MD17G1061100.v1.1
TCP Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0009855
Physical Location & Seq
Forward (+)
4956811 .. 4958997
2187 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1061100.v1.1.491

Sequence Viewer

Length: 1143 bp
ATGATTAAGAGTCCCATTACTGAAGCAGATTTGCAAGAAGCAGGAGCTGGCAGTTCAAGTCGTGATGACGAAGCCAATAAAGTTTCATCAAACCCTAATTTATCTCGTCCATCAACTCCATGGCTAAGGTTGAAGGACCCAAGGATTGTGCGTGTGTCCCGAGCTTTTGGAGGGAAGGACAGGCATAGCAAGGTTTGCACCATAAGAGGACTTCGAGATCGGCGGGTGAGGCTATCGGTACCTACTGCAATCCAATTGTATGATCTTCAAGAAAGGCTTGGTCTTAACCAGCCTAGCAAGGTTGTCGATTGGTTGCTTGATGCCGCAAAGCATGAAATCGATGAACTTCCTCCGCTGCCAATGCCATCACTTGGGAGTTTTGGTCTAAATCATCCATCATTAGGGCTCACTTCATCTCATGGTGACCAAACCAATGCTCATGCTCAGTTATCTCATAATCATAGTGGAGAAGGCCCTAGCAGTGGAATAGATAGATCAAATTTTTGGCCTACTGATTCGGATGCTCTTTGGCGAGCAAAGTCGAAAGAAATTGTAAGAGCCACAAGAAATGAGGAGGAGGGAAATCAGAAAGATAATCTTGGAATATCAGATGATCAAGAACAAGCAGGCAATAATGTTGATGGTAATTCATCAAACACGTTCTTGAGAAGTAATACCAACCCTCCATTCTTTCCAGGTCTTCTGAATAGTTCTACGAATATGCCTTATGCTTATCATAATTGGGATCATTCTCATCAGACTTCAAATTTTCCACTATCTCAATTAGGAAGCCATGGATTCCAATCCCAAACTACAGATCTCCACAATTTCCTTAATGTACTCTCGTTGCCATCCACATTGTCTTTATCAACGACACAATCTTATTTTTCTTCGCATAACACAGCGGCTACAGGAGAGCTGGATCCAAGACAATTCAACCACTTGCAAATGCTAAACTCTAGTGGTAGTACTAGTACTTCACAAAACCTATTGCCCAATTTTCTTTCTACACCAGCTCTATACCCTAGTAGCCAAACTCTGAGAGCACCCCATTTGAGTATGGTGACTAAGCTTGTGCATTCTTCAGACAACAATGGCAGTGGTCATCACCCAAATAAAAATCAGGAGCCTCCGTCTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

381

Amino Acids

41.72

Weight (kDa)

