Prupe.3G252600_v2.0.a1
TCP Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0009855
Physical Location & Seq
Reverse (-)
24210187 .. 24212643
2457 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G252600.1

Sequence Viewer

Length: 1131 bp
ATGATTAAGAGTCACAATGGAGCAGATTTACAAGAAGCAGCAGGCAATTCAAGCCGTGATGATCAAGCCAATAAATTCTCAACAAAAGCTAATGATTTGTCGCGTCCATCGACACCATGGCTAAGGTTGAAGGATCCAAGGATTGTGCGTGTGTCAAGAGCTTTTGGAGGAAAGGACAGGCACAGCAAGGTTTGCACCGTAAAAGGGCTTCGAGATCGGCGGGTGAGGCTTTCTGTACCCACTGCTATACAGTTGTATGACCTTCAAGAAAGGCTTGGTCTTAACCAGCCTAGCAAAGTTGTCGATTGGTTGCTTGACGCCGCGAAGCACGAAATTGATGAACTTCCTCCGCTGCCGCTGCCACCATCTGGGAATTTCGGCCTAAATCACCCATCATTAGTCCTCACTTCATCTCATGGTGTCCAAACCCATGCTCATGCCCAATTATCTCATGATAATGGAGAAGGTCCTAGTGGTGGAATTGCACAGGCCAGATCACATTTTTGGAGCACAAATTCGGATGCTATTTGGAGAGGGAAATCAAAAGAAATTGCAAGAGACACAACAAATGAGGAGGAAGAAGAAAATCAGAAAGATATAAGCACTGGATCAGACCAAAAGGAAGAAGGAACTGTTGATGGTAATTCATCATCAAACAACTTCTTAACCAGAATTAGCACCAACCATCCATTCTTTCCAGGTCTTGTCAATAATGCCATGCCTTATGCTTACCATAATTGGGATCATAATCAGCCTTCAAATTTCCCACTATCTCAATTAGGAAGCCATGGATTCCCATCCCAAACTGCAGATCTCCACAACTTCATTAACGTCGTCTCGTTGCCCTCCACATTGTCTTTATCTACAACACAATCTTATTTCCCTTCACATAATGCTGCGGCTGCAGCAGAGATCGATCCGAGACAATTCAACCACATGCATATGTTAAGCTCAAGCAGTACTTCTCAGAACCTCTTGCCAAATTCTCTTTCACCAACTCTATACCCTAATAGCCAGACCCTGAGAGCACCCCATTTGAGCATGATGACTAAGCTTGTGCGTTCTTCAAACAACACTACTGGAAGTGATCATCATCAGCCAAATACAGACCAGGAGTCTCCTTCTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

377

Amino Acids

41.41

Weight (kDa)

