FvH4_6g46730
TCP Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009855
Physical Location & Seq
Reverse (-)
35564264 .. 35566828
2565 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g46730.t1

Sequence Viewer

Length: 1101 bp
ATGATTAGGAGTCCCAATACTAATGAAGCAGATGTACAAGCACCAGCAGGAAACTCAAGTGCTCAAAATGAAGCTGGAAAGACCTCAAAATTAGCTTTGTCATCATCAACTTCTCGTTCAAGTACTTCAGCAACAGTAGCACCATGGATGAGGTTAAGTAAAGATCCAAGGATTGTACGCGTATCGCGTGCTTTTGGAGGAAAGGACAGGCATAGCAAAGTTTGCACTGTGAGAGGGTTGCGAGATCGGCGTGTGAGGCTTTCGGTACCTACTGCGATTCAGTTGTATGATCTTCAAGATAGGCTTGGCCTTAACCAGCCTAGCAAAGTTGTCGATTGGTTGCTTGACGCGGCCAAGGATGATATCGACCAACTTCCACCTCTTCCAATGATGCCTCCTGCTCCCGGGAGCTATGGCGGTGGTGGCCTAGGCCTAATGAATCATCAGTCGCTCCTGAATATTACTCCATCATCTCTTGATCAAAACATTGGAGATCATCAAGGGTTTAGAACCAATATTTGGAGATCGACAAATGATGGTGAAGAAGATCAAGAAAACGATAAAGATGGGGAAGAATCAGACGAAGATGATCATGGAAAACAAGAAGGGAATGTGGTTGATCACGGTTCATCATCATCAAACAACTTCTTGATGACCAGAACTAGTACTACTACCAATCATCCATTGTTCTTTCCAGGTCTTCTGAACAATAGTAATGCCATGCCTAATTACAGTTTTCACAATTGGGATCAGAACCAGTCTTCAAATTTTCCCCTATCTCATCAGTTGGGTAGCCATGGATTCACAGCTCACAATTTCAACGTGGCCTCCTTGCCTTCCACATTGTCTTTATCAACTGGAACAACGCAATCTTATTTTCCTTCGCATGCTACCACGGATGCAGCAGATCACCAGATCGATATTCCGAGACAGTTCGACCACCACATGCAGAATTCTCATCATCAAAACCTCTTGGCCAGTTCTGTATACCCTAGCCAGCAGTCTATGCAGAGAGCAACGCCTCAAAATTTGATGAGTATGATCACAAAGCTTGCTCATTCTTCTCAGCCAAATAAAGACCAGAAGCCTCCTTCTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

367

Amino Acids

40.19

Weight (kDa)

6.37

Isoelectric Point (pI)

