 996, 1098
StyD4I CCNGG 4 cut(s) 403, 404, 685, 1083
StyI CCWWGG 4 cut(s) 143, 167, 354, 787
TaaI ACNGT 4 cut(s) 136, 229, 725, 939
TaiI ACGT 2 cut(s) 181, 836
TaqI TCGA 5 cut(s) 333, 366, 586, 609, 924
TatI WGTACW 3 cut(s) 34, 59, 122
TauI GCSGC 1 cut(s) 353
TfiI GAWTC 2 cut(s) 566, 792
Tru1I TTAA 2 cut(s) 155, 312
Tru9I TTAA 2 cut(s) 155, 312
TscAI CASTG 1 cut(s) 234
TseFI GTSAC 2 cut(s) 441, 829
TseI GCWGC 1 cut(s) 908
Tsp45I GTSAC 2 cut(s) 441, 829
TspDTI ATGAA 4 cut(s) 84, 446, 588, 609
TspGWI ACGGA 1 cut(s) 917
TspMI CCCGGG 1 cut(s) 404
TspRI CASTG 1 cut(s) 234
XapI RAATTY 3 cut(s) 52, 757, 1030
XbaI TCTAGA 1 cut(s) 1097
XceI RCATGY 1 cut(s) 896
XmaI CCCGGG 1 cut(s) 404
XmiI GTMKAC 2 cut(s) 333, 990
XspI CTAG 3 cut(s) 321, 996, 1098
ZraI GACGTC 1 cut(s) 834
ZrmI AGTACT 2 cut(s) 61, 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.