Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001522.1

Orthogroup ID

OG0009855

Physical Location & Seq

Genomic Coordinates Reverse (-)

126997 .. 127514

Gene Structure 518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001522.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atggtttcttctttccctgatttgaatcatcaagattcaaatcatcttgctcgtccgattcccactgccgctgcgtctcaatccaccttcatgcaccacagatgtttctggactgcttcttcctccaccgctagcgaaatcgtggaggctcaaggccacattctaagggccaccggccggaaggacagccacaataaggtttgcaccaccaaaggccccagggatcgcagtatcaggctcgtcgccgacaccgccattcaattctacgacatgcaggaccggcttggatacgaccagcctagcaaggtcgtcgattggccgcacaggactgaactaaatcacagtagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

116

Amino Acids

13.06

Weight (kDa)

7.92

Isoelectric Point (pI)

57.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02150 AT3G02150
fragaria_vesca	FvH4_6g46730
malus_domestica	MD09G1068200.v1.1 MD17G1061100.v1.1
prunus_persica	Prupe.3G252600_v2.0.a1
pyrus_communis	pycom12433g00140 pycom17g06080
rosa_chinensis	RchiOBHm_Chr2g0165641
rosa_laevigata	RLG00000021544
rosa_multiflora	Rmu_sc0001441.1_g000008 Rmu_sc0001522.1_g000029
rosa_roxburghii	Rroxscaffold_2G00085680
rosa_rugosa	Rorug02G0516400 Rorug02G0516400
rosa_samantha	Rh2AG582900 Rh2BG594900 Rh2CG564800 Rh2DG604700
rosa_wichuraiana	Rw0G011330 Rw0G016040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	69, 129, 252, 320
AclWI	GGATC	1 cut(s)	231
AcoI	YGGCCR	2 cut(s)	175, 317
AfiI	CCNNNNNNNGG	2 cut(s)	177, 196
AgsI	TTSAA	3 cut(s)	25, 39, 260
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	1 cut(s)	348
AluI	AGCT	1 cut(s)	348
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	1 cut(s)	231
AoxI	GGCC	5 cut(s)	154, 168, 175, 214, 317
ApeKI	GCWGC	1 cut(s)	71
AspS9I	GGNCC	3 cut(s)	168, 215, 277
AsuNHI	GCTAGC	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	58
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BciT130I	CCWGG	1 cut(s)	220
BciVI	GTATCC	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	3 cut(s)	132, 300, 349
BfuI	GTATCC	1 cut(s)	281
BisI	GCNGC	3 cut(s)	69, 72, 320
BlsI	GCNGC	3 cut(s)	70, 73, 321
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	3 cut(s)	168, 215, 277
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	220
BmtI	GCTAGC	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	135
BsaBI	GATNNNNATC	2 cut(s)	24, 39
BsaJI	CCNNGG	2 cut(s)	218, 219
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 196
Bse118I	RCCGGY	2 cut(s)	173, 279
Bse8I	GATNNNNATC	2 cut(s)	24, 39
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	2 cut(s)	218, 219
BseJI	GATNNNNATC	2 cut(s)	24, 39
BseLI	CCNNNNNNNGG	2 cut(s)	177, 196
BseX3I	CGGCCG	1 cut(s)	175
BseXI	GCAGC	1 cut(s)	58
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	5 cut(s)	156, 170, 177, 216, 319
BsiEI	CGRYCG	1 cut(s)	178
BsiSI	CCGG	3 cut(s)	174, 178, 280
BslI	CCNNNNNNNGG	2 cut(s)	177, 196
BsmAI	GTCTC	1 cut(s)	81
BsmBI	CGTCTC	1 cut(s)	81
BsnI	GGCC	5 cut(s)	156, 170, 177, 216, 319
Bsp143I	GATC	1 cut(s)	223
BspACI	CCGC	4 cut(s)	69, 129, 252, 320
BspANI	GGCC	5 cut(s)	156, 170, 177, 216, 319
BspLI	GGNNCC	1 cut(s)	217
BspOI	GCTAGC	1 cut(s)	135
BspPI	GGATC	1 cut(s)	231
BsrFI	RCCGGY	2 cut(s)	173, 279
