Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001441.1

Orthogroup ID

OG0009855

Physical Location & Seq

Genomic Coordinates Reverse (-)

24512 .. 25615

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001441.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

atgattaggagtcccaatactaatgaagcagatgtacagggaccagaaggaaattcaagtactcataatgaagctggcaagacctcaagagtagctttgtcatcatctatttctcgttcaagtacttcaacaacagtagcaccatggatgaggttaagtaaagatccaaggattgtacgtgtgtcgcgtgcttttggaggaaaggacaggcatagcaaagtttgcactgtgagagggttgcgagaccggcgcgtgaggctttcggtacctactgctattcagttatatgatcttcaagataggcttggccttaaccagcctagcaaagtcgtcgattggttgcttgacgcggccaaggatgatatcgaccaacttccacctcttccgatgatgcctcctgcccccgggagctatggcggtggtggcctaatgaatcaacagtcactcctgaatatcattccatcatctcttgatcaaaacattggagatcaagggtttagaagcaatatttggagatcaacaaatgatgatgaaaaagatcgagaaaatgataaagatgtggaagaatcagatgaagatgatcatcgacagcaaggagggaatgttgtcgatcatggttcatcatcatcaaacaacttcttgatgacccgaagtagtgctactaccaatcatccattgttctttccgggtcttctgaacaatagtaatgccatgcctaattacggttttcacaattgggatcacaatcagtcttcaaattttcccctatctcatcaattaggaagccatggattgacatctcaacatacagatccccacaatttcaatgtggcgtccttgccttccacattgtctttatctactggaacaacgcaagcttattttccttcgcatgctactacgaatgcagcggatcatcagatcaatattccgagacagttcaacctccatatgcaaaatcctcatcaaaacctcttggccaattctgtatacccaagtagccagtctatgcagagagcaacgccccaaaatttgatgagtatgattacaaagcttgcccattcttctcagccaaataaagaccaggagcctccttctagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

367

Amino Acids

40.47

Weight (kDa)

6.59

Isoelectric Point (pI)

