pycom17g06080
TCP Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0009855
Physical Location & Seq
Forward (+)
4297516 .. 4298298
783 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g06080.1

Sequence Viewer

Length: 783 bp
ATGCCACCACCTGGGAGTTTTGGTCTAAATCATCCATCATTAGGGCTGACTTCATCTCATGGTGACCAAACCAATGCTCATGCCCAGTTATCTCATAATCATAGTGGAGAAGGCCCTAGCAGTGGAATAGATAGATCAAATTTTTGGCCTACTGGTTCGGATGCTCTTTGGCGAGCAAAGTCAAAAGAAATTGTAAGAGACACAAGAAATGAGGACGAGGGAAATCAGAAAGATAATCTTGGAATATCAGATGATCAAGAACAAGCAGGCAATAATGTTGATGGTAATTCATCAAACACATTCTTAAGAAGTAATACCAACCCTCCATTCTTTCCAGGTCTTCTGAATAATTCTACGAATATGCCTTATGCTTATCATAATTGGGATCATTCTCATCAGACTTCAAATTTTCCACTATCTCAATTAGGAAGCCATGGATTCCAATCCCAAACTACAGATCTCCACAATTTCCCTAATGTCCTCTCGTTGCCATCCACATTGTCTTTATCAACGACACGATCTTATTTTCCTTCGCATAACATGGCGGTTACAGGAGAGATGGATCCAAGACAATTCAACCACTTGCAAATGCTAAACTCTACTAGTAGTACTAGAACTTCACAAAACCTATTGCCCAATTTTCTTTCTACACCAGCTCTAGACCCTAGTAGCCAAACTCTGAGAGCACCCCATTTGAGTATGGTGACTAAGCTTGTGCATTCTTCAGACAACACTGGCAGTGGTCATCACCCAAATAACAATCAGGAGCCTCCGTCTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

261

Amino Acids

28.44

Weight (kDa)

