Rroxscaffold_2G00085680
TCP Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0009855
Physical Location & Seq
Forward (+)
7960611 .. 7962937
2327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00085680.1

Sequence Viewer

Length: 675 bp
ATGAATCATCAGTCACTCCTGAATATCACTCCATCATCTCTTGATCAAAACATTGGAGATCAAGGGTTTAGAAGCAATATTTGGAGATCAACAAATGATGACGAAAAAGATCAAGAAAATGATAAAGATGTGGAAGAATCAGATGAAGATGATCATCGAAAGCAAGGAGGGAATGTTGTCGACCATGGTTCATCATCATCAAACAACTTCTTGATGACCCGAAGTAGTGCTACTACCAATCATCCATTGTTCTTTCCAGGTCTTCTGAACAATAGTAATGCCATGCCTAATTACGGTTTTCACAATTGGGATCACAATCAGTCTTCAAATTTTCCCCTGTCTCATCAATTAGGAAGCCATGGATTCACATCTCAACATACAGATCCCCACAATTTTAATGTGGCGTCCTTGCCTTCCACATTGTCTTTATCTACTGGAACAACACAAGCTTATTTTCCTTCGCATGCTACCACGGATGCAGCGGATCATCAGATCGATATTCCGAGACAGTTCAACCACCATATGCAAAATCCTCATCAAAACCTCTTGGCCAATTCTGTATACCCTAGTAGCCAGTCTATGCAGAGAGGAACGCCCCAAAATTTGATGAGTATGATTACAAAGCTTGCCCATTCTTCTCAGCCAAATAAAGACCAGGAGCCTCCTTCTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

224

Amino Acids

25.01

Weight (kDa)