6.7

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 368
AccII CGCG 2 cut(s) 103, 323
AciI CCGC 5 cut(s) 220, 321, 350, 356, 899
AclWI GGATC 5 cut(s) 128, 141, 616, 750, 911
AcsI RAATTY 5 cut(s) 74, 373, 514, 760, 982
AcyI GRCGYC 1 cut(s) 318
AfaI GTAC 2 cut(s) 237, 961
AfiI CCNNNNNNNGG 4 cut(s) 204, 368, 476, 739
AgsI TTSAA 6 cut(s) 51, 130, 266, 759, 931, 1068
AhdI GACNNNNNGTC 1 cut(s) 1114
AjnI CCWGG 2 cut(s) 697, 1110
AjuI GAANNNNNNNTTGG 4 cut(s) 674, 706, 973, 1005
AluBI AGCT 4 cut(s) 89, 161, 951, 1054
AluI AGCT 4 cut(s) 89, 161, 951, 1054
Alw21I GWGCWC 2 cut(s) 512, 1030
Alw26I GTCTC 4 cut(s) 552, 841, 916, 1122
AlwI GGATC 5 cut(s) 128, 141, 616, 750, 911
AlwNI CAGNNNCTG 1 cut(s) 1021
AoxI GGCC 2 cut(s) 379, 489
ApeKI GCWGC 6 cut(s) 38, 352, 358, 896, 902, 905
ApoI RAATTY 5 cut(s) 74, 373, 514, 760, 982
AspS9I GGNCC 1 cut(s) 467
AsuHPI GGTGA 3 cut(s) 235, 380, 984
AvaII GGWCC 1 cut(s) 467
BamHI GGATCC 1 cut(s) 133
BarI GAAGNNNNNNTAC 2 cut(s) 192, 224
Bbv12I GWGCWC 2 cut(s) 512, 1030
BbvI GCAGC 6 cut(s) 50, 339, 345, 883, 889, 917
BccI CCATC 6 cut(s) 115, 373, 400, 632, 693, 805
BceAI ACGGC 1 cut(s) 39
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BciT130I CCWGG 2 cut(s) 699, 1112
BclI TGATCA 2 cut(s) 61, 1087
BcoDI GTCTC 4 cut(s) 552, 841, 916, 1122
BfaI CTAG 3 cut(s) 291, 471, 1125
BfmI CTRYAG 2 cut(s) 807, 903
BglII AGATCT 1 cut(s) 811
BisI GCNGC 9 cut(s) 39, 321, 353, 356, 359, 897, 900, 903, 906
BlsI GCNGC 9 cut(s) 40, 322, 354, 357, 360, 898, 901, 904, 907
BmcAI AGTACT 1 cut(s) 961
Bme1390I CCNGG 2 cut(s) 699, 1112
Bme18I GGWCC 1 cut(s) 467
BmeRI GACNNNNNGTC 1 cut(s) 1114
BmgT120I GGNCC 1 cut(s) 467
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 2 cut(s) 699, 1112
BmsI GCATC 1 cut(s) 511
Bpu10I CCTNAGC 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 937
Bsa29I ATCGAT 1 cut(s) 915
BsaBI GATNNNNATC 3 cut(s) 747, 796, 1092
BsaHI GRCGYC 1 cut(s) 318
BsaJI CCNNGG 3 cut(s) 116, 137, 787
Bsc4I CCNNNNNNNGG 4 cut(s) 204, 368, 476, 739
Bse1I ACTGG 2 cut(s) 610, 1084
Bse8I GATNNNNATC 3 cut(s) 747, 796, 1092
BseBI CCWGG 2 cut(s) 699, 1112
BseCI ATCGAT 1 cut(s) 915
BseDI CCNNGG 3 cut(s) 116, 137, 787
BseGI GGATG 3 cut(s) 526, 685, 797
BseJI GATNNNNATC 3 cut(s) 747, 796, 1092
BseLI CCNNNNNNNGG 4 cut(s) 204, 368, 476, 739
BseMII CTCAG 2 cut(s) 980, 1013
BseNI ACTGG 2 cut(s) 610, 1084
BseRI GAGGAG 1 cut(s) 587
BseXI GCAGC 6 cut(s) 50, 339, 345, 883, 889, 917
Bsh1236I CGCG 2 cut(s) 103, 323
BshFI GGCC 2 cut(s) 381, 491
BshVI ATCGAT 1 cut(s) 915
BsiHKAI GWGCWC 2 cut(s) 512, 1030
BslI CCNNNNNNNGG 4 cut(s) 204, 368, 476, 739
BsmAI GTCTC 4 cut(s) 552, 841, 916, 1122
BsmBI CGTCTC 1 cut(s) 841
BsnI GGCC 2 cut(s) 381, 491
Bsp1286I GDGCHC 2 cut(s) 512, 1030
Bsp19I CCATGG 2 cut(s) 116, 787
BspACI CCGC 5 cut(s) 220, 321, 350, 356, 899
BspANI GGCC 2 cut(s) 381, 491
BspCNI CTCAG 2 cut(s) 979, 1014
BspDI ATCGAT 1 cut(s) 915
BspFNI CGCG 2 cut(s) 103, 323
BspHI TCATGA 1 cut(s) 451
BspLI GGNNCC 1 cut(s) 135