6.11

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 11
AciI CCGC 1 cut(s) 545
AclWI GGATC 3 cut(s) 393, 557, 570
AcsI RAATTY 2 cut(s) 139, 406
AcuI CTGAAG 1 cut(s) 708
AfaI GTAC 1 cut(s) 610
AfiI CCNNNNNNNGG 3 cut(s) 11, 41, 122
AflII CTTAAG 1 cut(s) 304
AgsI TTSAA 2 cut(s) 405, 577
AhlI ACTAGT 1 cut(s) 602
AjnI CCWGG 2 cut(s) 10, 334
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AluBI AGCT 2 cut(s) 656, 712
AluI AGCT 2 cut(s) 656, 712
Alw21I GWGCWC 1 cut(s) 688
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 3 cut(s) 393, 557, 570
AoxI GGCC 2 cut(s) 112, 146
ApoI RAATTY 2 cut(s) 139, 406
AspS9I GGNCC 1 cut(s) 113
AsuHPI GGTGA 3 cut(s) 74, 715, 740
BamHI GGATCC 1 cut(s) 562
BarI GAAGNNNNNNTAC 2 cut(s) 601, 633
BbsI GAAGAC 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 688
BccI CCATC 4 cut(s) 43, 275, 499, 553
BciT130I CCWGG 2 cut(s) 12, 336
BclI TGATCA 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 192
BcuI ACTAGT 1 cut(s) 602
BfaI CTAG 5 cut(s) 117, 603, 612, 659, 666
BfmI CTRYAG 1 cut(s) 453
BfrI CTTAAG 1 cut(s) 304
BglII AGATCT 1 cut(s) 457
BmcAI AGTACT 1 cut(s) 610
Bme1390I CCNGG 2 cut(s) 12, 336
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 2 cut(s) 564, 768
BmrFI CCNGG 2 cut(s) 12, 336
BmrI ACTGGG 1 cut(s) 79
BmsI GCATC 1 cut(s) 151
BmuI ACTGGG 1 cut(s) 79
BpiI GAAGAC 1 cut(s) 332
BsaBI GATNNNNATC 1 cut(s) 442
BsaJI CCNNGG 2 cut(s) 11, 433
BsaXI ACNNNNNCTCC 5 cut(s) 7, 37, 307, 337, 758
Bsc4I CCNNNNNNNGG 3 cut(s) 11, 41, 122
Bse1I ACTGG 3 cut(s) 85, 157, 739
Bse8I GATNNNNATC 1 cut(s) 442
BseBI CCWGG 2 cut(s) 12, 336
BseDI CCNNGG 2 cut(s) 11, 433
BseGI GGATG 3 cut(s) 31, 166, 491
BseJI GATNNNNATC 1 cut(s) 442
BseLI CCNNNNNNNGG 3 cut(s) 11, 41, 122
BseMII CTCAG 1 cut(s) 671
BseNI ACTGG 3 cut(s) 85, 157, 739
BshFI GGCC 2 cut(s) 114, 148
BsiHKAI GWGCWC 1 cut(s) 688
BslI CCNNNNNNNGG 3 cut(s) 11, 41, 122
BsmAI GTCTC 1 cut(s) 192
BsmI GAATGC 1 cut(s) 718
BsnI GGCC 2 cut(s) 114, 148
Bsp1286I GDGCHC 1 cut(s) 688
Bsp143I GATC 6 cut(s) 134, 253, 385, 457, 518, 562
Bsp19I CCATGG 1 cut(s) 433
BspACI CCGC 1 cut(s) 545
BspANI GGCC 2 cut(s) 114, 148
BspCNI CTCAG 1 cut(s) 672
BspLI GGNNCC 2 cut(s) 564, 768
BspPI GGATC 3 cut(s) 393, 557, 570
BspTI CTTAAG 1 cut(s) 304
BsrI ACTGG 3 cut(s) 85, 157, 739
BssECI CCNNGG 2 cut(s) 11, 433
BssMI GATC 6 cut(s) 134, 253, 385, 457, 518, 562
BssT1I CCWWGG 1 cut(s) 433
Bst2UI CCWGG 2 cut(s) 12, 336
BstAFI CTTAAG 1 cut(s) 304
BstC8I GCNNGC 2 cut(s) 174, 268
BstDEI CTNAG 2 cut(s) 680, 708
BstDSI CCRYGG 1 cut(s) 433
BstEII GGTNACC 1 cut(s) 62
BstF5I GGATG 3 cut(s) 31, 166, 491
BstKTI GATC 6 cut(s) 137, 256, 388, 460, 521, 565
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 6 cut(s) 134, 253, 385, 457, 518, 562
BstNI CCWGG 2 cut(s) 12, 336
BstPI GGTNACC 1 cut(s) 62
BstSCI CCNGG 2 cut(s) 10, 334
BstSFI CTRYAG 1 cut(s) 453
BstV2I GAAGAC 1 cut(s) 332
BstX2I RGATCY 2 cut(s) 457, 562
BstYI RGATCY 2 cut(s) 457, 562
BsuRI GGCC 2 cut(s) 114, 148
BtgI CCRYGG 1 cut(s) 433
BtsCI GGATG 3 cut(s) 31, 166, 491
BtsI GCAGTG 2 cut(s) 127, 745
BtsIMutI CAGTG 3 cut(s) 127, 732, 745
Cac8I GCNNGC 2 cut(s) 174, 268
Cfr13I GGNCC 1 cut(s) 113
Csp6I GTAC 1 cut(s) 609
CviAII CATG 4 cut(s) 59, 80, 434, 541