5.71

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 180, 561
AciI CCGC 1 cut(s) 482
AclWI GGATC 3 cut(s) 318, 377, 492
AcoI YGGCCR 1 cut(s) 549
AcsI RAATTY 2 cut(s) 328, 601
AcyI GRCGYC 1 cut(s) 404
AfiI CCNNNNNNNGG 1 cut(s) 293
AgsI TTSAA 2 cut(s) 327, 514
AjnI CCWGG 2 cut(s) 256, 654
AjuI GAANNNNNNNTTGG 2 cut(s) 64, 96
AluBI AGCT 2 cut(s) 449, 625
AluI AGCT 2 cut(s) 449, 625
Alw26I GTCTC 2 cut(s) 345, 499
AlwI GGATC 3 cut(s) 318, 377, 492
AoxI GGCC 1 cut(s) 549
ApeKI GCWGC 1 cut(s) 479
ApoI RAATTY 2 cut(s) 328, 601
BalI TGGCCA 1 cut(s) 551
BarI GAAGNNNNNNTAC 2 cut(s) 214, 246
BbsI GAAGAC 2 cut(s) 254, 315
BbvI GCAGC 1 cut(s) 491
BccI CCATC 1 cut(s) 40
BciT130I CCWGG 2 cut(s) 258, 656
BclI TGATCA 2 cut(s) 43, 151
BcoDI GTCTC 2 cut(s) 345, 499
BfaI CTAG 2 cut(s) 567, 669
BisI GCNGC 1 cut(s) 480
BlsI GCNGC 1 cut(s) 481
Bme1390I CCNGG 2 cut(s) 258, 656
BmiI GGNNCC 1 cut(s) 660
BmrFI CCNGG 2 cut(s) 258, 656
BmsI GCATC 1 cut(s) 466
BpiI GAAGAC 2 cut(s) 254, 315
Bsa29I ATCGAT 1 cut(s) 495
BsaBI GATNNNNATC 3 cut(s) 153, 315, 367
BsaHI GRCGYC 1 cut(s) 404
BsaJI CCNNGG 3 cut(s) 184, 358, 471
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse1I ACTGG 2 cut(s) 439, 574
Bse8I GATNNNNATC 3 cut(s) 153, 315, 367
BseBI CCWGG 2 cut(s) 258, 656
BseCI ATCGAT 1 cut(s) 495
BseDI CCNNGG 3 cut(s) 184, 358, 471
BseGI GGATG 2 cut(s) 241, 481
BseJI GATNNNNATC 3 cut(s) 153, 315, 367
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMII CTCAG 1 cut(s) 653
BseNI ACTGG 2 cut(s) 439, 574
BseXI GCAGC 1 cut(s) 491
BshFI GGCC 1 cut(s) 551
BshVI ATCGAT 1 cut(s) 495
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 2 cut(s) 345, 499
BsnI GGCC 1 cut(s) 551
Bsp143I GATC 9 cut(s) 43, 58, 86, 109, 151, 310, 382, 484, 492
Bsp19I CCATGG 2 cut(s) 184, 358
BspACI CCGC 1 cut(s) 482
BspANI GGCC 1 cut(s) 551
BspCNI CTCAG 1 cut(s) 652
BspDI ATCGAT 1 cut(s) 495
BspLI GGNNCC 1 cut(s) 660
BspPI GGATC 3 cut(s) 318, 377, 492
BsrI ACTGG 2 cut(s) 439, 574
BssECI CCNNGG 3 cut(s) 184, 358, 471
BssMI GATC 9 cut(s) 43, 58, 86, 109, 151, 310, 382, 484, 492
BssNAI GTATAC 1 cut(s) 562
BssNI GRCGYC 1 cut(s) 404
BssT1I CCWWGG 2 cut(s) 184, 358
Bst1107I GTATAC 1 cut(s) 562
Bst2UI CCWGG 2 cut(s) 258, 656
Bst4CI ACNGT 2 cut(s) 296, 510
BstACI GRCGYC 1 cut(s) 404
BstC8I GCNNGC 2 cut(s) 465, 627
BstDEI CTNAG 1 cut(s) 639
BstDSI CCRYGG 3 cut(s) 184, 358, 471
BstF5I GGATG 2 cut(s) 241, 481
BstKTI GATC 9 cut(s) 46, 61, 89, 112, 154, 313, 385, 487, 495
BstMAI GTCTC 2 cut(s) 345, 499
BstMBI GATC 9 cut(s) 43, 58, 86, 109, 151, 310, 382, 484, 492
BstNI CCWGG 2 cut(s) 258, 656
BstNSI RCATGY 1 cut(s) 467
BstSCI CCNGG 2 cut(s) 256, 654
BstV1I GCAGC 1 cut(s) 491
BstV2I GAAGAC 2 cut(s) 254, 315
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BstZ17I GTATAC 1 cut(s) 562
Bsu15I ATCGAT 1 cut(s) 495
BsuRI GGCC 1 cut(s) 551
BsuTUI ATCGAT 1 cut(s) 495
BtgI CCRYGG 3 cut(s) 184, 358, 471
BtsCI GGATG 2 cut(s) 241, 481
Cac8I GCNNGC 2 cut(s) 465, 627
ClaI ATCGAT 1 cut(s) 495
CseI GACGC 1 cut(s) 393
CviAII CATG 4 cut(s) 185, 283, 359, 464
CviJI RGCY 7 cut(s) 357, 449, 551, 573, 625, 643, 661
CviKI_1 RGCY 7 cut(s) 357, 449, 551, 573, 625, 643, 661
DdeI CTNAG 1 cut(s) 639
DpnI GATC 9 cut(s) 45, 60, 88, 111, 153, 312, 384, 486, 494
DpnII GATC 9 cut(s) 43, 58, 86, 109, 151, 310, 382, 484, 492