51.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 67 - 142 1.1e-26 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 265
AccB1I GGYRCC 1 cut(s) 265
AccB7I CCANNNNNTGG 1 cut(s) 519
AccI GTMKAC 1 cut(s) 987
AccII CGCG 3 cut(s) 180, 187, 350
AciI CCGC 2 cut(s) 350, 417
AclWI GGATC 2 cut(s) 158, 756
AcoI YGGCCR 2 cut(s) 351, 975
AcsI RAATTY 3 cut(s) 766, 952, 1027
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 5 cut(s) 36, 124, 177, 267, 667
AfiI CCNNNNNNNGG 2 cut(s) 404, 519
AflIII ACRYGT 1 cut(s) 178
AgsI TTSAA 4 cut(s) 120, 296, 765, 820
AhlI ACTAGT 1 cut(s) 662
AjnI CCWGG 1 cut(s) 694
AjuI GAANNNNNNNTTGG 2 cut(s) 502, 534
AluBI AGCT 5 cut(s) 74, 95, 411, 809, 1051
AluI AGCT 5 cut(s) 74, 95, 411, 809, 1051
Alw21I GWGCWC 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 922
AlwI GGATC 2 cut(s) 158, 756
Ama87I CYCGRG 1 cut(s) 404
AoxI GGCC 6 cut(s) 307, 351, 424, 430, 825, 975
ApeKI GCWGC 1 cut(s) 902
ApoI RAATTY 3 cut(s) 766, 952, 1027
Asp718I GGTACC 1 cut(s) 265
AspA2I CCTAGG 1 cut(s) 427
AsuC2I CCSGG 2 cut(s) 405, 406
AsuHPI GGTGA 2 cut(s) 551, 902
AvaI CYCGRG 1 cut(s) 404
AvrII CCTAGG 1 cut(s) 427
BalI TGGCCA 1 cut(s) 977
BanI GGYRCC 1 cut(s) 265
BarI GAAGNNNNNNTAC 2 cut(s) 18, 50
BbsI GAAGAC 2 cut(s) 692, 753
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 1 cut(s) 914
BccI CCATC 3 cut(s) 475, 530, 560
BcgI CGANNNNNNTGC 2 cut(s) 313, 347
BciT130I CCWGG 1 cut(s) 696
BclI TGATCA 4 cut(s) 478, 589, 619, 1041
BcnI CCSGG 2 cut(s) 405, 406
BcoDI GTCTC 1 cut(s) 922
BcuI ACTAGT 1 cut(s) 662
BfaI CTAG 5 cut(s) 321, 428, 663, 993, 1095
BisI GCNGC 2 cut(s) 351, 903
BlnI CCTAGG 1 cut(s) 427
BlsI GCNGC 2 cut(s) 352, 904
BmcAI AGTACT 2 cut(s) 124, 667
Bme1390I CCNGG 3 cut(s) 405, 406, 696
BmeT110I CYCGRG 1 cut(s) 404
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 3 cut(s) 405, 406, 696
BmsI GCATC 2 cut(s) 381, 889
BpiI GAAGAC 2 cut(s) 692, 753
BpuEI CTTGAG 1 cut(s) 40
BpuMI CCSGG 2 cut(s) 405, 406
Bsa29I ATCGAT 1 cut(s) 918
BsaJI CCNNGG 7 cut(s) 143, 167, 354, 404, 427, 796, 894
BsaXI ACNNNNNCTCC 2 cut(s) 812, 842
Bsc4I CCNNNNNNNGG 2 cut(s) 404, 519
Bse1I ACTGG 3 cut(s) 757, 862, 978
BseBI CCWGG 1 cut(s) 696
BseCI ATCGAT 1 cut(s) 918
BseDI CCNNGG 7 cut(s) 143, 167, 354, 404, 427, 796, 894
BseGI GGATG 4 cut(s) 153, 364, 679, 904
BseLI CCNNNNNNNGG 2 cut(s) 404, 519
BseMII CTCAG 1 cut(s) 1079
BseNI ACTGG 3 cut(s) 757, 862, 978
BseXI GCAGC 1 cut(s) 914
Bsh1236I CGCG 3 cut(s) 180, 187, 350
BshFI GGCC 6 cut(s) 309, 353, 426, 432, 827, 977
BshNI GGYRCC 1 cut(s) 265
BshVI ATCGAT 1 cut(s) 918
BsiHKAI GWGCWC 1 cut(s) 64
BsiHKCI CYCGRG 1 cut(s) 404
BsiSI CCGG 1 cut(s) 405
BslI CCNNNNNNNGG 2 cut(s) 404, 519
BsmAI GTCTC 1 cut(s) 922
BsnI GGCC 6 cut(s) 309, 353, 426, 432, 827, 977
BsoBI CYCGRG 1 cut(s) 404
Bsp1286I GDGCHC 1 cut(s) 64
Bsp1407I TGTACA 1 cut(s) 34
Bsp19I CCATGG 2 cut(s) 143, 796
BspACI CCGC 2 cut(s) 350, 417
BspANI GGCC 6 cut(s) 309, 353, 426, 432, 827, 977
BspCNI CTCAG 1 cut(s) 1078
BspDI ATCGAT 1 cut(s) 918