BspMAI CTGCAG 2 cut(s) 811, 907
BspPI GGATC 5 cut(s) 128, 141, 616, 750, 911
BsrI ACTGG 2 cut(s) 610, 1084
BssECI CCNNGG 3 cut(s) 116, 137, 787
BssNI GRCGYC 1 cut(s) 318
BssT1I CCWWGG 3 cut(s) 116, 137, 787
Bst2UI CCWGG 2 cut(s) 699, 1112
Bst4CI ACNGT 3 cut(s) 199, 252, 634
BstACI GRCGYC 1 cut(s) 318
BstAPI GCANNNNNTGC 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 4 cut(s) 122, 966, 1022, 1050
BstDSI CCRYGG 2 cut(s) 116, 787
BstF5I GGATG 3 cut(s) 526, 685, 797
BstFNI CGCG 2 cut(s) 103, 323
BstMAI GTCTC 4 cut(s) 552, 841, 916, 1122
BstMWI GCNNNNNNNGC 6 cut(s) 51, 192, 226, 358, 902, 905
BstNI CCWGG 2 cut(s) 699, 1112
BstNSI RCATGY 1 cut(s) 940
BstSCI CCNGG 2 cut(s) 697, 1110
BstSFI CTRYAG 2 cut(s) 807, 903
BstUI CGCG 2 cut(s) 103, 323
BstV1I GCAGC 6 cut(s) 50, 339, 345, 883, 889, 917
BstX2I RGATCY 2 cut(s) 133, 811
BstYI RGATCY 2 cut(s) 133, 811
Bsu15I ATCGAT 1 cut(s) 915
BsuRI GGCC 2 cut(s) 381, 491
BsuTUI ATCGAT 1 cut(s) 915
BtgI CCRYGG 2 cut(s) 116, 787
BtsCI GGATG 3 cut(s) 526, 685, 797
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 2 cut(s) 240, 603
Cac8I GCNNGC 1 cut(s) 43
CaiI CAGNNNCTG 1 cut(s) 1021
CciI TCATGA 1 cut(s) 451
Cfr13I GGNCC 1 cut(s) 467
ClaI ATCGAT 1 cut(s) 915
CseI GACGC 2 cut(s) 92, 326
Csp6I GTAC 2 cut(s) 236, 960
CviAII CATG 9 cut(s) 117, 416, 431, 437, 452, 718, 788, 937, 1042
CviQI GTAC 2 cut(s) 236, 960
DdeI CTNAG 4 cut(s) 122, 966, 1022, 1050
DriI GACNNNNNGTC 1 cut(s) 1114
Eam1105I GACNNNNNGTC 1 cut(s) 1114
Eco130I CCWWGG 3 cut(s) 116, 137, 787
Eco47I GGWCC 1 cut(s) 467
EcoO109I RGGNCCY 1 cut(s) 467
EcoRII CCWGG 2 cut(s) 697, 1110
EcoT14I CCWWGG 3 cut(s) 116, 137, 787
EcoT22I ATGCAT 1 cut(s) 942
ErhI CCWWGG 3 cut(s) 116, 137, 787
Esp3I CGTCTC 1 cut(s) 841
FaeI CATG 9 cut(s) 120, 419, 434, 440, 455, 721, 791, 940, 1045
FalI AAGNNNNNCTT 4 cut(s) 258, 290, 946, 978
FatI CATG 9 cut(s) 116, 415, 430, 436, 451, 717, 787, 936, 1041
FauI CCCGC 1 cut(s) 213
FauNDI CATATG 1 cut(s) 942
FbaI TGATCA 2 cut(s) 61, 1087
Fnu4HI GCNGC 9 cut(s) 39, 321, 353, 356, 359, 897, 900, 903, 906
FokI GGATG 3 cut(s) 533, 672, 784
Fsp4HI GCNGC 9 cut(s) 39, 321, 353, 356, 359, 897, 900, 903, 906
FspBI CTAG 3 cut(s) 291, 471, 1125
GluI GCNGC 9 cut(s) 39, 321, 353, 356, 359, 897, 900, 903, 906
HaeIII GGCC 2 cut(s) 381, 491
HgaI GACGC 2 cut(s) 92, 326
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 9 cut(s) 120, 419, 434, 440, 455, 721, 791, 940, 1045
HindIII AAGCTT 1 cut(s) 1052
HinfI GANTC 3 cut(s) 10, 792, 1115
HphI GGTGA 3 cut(s) 235, 380, 984
Hpy188I TCNGA 5 cut(s) 520, 591, 613, 921, 969
Hpy188III TCNNGA 5 cut(s) 156, 212, 266, 452, 1125
Hpy99I CGWCG 1 cut(s) 836
HpyAV CCTTC 7 cut(s) 124, 272, 458, 620, 765, 894, 1131
HpyCH4III ACNGT 3 cut(s) 199, 252, 634
HpyCH4IV ACGT 1 cut(s) 831
HpyCH4V TGCA 6 cut(s) 195, 485, 554, 809, 905, 940
HpyF10VI GCNNNNNNNGC 6 cut(s) 51, 192, 226, 358, 902, 905
HpyF3I CTNAG 4 cut(s) 122, 966, 1022, 1050
HpySE526I ACGT 1 cut(s) 831
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 9 cut(s) 120, 419, 434, 440, 455, 721, 791, 940, 1045