55.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02150 AT3G02150
fragaria_vesca	FvH4_6g46730
malus_domestica	MD09G1068200.v1.1 MD17G1061100.v1.1
prunus_persica	Prupe.3G252600_v2.0.a1
pyrus_communis	pycom12433g00140 pycom17g06080
rosa_chinensis	RchiOBHm_Chr2g0165641
rosa_laevigata	RLG00000021544
rosa_multiflora	Rmu_sc0001441.1_g000008 Rmu_sc0001522.1_g000029
rosa_roxburghii	Rroxscaffold_2G00085680
rosa_rugosa	Rorug02G0516400 Rorug02G0516400
rosa_samantha	Rh2AG582900 Rh2BG594900 Rh2CG564800 Rh2DG604700
rosa_wichuraiana	Rw0G011330 Rw0G016040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	265
AccB1I	GGYRCC	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	990
AccII	CGCG	3 cut(s)	187, 252, 350
AciI	CCGC	3 cut(s)	350, 417, 911
AclWI	GGATC	4 cut(s)	158, 747, 806, 921
AcoI	YGGCCR	2 cut(s)	351, 978
AcsI	RAATTY	3 cut(s)	52, 757, 1030
AcyI	GRCGYC	1 cut(s)	833
AfaI	GTAC	5 cut(s)	36, 61, 124, 177, 267
AfiI	CCNNNNNNNGG	2 cut(s)	404, 722
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	7 cut(s)	57, 120, 129, 296, 756, 826, 943
AjnI	CCWGG	1 cut(s)	1083
AjuI	GAANNNNNNNTTGG	2 cut(s)	493, 525
AluBI	AGCT	5 cut(s)	74, 95, 411, 878, 1054
AluI	AGCT	5 cut(s)	74, 95, 411, 878, 1054
Alw26I	GTCTC	2 cut(s)	237, 928
AlwI	GGATC	4 cut(s)	158, 747, 806, 921
Ama87I	CYCGRG	1 cut(s)	404
AoxI	GGCC	4 cut(s)	307, 351, 424, 978
ApeKI	GCWGC	1 cut(s)	908
ApoI	RAATTY	3 cut(s)	52, 757, 1030
Asp718I	GGTACC	1 cut(s)	265
AspLEI	GCGC	1 cut(s)	252
AspS9I	GGNCC	1 cut(s)	41
AsuC2I	CCSGG	3 cut(s)	405, 406, 687
AvaI	CYCGRG	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	41
BalI	TGGCCA	1 cut(s)	980
BanI	GGYRCC	1 cut(s)	265
BarI	GAAGNNNNNNTAC	4 cut(s)	18, 50, 643, 675
BbsI	GAAGAC	2 cut(s)	683, 744
BbvI	GCAGC	1 cut(s)	920
BccI	CCATC	1 cut(s)	469
BcgI	CGANNNNNNTGC	2 cut(s)	313, 347
BciT130I	CCWGG	1 cut(s)	1085
BclI	TGATCA	2 cut(s)	472, 580
BcnI	CCSGG	3 cut(s)	405, 406, 687
BcoDI	GTCTC	2 cut(s)	237, 928
BfaI	CTAG	2 cut(s)	321, 1098
BisI	GCNGC	2 cut(s)	351, 909
BlsI	GCNGC	2 cut(s)	352, 910
BmcAI	AGTACT	2 cut(s)	61, 124
Bme1390I	CCNGG	4 cut(s)	405, 406, 687, 1085
Bme18I	GGWCC	1 cut(s)	41
BmeT110I	CYCGRG	1 cut(s)	404
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	3 cut(s)	42, 267, 1089
BmrFI	CCNGG	4 cut(s)	405, 406, 687, 1085
BmsI	GCATC	1 cut(s)	381
BpiI	GAAGAC	2 cut(s)	683, 744
BpuEI	CTTGAG	1 cut(s)	70
BpuMI	CCSGG	3 cut(s)	405, 406, 687
BsaAI	YACGTR	1 cut(s)	179
BsaBI	GATNNNNATC	3 cut(s)	582, 744, 796
BsaHI	GRCGYC	1 cut(s)	833
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	6 cut(s)	143, 167, 354, 403, 404, 787
BsaXI	ACNNNNNCTCC	4 cut(s)	429, 459, 588, 618
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 722
Bse118I	RCCGGY	1 cut(s)	246
Bse1I	ACTGG	2 cut(s)	868, 1003
Bse8I	GATNNNNATC	3 cut(s)	582, 744, 796
BseBI	CCWGG	1 cut(s)	1085
BseDI	CCNNGG	6 cut(s)	143, 167, 354, 403, 404, 787
BseGI	GGATG	3 cut(s)	153, 364, 670
BseJI	GATNNNNATC	3 cut(s)	582, 744, 796
BseLI	CCNNNNNNNGG	2 cut(s)	404, 722
BseMII	CTCAG	1 cut(s)	1082
BseNI	ACTGG	2 cut(s)	868, 1003
BseXI	GCAGC	1 cut(s)	920
Bsh1236I	CGCG	3 cut(s)	187, 252, 350
BshFI	GGCC	4 cut(s)	309, 353, 426, 980
BshNI	GGYRCC	1 cut(s)	265
BsiHKCI	CYCGRG	1 cut(s)	404
BsiSI	CCGG	3 cut(s)	247, 405, 686
BslFI	GGGAC	1 cut(s)	54
BslI	CCNNNNNNNGG	2 cut(s)	404, 722
BsmAI	GTCTC	2 cut(s)	237, 928
BsmFI	GGGAC	1 cut(s)	54
BsmI	GAATGC	1 cut(s)	910
BsnI	GGCC	4 cut(s)	309, 353, 426, 980