CviJI RGCY 8 cut(s) 46, 114, 148, 432, 656, 672, 712, 769
CviKI_1 RGCY 8 cut(s) 46, 114, 148, 432, 656, 672, 712, 769
CviQI GTAC 1 cut(s) 609
DdeI CTNAG 2 cut(s) 680, 708
DpnI GATC 6 cut(s) 136, 255, 387, 459, 520, 564
DpnII GATC 6 cut(s) 134, 253, 385, 457, 518, 562
Eco130I CCWWGG 1 cut(s) 433
Eco57I CTGAAG 1 cut(s) 708
Eco91I GGTNACC 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 113
EcoO65I GGTNACC 1 cut(s) 62
EcoRII CCWGG 2 cut(s) 10, 334
EcoT14I CCWWGG 1 cut(s) 433
ErhI CCWWGG 1 cut(s) 433
FaeI CATG 4 cut(s) 62, 83, 437, 544
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FatI CATG 4 cut(s) 58, 79, 433, 540
FbaI TGATCA 1 cut(s) 253
FokI GGATG 3 cut(s) 18, 173, 478
FspBI CTAG 5 cut(s) 117, 603, 612, 659, 666
HaeIII GGCC 2 cut(s) 114, 148
Hin1II CATG 4 cut(s) 62, 83, 437, 544
HindIII AAGCTT 1 cut(s) 710
HinfI GANTC 1 cut(s) 438
HphI GGTGA 3 cut(s) 74, 715, 740
Hpy188I TCNGA 7 cut(s) 160, 228, 250, 345, 399, 681, 727
Hpy188III TCNNGA 4 cut(s) 257, 659, 764, 777
HpyAV CCTTC 2 cut(s) 104, 540
HpyCH4V TGCA 2 cut(s) 586, 718
HpyF3I CTNAG 2 cut(s) 680, 708
Hsp92II CATG 4 cut(s) 62, 83, 437, 544
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 6 cut(s) 134, 253, 385, 457, 518, 562
LmnI GCTCC 1 cut(s) 766
LweI GCATC 1 cut(s) 151
MaeI CTAG 5 cut(s) 117, 603, 612, 659, 666
MaeIII GTNAC 3 cut(s) 62, 547, 703
MalI GATC 6 cut(s) 136, 255, 387, 459, 520, 564
MboI GATC 6 cut(s) 134, 253, 385, 457, 518, 562
MboII GAAGA 2 cut(s) 332, 714
MflI RGATCY 2 cut(s) 457, 562
MhlI GDGCHC 1 cut(s) 688
MnlI CCTC 5 cut(s) 205, 211, 333, 491, 780
MseI TTAA 1 cut(s) 305
MspCI CTTAAG 1 cut(s) 304
MspR9I CCNGG 2 cut(s) 12, 336
Mva1269I GAATGC 1 cut(s) 718
MvaI CCWGG 2 cut(s) 12, 336
NcoI CCATGG 1 cut(s) 433
NdeII GATC 6 cut(s) 134, 253, 385, 457, 518, 562
NlaIII CATG 4 cut(s) 62, 83, 437, 544
NlaIV GGNNCC 2 cut(s) 564, 768
NmuCI GTSAC 2 cut(s) 62, 703
PctI GAATGC 1 cut(s) 718
PfeI GAWTC 1 cut(s) 438
PflMI CCANNNNNTGG 1 cut(s) 11
Psp6I CCWGG 2 cut(s) 10, 334
PspEI GGTNACC 1 cut(s) 62
PspGI CCWGG 2 cut(s) 10, 334
PspN4I GGNNCC 2 cut(s) 564, 768
PspPI GGNCC 1 cut(s) 113
PsuI RGATCY 2 cut(s) 457, 562
RsaI GTAC 1 cut(s) 610
RsaNI GTAC 1 cut(s) 609
SaqAI TTAA 1 cut(s) 305
Sau3AI GATC 6 cut(s) 134, 253, 385, 457, 518, 562
Sau96I GGNCC 1 cut(s) 113
ScaI AGTACT 1 cut(s) 610
ScrFI CCNGG 2 cut(s) 12, 336
SduI GDGCHC 1 cut(s) 688
SetI ASST 5 cut(s) 13, 340, 630, 658, 714
SfaNI GCATC 1 cut(s) 151
SfcI CTRYAG 1 cut(s) 453
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
SpeI ACTAGT 1 cut(s) 602
SsiI CCGC 1 cut(s) 545
SspMI CTAG 5 cut(s) 117, 603, 612, 659, 666
StyD4I CCNGG 2 cut(s) 10, 334
StyI CCWWGG 1 cut(s) 433
TaqI TCGA 1 cut(s) 778
TatI WGTACW 1 cut(s) 608
TfiI GAWTC 1 cut(s) 438
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TscAI CASTG 3 cut(s) 127, 739, 745
TseFI GTSAC 2 cut(s) 62, 703
Tsp45I GTSAC 2 cut(s) 62, 703
TspDTI ATGAA 2 cut(s) 42, 279
TspGWI ACGGA 1 cut(s) 762
TspRI CASTG 3 cut(s) 127, 739, 745
Van91I CCANNNNNTGG 1 cut(s) 11
Vha464I CTTAAG 1 cut(s) 304
XapI RAATTY 2 cut(s) 139, 406
XbaI TCTAGA 1 cut(s) 658
XspI CTAG 5 cut(s) 117, 603, 612, 659, 666
ZrmI AGTACT 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.