EaeI YGGCCR 1 cut(s) 549
Eco130I CCWWGG 2 cut(s) 184, 358
EcoRII CCWGG 2 cut(s) 256, 654
EcoT14I CCWWGG 2 cut(s) 184, 358
ErhI CCWWGG 2 cut(s) 184, 358
FaeI CATG 4 cut(s) 188, 286, 362, 467
FatI CATG 4 cut(s) 184, 282, 358, 463
FauNDI CATATG 1 cut(s) 522
FbaI TGATCA 2 cut(s) 43, 151
FblI GTMKAC 2 cut(s) 180, 561
Fnu4HI GCNGC 1 cut(s) 480
FokI GGATG 2 cut(s) 228, 488
Fsp4HI GCNGC 1 cut(s) 480
FspBI CTAG 2 cut(s) 567, 669
GluI GCNGC 1 cut(s) 480
HaeIII GGCC 1 cut(s) 551
HgaI GACGC 1 cut(s) 393
Hin1I GRCGYC 1 cut(s) 404
Hin1II CATG 4 cut(s) 188, 286, 362, 467
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HindIII AAGCTT 2 cut(s) 447, 623
HinfI GANTC 3 cut(s) 4, 137, 363
Hpy166II GTNNAC 2 cut(s) 181, 562
Hpy188I TCNGA 4 cut(s) 142, 267, 492, 504
Hpy188III TCNNGA 5 cut(s) 19, 41, 113, 211, 669
Hpy8I GTNNAC 2 cut(s) 181, 562
HpyAV CCTTC 3 cut(s) 423, 468, 675
HpyCH4III ACNGT 2 cut(s) 296, 510
HpyCH4V TGCA 3 cut(s) 479, 526, 583
HpyF3I CTNAG 1 cut(s) 639
Hsp92I GRCGYC 1 cut(s) 404
Hsp92II CATG 4 cut(s) 188, 286, 362, 467
Ksp22I TGATCA 2 cut(s) 43, 151
Kzo9I GATC 9 cut(s) 43, 58, 86, 109, 151, 310, 382, 484, 492
LmnI GCTCC 1 cut(s) 658
LpnPI CCDG 8 cut(s) 32, 243, 270, 350, 420, 587, 641, 668
Lsp1109I GCAGC 1 cut(s) 491
LweI GCATC 1 cut(s) 466
MaeI CTAG 2 cut(s) 567, 669
MaeIII GTNAC 1 cut(s) 12
MalI GATC 9 cut(s) 45, 60, 88, 111, 153, 312, 384, 486, 494
MboI GATC 9 cut(s) 43, 58, 86, 109, 151, 310, 382, 484, 492
MboII GAAGA 5 cut(s) 146, 158, 254, 315, 627
MfeI CAATTG 1 cut(s) 304
MflI RGATCY 1 cut(s) 382
MlsI TGGCCA 1 cut(s) 551
MluCI AATT 7 cut(s) 289, 304, 328, 347, 391, 553, 601
MluNI TGGCCA 1 cut(s) 551
MnlI CCTC 5 cut(s) 161, 543, 554, 581, 672
Mox20I TGGCCA 1 cut(s) 551
MscI TGGCCA 1 cut(s) 551
MseI TTAA 1 cut(s) 396
Msp20I TGGCCA 1 cut(s) 551
MspA1I CMGCKG 1 cut(s) 482
MspR9I CCNGG 2 cut(s) 258, 656
MunI CAATTG 1 cut(s) 304
MvaI CCWGG 2 cut(s) 258, 656
NcoI CCATGG 2 cut(s) 184, 358
NdeI CATATG 1 cut(s) 522
NdeII GATC 9 cut(s) 43, 58, 86, 109, 151, 310, 382, 484, 492
NlaIII CATG 4 cut(s) 188, 286, 362, 467
NlaIV GGNNCC 1 cut(s) 660
NmuCI GTSAC 1 cut(s) 12
NspI RCATGY 1 cut(s) 467
PaeI GCATGC 1 cut(s) 467
PfeI GAWTC 3 cut(s) 4, 137, 363
PkrI GCNGC 1 cut(s) 481
Psp6I CCWGG 2 cut(s) 256, 654
PspGI CCWGG 2 cut(s) 256, 654
PspN4I GGNNCC 1 cut(s) 660
PsuI RGATCY 1 cut(s) 382
SalI GTCGAC 1 cut(s) 179
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 1 cut(s) 480
Sau3AI GATC 9 cut(s) 43, 58, 86, 109, 151, 310, 382, 484, 492
ScrFI CCNGG 2 cut(s) 258, 656
SetI ASST 4 cut(s) 262, 451, 546, 627
SfaNI GCATC 1 cut(s) 466
SphI GCATGC 1 cut(s) 467
Sse9I AATT 7 cut(s) 289, 304, 328, 347, 391, 553, 601
SsiI CCGC 1 cut(s) 482
SspI AATATT 1 cut(s) 79
SspMI CTAG 2 cut(s) 567, 669
StyD4I CCNGG 2 cut(s) 256, 654
StyI CCWWGG 2 cut(s) 184, 358
TaaI ACNGT 2 cut(s) 296, 510
TaqI TCGA 3 cut(s) 157, 180, 495
TasI AATT 7 cut(s) 289, 304, 328, 347, 391, 553, 601
TfiI GAWTC 3 cut(s) 4, 137, 363
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TseFI GTSAC 1 cut(s) 12
TseI GCWGC 1 cut(s) 479
Tsp45I GTSAC 1 cut(s) 12
TspDTI ATGAA 3 cut(s) 17, 159, 180
TspGWI ACGGA 1 cut(s) 488
XapI RAATTY 2 cut(s) 328, 601
XbaI TCTAGA 1 cut(s) 668
XceI RCATGY 1 cut(s) 467
XmiI GTMKAC 2 cut(s) 180, 561
XspI CTAG 2 cut(s) 567, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.