Bso31I	GGTCTC	1 cut(s)	237
BsoBI	CYCGRG	1 cut(s)	404
Bsp1407I	TGTACA	1 cut(s)	34
Bsp19I	CCATGG	2 cut(s)	143, 787
BspACI	CCGC	3 cut(s)	350, 417, 911
BspANI	GGCC	4 cut(s)	309, 353, 426, 980
BspCNI	CTCAG	1 cut(s)	1081
BspFNI	CGCG	3 cut(s)	187, 252, 350
BspLI	GGNNCC	3 cut(s)	42, 267, 1089
BspPI	GGATC	4 cut(s)	158, 747, 806, 921
BspT107I	GGYRCC	1 cut(s)	265
BspTNI	GGTCTC	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	246
BsrGI	TGTACA	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	868, 1003
BssAI	RCCGGY	1 cut(s)	246
BssECI	CCNNGG	6 cut(s)	143, 167, 354, 403, 404, 787
BssNAI	GTATAC	1 cut(s)	991
BssNI	GRCGYC	1 cut(s)	833
BssT1I	CCWWGG	4 cut(s)	143, 167, 354, 787
Bst1107I	GTATAC	1 cut(s)	991
Bst2UI	CCWGG	1 cut(s)	1085
Bst4CI	ACNGT	5 cut(s)	136, 229, 441, 725, 939
Bst6I	CTCTTC	1 cut(s)	387
BstACI	GRCGYC	1 cut(s)	833
BstAPI	GCANNNNNTGC	1 cut(s)	222
BstAUI	TGTACA	1 cut(s)	34
BstBAI	YACGTR	1 cut(s)	179
BstC8I	GCNNGC	5 cut(s)	76, 189, 876, 894, 1056
BstDEI	CTNAG	1 cut(s)	1068
BstDSI	CCRYGG	2 cut(s)	143, 787
BstF5I	GGATG	3 cut(s)	153, 364, 670
BstFNI	CGCG	3 cut(s)	187, 252, 350
BstHHI	GCGC	1 cut(s)	252
BstMAI	GTCTC	2 cut(s)	237, 928
BstMWI	GCNNNNNNNGC	4 cut(s)	222, 247, 256, 423
BstNI	CCWGG	1 cut(s)	1085
BstNSI	RCATGY	1 cut(s)	896
BstSCI	CCNGG	4 cut(s)	403, 404, 685, 1083
BstUI	CGCG	3 cut(s)	187, 252, 350
BstV1I	GCAGC	1 cut(s)	920
BstV2I	GAAGAC	2 cut(s)	683, 744
BstX2I	RGATCY	2 cut(s)	163, 811
BstYI	RGATCY	2 cut(s)	163, 811
BstZ17I	GTATAC	1 cut(s)	991
BsuRI	GGCC	4 cut(s)	309, 353, 426, 980
BtgI	CCRYGG	2 cut(s)	143, 787
BtsCI	GGATG	3 cut(s)	153, 364, 670
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	5 cut(s)	76, 189, 876, 894, 1056
CfoI	GCGC	1 cut(s)	252
Cfr10I	RCCGGY	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	41
Cfr9I	CCCGGG	1 cut(s)	404
CseI	GACGC	2 cut(s)	356, 822
Csp6I	GTAC	5 cut(s)	35, 60, 123, 176, 266
CviAII	CATG	5 cut(s)	144, 614, 712, 788, 893
CviQI	GTAC	5 cut(s)	35, 60, 123, 176, 266
DdeI	CTNAG	1 cut(s)	1068
EaeI	YGGCCR	2 cut(s)	351, 978
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco130I	CCWWGG	4 cut(s)	143, 167, 354, 787
Eco31I	GGTCTC	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	364
Eco47I	GGWCC	1 cut(s)	41
Eco88I	CYCGRG	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	1083
EcoRV	GATATC	1 cut(s)	364
EcoT14I	CCWWGG	4 cut(s)	143, 167, 354, 787
ErhI	CCWWGG	4 cut(s)	143, 167, 354, 787
FaeI	CATG	5 cut(s)	147, 617, 715, 791, 896
FalI	AAGNNNNNCTT	4 cut(s)	79, 111, 288, 320
FaqI	GGGAC	1 cut(s)	54
FatI	CATG	5 cut(s)	143, 613, 711, 787, 892
FauNDI	CATATG	1 cut(s)	951
FbaI	TGATCA	2 cut(s)	472, 580
FblI	GTMKAC	1 cut(s)	990
Fnu4HI	GCNGC	2 cut(s)	351, 909
FokI	GGATG	3 cut(s)	160, 371, 657
Fsp4HI	GCNGC	2 cut(s)	351, 909
FspBI	CTAG	2 cut(s)	321, 1098
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	2 cut(s)	351, 909
HaeIII	GGCC	4 cut(s)	309, 353, 426, 980
HapII	CCGG	3 cut(s)	247, 405, 686
HgaI	GACGC	2 cut(s)	356, 822
HhaI	GCGC	1 cut(s)	252
Hin1I	GRCGYC	1 cut(s)	833
Hin1II	CATG	5 cut(s)	147, 617, 715, 791, 896
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HindIII	AAGCTT	2 cut(s)	876, 1052
HinfI	GANTC	3 cut(s)	10, 433, 566
HpaII	CCGG	3 cut(s)	247, 405, 686
Hpy166II	GTNNAC	1 cut(s)	991
Hpy188I	TCNGA	5 cut(s)	387, 571, 696, 921, 933
Hpy188III	TCNNGA	7 cut(s)	87, 296, 448, 470, 542, 640, 1098
Hpy8I	GTNNAC	1 cut(s)	991