BssAI	RCCGGY	2 cut(s)	173, 279
BssECI	CCNNGG	2 cut(s)	218, 219
BssMI	GATC	1 cut(s)	223
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	164
BstKTI	GATC	1 cut(s)	226
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	223
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 280
BstNI	CCWGG	1 cut(s)	220
BstNSI	RCATGY	1 cut(s)	274
BstSCI	CCNGG	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	58
BstZI	CGGCCG	1 cut(s)	175
BsuI	GTATCC	1 cut(s)	281
BsuRI	GGCC	5 cut(s)	156, 170, 177, 216, 319
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	133
Cfr10I	RCCGGY	2 cut(s)	173, 279
Cfr13I	GGNCC	3 cut(s)	168, 215, 277
CseI	GACGC	1 cut(s)	63
CviAII	CATG	2 cut(s)	91, 271
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
EaeI	YGGCCR	2 cut(s)	175, 317
EagI	CGGCCG	1 cut(s)	175
EclXI	CGGCCG	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	277
Eco52I	CGGCCG	1 cut(s)	175
EcoO109I	RGGNCCY	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	218
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	2 cut(s)	94, 274
FaiI	YATR	2 cut(s)	92, 272
FatI	CATG	2 cut(s)	90, 270
Fnu4HI	GCNGC	3 cut(s)	69, 72, 320
Fsp4HI	GCNGC	3 cut(s)	69, 72, 320
FspBI	CTAG	3 cut(s)	132, 300, 349
GluI	GCNGC	3 cut(s)	69, 72, 320
HaeIII	GGCC	5 cut(s)	156, 170, 177, 216, 319
HapII	CCGG	3 cut(s)	174, 178, 280
HgaI	GACGC	1 cut(s)	63
Hin1II	CATG	2 cut(s)	94, 274
HinfI	GANTC	3 cut(s)	25, 35, 58
HpaII	CCGG	3 cut(s)	174, 178, 280
Hpy188I	TCNGA	1 cut(s)	57
Hpy188III	TCNNGA	2 cut(s)	32, 109
Hpy99I	CGWCG	2 cut(s)	245, 314
HpyAV	CCTTC	2 cut(s)	97, 175
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4V	TGCA	3 cut(s)	94, 204, 274
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 280
HpyF3I	CTNAG	1 cut(s)	164
Hsp92II	CATG	2 cut(s)	94, 274
Kzo9I	GATC	1 cut(s)	223
Lsp1109I	GCAGC	1 cut(s)	58
MaeI	CTAG	3 cut(s)	132, 300, 349
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	1 cut(s)	111
MluCI	AATT	1 cut(s)	260
MnlI	CCTC	2 cut(s)	133, 139
MslI	CAYNNNNRTG	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	3 cut(s)	174, 178, 280
MspR9I	CCNGG	1 cut(s)	220
MvaI	CCWGG	1 cut(s)	220
MwoI	GCNNNNNNNGC	2 cut(s)	251, 280
NdeII	GATC	1 cut(s)	223
NheI	GCTAGC	1 cut(s)	131
NlaIII	CATG	2 cut(s)	94, 274
NlaIV	GGNNCC	1 cut(s)	217
NspI	RCATGY	1 cut(s)	274
PasI	CCCWGGG	1 cut(s)	219
PfeI	GAWTC	3 cut(s)	25, 35, 58
PkrI	GCNGC	3 cut(s)	70, 73, 321
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	3 cut(s)	168, 215, 277
RseI	CAYNNNNRTG	1 cut(s)	89
SatI	GCNGC	3 cut(s)	69, 72, 320
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	3 cut(s)	168, 215, 277
ScrFI	CCNGG	1 cut(s)	220
SetI	ASST	4 cut(s)	89, 201, 309, 350
SinI	GGWCC	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
Sse9I	AATT	1 cut(s)	260
SsiI	CCGC	4 cut(s)	69, 129, 252, 320
SspMI	CTAG	3 cut(s)	132, 300, 349
StyD4I	CCNGG	1 cut(s)	218
TaaI	ACNGT	1 cut(s)	344
TaqI	TCGA	1 cut(s)	312
TasI	AATT	1 cut(s)	260
TauI	GCSGC	2 cut(s)	71, 322
TfiI	GAWTC	3 cut(s)	25, 35, 58
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	1 cut(s)	71
TspDTI	ATGAA	1 cut(s)	79
TspRI	CASTG	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	277
XceI	RCATGY	1 cut(s)	274
XspI	CTAG	3 cut(s)	132, 300, 349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.