BspFNI CGCG 3 cut(s) 180, 187, 350
BspLI GGNNCC 1 cut(s) 267
BspPI GGATC 2 cut(s) 158, 756
BspT107I GGYRCC 1 cut(s) 265
BsrGI TGTACA 1 cut(s) 34
BsrI ACTGG 3 cut(s) 757, 862, 978
BssECI CCNNGG 7 cut(s) 143, 167, 354, 404, 427, 796, 894
BssNAI GTATAC 1 cut(s) 988
BssT1I CCWWGG 5 cut(s) 143, 167, 354, 427, 796
Bst1107I GTATAC 1 cut(s) 988
Bst2UI CCWGG 1 cut(s) 696
Bst4CI ACNGT 5 cut(s) 136, 229, 626, 734, 933
Bst6I CTCTTC 1 cut(s) 387
BstAPI GCANNNNNTGC 2 cut(s) 222, 1006
BstAUI TGTACA 1 cut(s) 34
BstC8I GCNNGC 4 cut(s) 189, 888, 998, 1053
BstDEI CTNAG 1 cut(s) 1065
BstDSI CCRYGG 3 cut(s) 143, 796, 894
BstF5I GGATG 4 cut(s) 153, 364, 679, 904
BstFNI CGCG 3 cut(s) 180, 187, 350
BstMAI GTCTC 1 cut(s) 922
BstMWI GCNNNNNNNGC 6 cut(s) 137, 222, 247, 256, 423, 1006
BstNI CCWGG 1 cut(s) 696
BstNSI RCATGY 2 cut(s) 890, 949
BstSCI CCNGG 3 cut(s) 403, 404, 694
BstUI CGCG 3 cut(s) 180, 187, 350
BstV1I GCAGC 1 cut(s) 914
BstV2I GAAGAC 2 cut(s) 692, 753
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BstZ17I GTATAC 1 cut(s) 988
Bsu15I ATCGAT 1 cut(s) 918
BsuRI GGCC 6 cut(s) 309, 353, 426, 432, 827, 977
BsuTUI ATCGAT 1 cut(s) 918
BtgI CCRYGG 3 cut(s) 143, 796, 894
BtsCI GGATG 4 cut(s) 153, 364, 679, 904
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 4 cut(s) 189, 888, 998, 1053
Cfr9I CCCGGG 1 cut(s) 404
ClaI ATCGAT 1 cut(s) 918
CseI GACGC 1 cut(s) 356
Csp6I GTAC 5 cut(s) 35, 123, 176, 266, 666
CviAII CATG 6 cut(s) 144, 593, 721, 797, 887, 946
CviQI GTAC 5 cut(s) 35, 123, 176, 266, 666
DdeI CTNAG 1 cut(s) 1065
EaeI YGGCCR 2 cut(s) 351, 975
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Eco130I CCWWGG 5 cut(s) 143, 167, 354, 427, 796
Eco147I AGGCCT 1 cut(s) 432
Eco32I GATATC 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 111
Eco88I CYCGRG 1 cut(s) 404
EcoRI GAATTC 1 cut(s) 952
EcoRII CCWGG 1 cut(s) 694
EcoRV GATATC 1 cut(s) 364
EcoT14I CCWWGG 5 cut(s) 143, 167, 354, 427, 796
ErhI CCWWGG 5 cut(s) 143, 167, 354, 427, 796
FaeI CATG 6 cut(s) 147, 596, 724, 800, 890, 949
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FatI CATG 6 cut(s) 143, 592, 720, 796, 886, 945
FbaI TGATCA 4 cut(s) 478, 589, 619, 1041
FblI GTMKAC 1 cut(s) 987
Fnu4HI GCNGC 2 cut(s) 351, 903
FokI GGATG 4 cut(s) 160, 371, 666, 911
Fsp4HI GCNGC 2 cut(s) 351, 903
FspBI CTAG 5 cut(s) 321, 428, 663, 993, 1095
GluI GCNGC 2 cut(s) 351, 903
HaeIII GGCC 6 cut(s) 309, 353, 426, 432, 827, 977
HapII CCGG 1 cut(s) 405
HgaI GACGC 1 cut(s) 356
Hin1II CATG 6 cut(s) 147, 596, 724, 800, 890, 949
HindIII AAGCTT 1 cut(s) 1049
HinfI GANTC 5 cut(s) 10, 277, 439, 575, 801
HpaII CCGG 1 cut(s) 405
HphI GGTGA 2 cut(s) 551, 902
Hpy166II GTNNAC 1 cut(s) 988
Hpy188I TCNGA 4 cut(s) 580, 705, 753, 927
Hpy188III TCNNGA 5 cut(s) 296, 454, 476, 551, 649
Hpy8I GTNNAC 1 cut(s) 988
HpyAV CCTTC 4 cut(s) 599, 846, 891, 1101
HpyCH4III ACNGT 5 cut(s) 136, 229, 626, 734, 933
HpyCH4IV ACGT 1 cut(s) 822
HpyCH4V TGCA 4 cut(s) 225, 902, 949, 1009
HpyF10VI GCNNNNNNNGC 6 cut(s) 137, 222, 247, 256, 423, 1006