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	4 cut(s)	41, 852, 897, 1104
HpyCH4III	ACNGT	5 cut(s)	136, 229, 441, 725, 939
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	4 cut(s)	225, 908, 955, 1012
HpyF10VI	GCNNNNNNNGC	4 cut(s)	222, 247, 256, 423
HpyF3I	CTNAG	1 cut(s)	1068
HpySE526I	ACGT	1 cut(s)	178
Hsp92I	GRCGYC	1 cut(s)	833
Hsp92II	CATG	5 cut(s)	147, 617, 715, 791, 896
HspAI	GCGC	1 cut(s)	250
KpnI	GGTACC	1 cut(s)	269
Ksp22I	TGATCA	2 cut(s)	472, 580
LmnI	GCTCC	2 cut(s)	408, 1087
Lsp1109I	GCAGC	1 cut(s)	920
LweI	GCATC	1 cut(s)	381
MaeI	CTAG	2 cut(s)	321, 1098
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	1 cut(s)	441
MboII	GAAGA	7 cut(s)	284, 374, 575, 587, 683, 744, 1056
MfeI	CAATTG	1 cut(s)	733
MflI	RGATCY	2 cut(s)	163, 811
MlsI	TGGCCA	1 cut(s)	980
MluCI	AATT	8 cut(s)	52, 718, 733, 757, 776, 820, 982, 1030
MluNI	TGGCCA	1 cut(s)	980
MlyI	GAGTC	1 cut(s)	19
Mox20I	TGGCCA	1 cut(s)	980
MscI	TGGCCA	1 cut(s)	980
MseI	TTAA	2 cut(s)	155, 312
Msp20I	TGGCCA	1 cut(s)	980
MspA1I	CMGCKG	1 cut(s)	911
MspI	CCGG	3 cut(s)	247, 405, 686
MspR9I	CCNGG	4 cut(s)	405, 406, 687, 1085
MunI	CAATTG	1 cut(s)	733
Mva1269I	GAATGC	1 cut(s)	910
MvaI	CCWGG	1 cut(s)	1085
MvnI	CGCG	3 cut(s)	187, 252, 350
MwoI	GCNNNNNNNGC	4 cut(s)	222, 247, 256, 423
NciI	CCSGG	3 cut(s)	405, 406, 687
NcoI	CCATGG	2 cut(s)	143, 787
NdeI	CATATG	1 cut(s)	951
NlaIII	CATG	5 cut(s)	147, 617, 715, 791, 896
NlaIV	GGNNCC	3 cut(s)	42, 267, 1089
NmuCI	GTSAC	1 cut(s)	441
NspI	RCATGY	1 cut(s)	896
PaeI	GCATGC	1 cut(s)	896
PcsI	WCGNNNNNNNCGW	1 cut(s)	184
PctI	GAATGC	1 cut(s)	910
PfeI	GAWTC	2 cut(s)	433, 566
PkrI	GCNGC	2 cut(s)	352, 910
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
Ppu21I	YACGTR	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	1083
PspGI	CCWGG	1 cut(s)	1083
PspN4I	GGNNCC	3 cut(s)	42, 267, 1089
PspPI	GGNCC	1 cut(s)	41
PsuI	RGATCY	2 cut(s)	163, 811
RsaI	GTAC	5 cut(s)	36, 61, 124, 177, 267
RsaNI	GTAC	5 cut(s)	35, 60, 123, 176, 266
SaqAI	TTAA	2 cut(s)	155, 312
SatI	GCNGC	2 cut(s)	351, 909
Sau96I	GGNCC	1 cut(s)	41
ScaI	AGTACT	2 cut(s)	61, 124
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	4 cut(s)	405, 406, 687, 1085
SfaNI	GCATC	1 cut(s)	381
SinI	GGWCC	1 cut(s)	41
SmaI	CCCGGG	1 cut(s)	406
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
SphI	GCATGC	1 cut(s)	896
Sse9I	AATT	8 cut(s)	52, 718, 733, 757, 776, 820, 982, 1030
SsiI	CCGC	3 cut(s)	350, 417, 911
SspI	AATATT	2 cut(s)	508, 928
SspMI	CTAG	2 cut(s)	321, 1098
StyD4I	CCNGG	4 cut(s)	403, 404, 685, 1083
StyI	CCWWGG	4 cut(s)	143, 167, 354, 787
TaaI	ACNGT	5 cut(s)	136, 229, 441, 725, 939
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	5 cut(s)	333, 366, 541, 586, 609
TasI	AATT	8 cut(s)	52, 718, 733, 757, 776, 820, 982, 1030
TatI	WGTACW	3 cut(s)	34, 59, 122
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	2 cut(s)	433, 566
Tru1I	TTAA	2 cut(s)	155, 312
Tru9I	TTAA	2 cut(s)	155, 312
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	1 cut(s)	441
TseI	GCWGC	1 cut(s)	908
Tsp45I	GTSAC	1 cut(s)	441
TspDTI	ATGAA	6 cut(s)	39, 84, 446, 546, 588, 609
TspMI	CCCGGG	1 cut(s)	404
TspRI	CASTG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	41
XapI	RAATTY	3 cut(s)	52, 757, 1030
XbaI	TCTAGA	1 cut(s)	1097
XceI	RCATGY	1 cut(s)	896
XmaI	CCCGGG	1 cut(s)	404
XmiI	GTMKAC	1 cut(s)	990
XspI	CTAG	2 cut(s)	321, 1098
ZrmI	AGTACT	2 cut(s)	61, 124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.