Ksp22I TGATCA 2 cut(s) 61, 1087
LmnI GCTCC 2 cut(s) 20, 507
Lsp1109I GCAGC 6 cut(s) 50, 339, 345, 883, 889, 917
LweI GCATC 1 cut(s) 511
MaeI CTAG 3 cut(s) 291, 471, 1125
MaeII ACGT 1 cut(s) 831
MaeIII GTNAC 1 cut(s) 11
MboII GAAGA 4 cut(s) 590, 593, 635, 1056
MflI RGATCY 2 cut(s) 133, 811
MhlI GDGCHC 2 cut(s) 512, 1030
MlyI GAGTC 2 cut(s) 19, 1124
MnlI CCTC 9 cut(s) 161, 219, 357, 413, 527, 565, 568, 856, 983
Mph1103I ATGCAT 1 cut(s) 942
MseI TTAA 5 cut(s) 6, 282, 665, 828, 947
MslI CAYNNNNRTG 3 cut(s) 435, 456, 941
MspA1I CMGCKG 2 cut(s) 352, 358
MspR9I CCNGG 2 cut(s) 699, 1112
MvaI CCWGG 2 cut(s) 699, 1112
MvnI CGCG 2 cut(s) 103, 323
MwoI GCNNNNNNNGC 6 cut(s) 51, 192, 226, 358, 902, 905
NcoI CCATGG 2 cut(s) 116, 787
NdeI CATATG 1 cut(s) 942
NlaIII CATG 9 cut(s) 120, 419, 434, 440, 455, 721, 791, 940, 1045
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 11
NsiI ATGCAT 1 cut(s) 942
NspI RCATGY 1 cut(s) 940
PagI TCATGA 1 cut(s) 451
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PfeI GAWTC 1 cut(s) 792
PflMI CCANNNNNTGG 1 cut(s) 368
PkrI GCNGC 9 cut(s) 40, 322, 354, 357, 360, 898, 901, 904, 907
PleI GAGTC 2 cut(s) 18, 1123
PpsI GAGTC 2 cut(s) 18, 1123
PpuMI RGGWCCY 1 cut(s) 467
Psp5II RGGWCCY 1 cut(s) 467
Psp6I CCWGG 2 cut(s) 697, 1110
PspGI CCWGG 2 cut(s) 697, 1110
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 1 cut(s) 467
PspPPI RGGWCCY 1 cut(s) 467
PstI CTGCAG 2 cut(s) 811, 907
PstNI CAGNNNCTG 1 cut(s) 1021
PsuI RGATCY 2 cut(s) 133, 811
RsaI GTAC 2 cut(s) 237, 961
RsaNI GTAC 2 cut(s) 236, 960
RseI CAYNNNNRTG 3 cut(s) 435, 456, 941
SaqAI TTAA 5 cut(s) 6, 282, 665, 828, 947
SatI GCNGC 9 cut(s) 39, 321, 353, 356, 359, 897, 900, 903, 906
Sau96I GGNCC 1 cut(s) 467
ScaI AGTACT 1 cut(s) 961
SchI GAGTC 2 cut(s) 19, 1124
ScrFI CCNGG 2 cut(s) 699, 1112
SduI GDGCHC 2 cut(s) 512, 1030
SfaNI GCATC 1 cut(s) 511
SfcI CTRYAG 2 cut(s) 807, 903
SinI GGWCC 1 cut(s) 467
SmiMI CAYNNNNRTG 3 cut(s) 435, 456, 941
SmlI CTYRAG 1 cut(s) 952
SmoI CTYRAG 1 cut(s) 952
SsiI CCGC 5 cut(s) 220, 321, 350, 356, 899
SspMI CTAG 3 cut(s) 291, 471, 1125
StyD4I CCNGG 2 cut(s) 697, 1110
StyI CCWWGG 3 cut(s) 116, 137, 787
TaaI ACNGT 3 cut(s) 199, 252, 634
TaiI ACGT 1 cut(s) 834
TaqI TCGA 4 cut(s) 110, 211, 303, 915
TatI WGTACW 1 cut(s) 959
TauI GCSGC 3 cut(s) 323, 358, 902
TfiI GAWTC 1 cut(s) 792
Tru1I TTAA 5 cut(s) 6, 282, 665, 828, 947
Tru9I TTAA 5 cut(s) 6, 282, 665, 828, 947
TscAI CASTG 2 cut(s) 247, 610
TseFI GTSAC 1 cut(s) 11
TseI GCWGC 6 cut(s) 38, 352, 358, 896, 902, 905
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 4 cut(s) 354, 399, 636, 814
TspRI CASTG 2 cut(s) 247, 610
Van91I CCANNNNNTGG 1 cut(s) 368
VpaK11BI GGWCC 1 cut(s) 467
XapI RAATTY 5 cut(s) 74, 373, 514, 760, 982
XbaI TCTAGA 1 cut(s) 1124
XceI RCATGY 1 cut(s) 940
XcmI CCANNNNNNNNNTGG 1 cut(s) 114
XspI CTAG 3 cut(s) 291, 471, 1125
ZrmI AGTACT 1 cut(s) 961
Zsp2I ATGCAT 1 cut(s) 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.