HpyF3I CTNAG 1 cut(s) 1065
HpySE526I ACGT 1 cut(s) 822
Hsp92II CATG 6 cut(s) 147, 596, 724, 800, 890, 949
KpnI GGTACC 1 cut(s) 269
Ksp22I TGATCA 4 cut(s) 478, 589, 619, 1041
LmnI GCTCC 3 cut(s) 406, 408, 456
Lsp1109I GCAGC 1 cut(s) 914
LweI GCATC 2 cut(s) 381, 889
MaeI CTAG 5 cut(s) 321, 428, 663, 993, 1095
MaeII ACGT 1 cut(s) 822
MboII GAAGA 9 cut(s) 284, 374, 554, 557, 584, 596, 692, 753, 1053
MfeI CAATTG 1 cut(s) 742
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 64
MlsI TGGCCA 1 cut(s) 977
MluCI AATT 7 cut(s) 89, 727, 742, 766, 814, 952, 1027
MluI ACGCGT 1 cut(s) 178
MluNI TGGCCA 1 cut(s) 977
MlyI GAGTC 1 cut(s) 19
Mox20I TGGCCA 1 cut(s) 977
MscI TGGCCA 1 cut(s) 977
MseI TTAA 2 cut(s) 155, 312
Msp20I TGGCCA 1 cut(s) 977
MspI CCGG 1 cut(s) 405
MspR9I CCNGG 3 cut(s) 405, 406, 696
MunI CAATTG 1 cut(s) 742
MvaI CCWGG 1 cut(s) 696
MvnI CGCG 3 cut(s) 180, 187, 350
MwoI GCNNNNNNNGC 6 cut(s) 137, 222, 247, 256, 423, 1006
NciI CCSGG 2 cut(s) 405, 406
NcoI CCATGG 2 cut(s) 143, 796
NlaIII CATG 6 cut(s) 147, 596, 724, 800, 890, 949
NlaIV GGNNCC 1 cut(s) 267
NspI RCATGY 2 cut(s) 890, 949
PaeI GCATGC 1 cut(s) 890
PceI AGGCCT 1 cut(s) 432
PcsI WCGNNNNNNNCGW 1 cut(s) 184
PfeI GAWTC 4 cut(s) 277, 439, 575, 801
PflMI CCANNNNNTGG 1 cut(s) 519
PkrI GCNGC 2 cut(s) 352, 904
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 694
PspGI CCWGG 1 cut(s) 694
PspN4I GGNNCC 1 cut(s) 267
PsrI GAACNNNNNNTAC 2 cut(s) 652, 684
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 5 cut(s) 36, 124, 177, 267, 667
RsaNI GTAC 5 cut(s) 35, 123, 176, 266, 666
SaqAI TTAA 2 cut(s) 155, 312
SatI GCNGC 2 cut(s) 351, 903
ScaI AGTACT 2 cut(s) 124, 667
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 3 cut(s) 405, 406, 696
SduI GDGCHC 1 cut(s) 64
SfaNI GCATC 2 cut(s) 381, 889
SmaI CCCGGG 1 cut(s) 406
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
SpeI ACTAGT 1 cut(s) 662
SphI GCATGC 1 cut(s) 890
Sse9I AATT 7 cut(s) 89, 727, 742, 766, 814, 952, 1027
SseBI AGGCCT 1 cut(s) 432
SsiI CCGC 2 cut(s) 350, 417
SspI AATATT 2 cut(s) 460, 517
SspMI CTAG 5 cut(s) 321, 428, 663, 993, 1095
StuI AGGCCT 1 cut(s) 432
StyD4I CCNGG 3 cut(s) 403, 404, 694
StyI CCWWGG 5 cut(s) 143, 167, 354, 427, 796
TaaI ACNGT 5 cut(s) 136, 229, 626, 734, 933
TaiI ACGT 1 cut(s) 825
TaqI TCGA 5 cut(s) 333, 366, 527, 918, 936
TasI AATT 7 cut(s) 89, 727, 742, 766, 814, 952, 1027
TatI WGTACW 3 cut(s) 34, 122, 665
TauI GCSGC 1 cut(s) 353
TfiI GAWTC 4 cut(s) 277, 439, 575, 801
Tru1I TTAA 2 cut(s) 155, 312
Tru9I TTAA 2 cut(s) 155, 312
TscAI CASTG 1 cut(s) 232
TseI GCWGC 1 cut(s) 902
TspDTI ATGAA 4 cut(s) 39, 84, 452, 618
TspGWI ACGGA 1 cut(s) 911
TspMI CCCGGG 1 cut(s) 404
TspRI CASTG 1 cut(s) 232
Van91I CCANNNNNTGG 1 cut(s) 519
XapI RAATTY 3 cut(s) 766, 952, 1027
XceI RCATGY 2 cut(s) 890, 949
XmaI CCCGGG 1 cut(s) 404
XmaJI CCTAGG 1 cut(s) 427
XmiI GTMKAC 1 cut(s) 987
XspI CTAG 5 cut(s) 321, 428, 663, 993, 1095
ZrmI AGTACT 2 cut(s) 124, 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.