6.65

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 58 - 176 1.6e-26 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 238
AccB1I GGYRCC 1 cut(s) 238
AccB7I CCANNNNNTGG 1 cut(s) 371
AciI CCGC 4 cut(s) 223, 324, 353, 905
AclWI GGATC 3 cut(s) 753, 917, 930
AcsI RAATTY 2 cut(s) 499, 766
AcuI CTGAAG 2 cut(s) 42, 1068
AfaI GTAC 4 cut(s) 240, 840, 970, 976
AfiI CCNNNNNNNGG 3 cut(s) 371, 401, 482
AflIII ACRYGT 1 cut(s) 657
AgsI TTSAA 5 cut(s) 57, 133, 269, 765, 937
AhlI ACTAGT 1 cut(s) 971
AjnI CCWGG 1 cut(s) 694
AjuI GAANNNNNNNTTGG 2 cut(s) 671, 703
AluBI AGCT 5 cut(s) 47, 164, 919, 1016, 1072
AluI AGCT 5 cut(s) 47, 164, 919, 1016, 1072
Alw21I GWGCWC 1 cut(s) 1048
AlwI GGATC 3 cut(s) 753, 917, 930
AlwNI CAGNNNCTG 1 cut(s) 47
Ama87I CYCGRG 1 cut(s) 159
AoxI GGCC 2 cut(s) 472, 506
ApeKI GCWGC 1 cut(s) 355
ApoI RAATTY 2 cut(s) 499, 766
Asp718I GGTACC 1 cut(s) 238
AspS9I GGNCC 2 cut(s) 136, 473
AsuHPI GGTGA 4 cut(s) 238, 434, 1075, 1100
AvaI CYCGRG 1 cut(s) 159
AvaII GGWCC 1 cut(s) 136
BamHI GGATCC 1 cut(s) 922
BanI GGYRCC 1 cut(s) 238
BanII GRGCYC 1 cut(s) 408
BarI GAAGNNNNNNTAC 2 cut(s) 961, 993
BbsI GAAGAC 1 cut(s) 692
Bbv12I GWGCWC 1 cut(s) 1048
BbvI GCAGC 1 cut(s) 342
BccI CCATC 5 cut(s) 118, 373, 403, 635, 859
BcgI CGANNNNNNTGC 2 cut(s) 286, 320
BciT130I CCWGG 1 cut(s) 696
BclI TGATCA 1 cut(s) 613
BcuI ACTAGT 1 cut(s) 971
BfaI CTAG 5 cut(s) 294, 477, 960, 972, 1026
BfmI CTRYAG 2 cut(s) 813, 909
BglII AGATCT 1 cut(s) 817
BisI GCNGC 3 cut(s) 324, 356, 906
BlsI GCNGC 3 cut(s) 325, 357, 907
BmcAI AGTACT 2 cut(s) 970, 976
Bme1390I CCNGG 1 cut(s) 696
Bme18I GGWCC 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 159
BmgT120I GGNCC 2 cut(s) 136, 473
BmiI GGNNCC 4 cut(s) 138, 240, 924, 1128
BmrFI CCNGG 1 cut(s) 696
BmsI GCATC 2 cut(s) 310, 511
BpiI GAAGAC 1 cut(s) 692
Bpu10I CCTNAGC 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 685
Bsa29I ATCGAT 1 cut(s) 339
BsaBI GATNNNNATC 1 cut(s) 802
BsaJI CCNNGG 3 cut(s) 119, 140, 793
BsaXI ACNNNNNCTCC 5 cut(s) 367, 397, 667, 697, 1118
Bsc4I CCNNNNNNNGG 3 cut(s) 371, 401, 482
Bse8I GATNNNNATC 1 cut(s) 802
BseBI CCWGG 1 cut(s) 696
BseCI ATCGAT 1 cut(s) 339
BseDI CCNNGG 3 cut(s) 119, 140, 793
BseGI GGATG 3 cut(s) 391, 526, 851
BseJI GATNNNNATC 1 cut(s) 802
BseLI CCNNNNNNNGG 3 cut(s) 371, 401, 482
BseMII CTCAG 2 cut(s) 458, 1031
BseRI GAGGAG 2 cut(s) 587, 590
BseXI GCAGC 1 cut(s) 342
BshFI GGCC 2 cut(s) 474, 508
BshNI GGYRCC 1 cut(s) 238
BshVI ATCGAT 1 cut(s) 339
BsiHKAI GWGCWC 1 cut(s) 1048
BsiHKCI CYCGRG 1 cut(s) 159
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 3 cut(s) 371, 401, 482
BsmFI GGGAC 1 cut(s) 142
BsmI GAATGC 1 cut(s) 1078
BsnI GGCC 2 cut(s) 474, 508
BsoBI CYCGRG 1 cut(s) 159
Bsp1286I GDGCHC 2 cut(s) 408, 1048
Bsp143I GATC 7 cut(s) 217, 262, 494, 613, 745, 817, 922
Bsp19I CCATGG 2 cut(s) 119, 793
BspACI CCGC 4 cut(s) 223, 324, 353, 905
BspANI GGCC 2 cut(s) 474, 508
BspCNI CTCAG 2 cut(s) 457, 1032
BspDI ATCGAT 1 cut(s) 339
BspLI GGNNCC 4 cut(s) 138, 240, 924, 1128
BspPI GGATC 3 cut(s) 753, 917, 930
BspT107I GGYRCC 1 cut(s) 238
BssECI CCNNGG 3 cut(s) 119, 140, 793
BssMI GATC 7 cut(s) 217, 262, 494, 613, 745, 817, 922
BssT1I CCWWGG 3 cut(s) 119, 140, 793
Bst2UI CCWGG 1 cut(s) 696
BstAPI GCANNNNNTGC 1 cut(s) 195
BstC8I GCNNGC 3 cut(s) 49, 534, 628
BstDEI CTNAG 4 cut(s) 125, 444, 1040, 1068
BstDSI CCRYGG 2 cut(s) 119, 793
BstEII GGTNACC 1 cut(s) 422
BstF5I GGATG 3 cut(s) 391, 526, 851
BstKTI GATC 7 cut(s) 220, 265, 497, 616, 748, 820, 925
BstMBI GATC 7 cut(s) 217, 262, 494, 613, 745, 817, 922
BstMWI GCNNNNNNNGC 3 cut(s) 195, 229, 361
BstNI CCWGG 1 cut(s) 696
BstPI GGTNACC 1 cut(s) 422
BstSCI CCNGG 1 cut(s) 694
BstSFI CTRYAG 2 cut(s) 813, 909
BstV1I GCAGC 1 cut(s) 342
BstV2I GAAGAC 1 cut(s) 692
BstX2I RGATCY 2 cut(s) 817, 922
BstYI RGATCY 2 cut(s) 817, 922
Bsu15I ATCGAT 1 cut(s) 339
BsuRI GGCC 2 cut(s) 474, 508
BsuTUI ATCGAT 1 cut(s) 339
BtgI CCRYGG 2 cut(s) 119, 793
BtsCI GGATG 3 cut(s) 391, 526, 851
BtsI GCAGTG 2 cut(s) 487, 1105
BtsIMutI CAGTG 2 cut(s) 487, 1105
Cac8I GCNNGC 3 cut(s) 49, 534, 628
CaiI CAGNNNCTG 1 cut(s) 47
Cfr13I GGNCC 2 cut(s) 136, 473
ClaI ATCGAT 1 cut(s) 339
Csp6I GTAC 4 cut(s) 239, 839, 969, 975
CspCI CAANNNNNGTGG 2 cut(s) 1081, 1116
CviAII CATG 5 cut(s) 120, 332, 419, 440, 794
CviQI GTAC 4 cut(s) 239, 839, 969, 975
DdeI CTNAG 4 cut(s) 125, 444, 1040, 1068
DpnI GATC 7 cut(s) 219, 264, 496, 615, 747, 819, 924
DpnII GATC 7 cut(s) 217, 262, 494, 613, 745, 817, 922
Eco130I CCWWGG 3 cut(s) 119, 140, 793
Eco24I GRGCYC 1 cut(s) 408
Eco47I GGWCC 1 cut(s) 136
Eco57I CTGAAG 2 cut(s) 42, 1068
Eco88I CYCGRG 1 cut(s) 159
Eco91I GGTNACC 1 cut(s) 422
EcoO109I RGGNCCY 2 cut(s) 136, 473
EcoO65I GGTNACC 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 694
EcoT14I CCWWGG 3 cut(s) 119, 140, 793
EcoT38I GRGCYC 1 cut(s) 408
ErhI CCWWGG 3 cut(s) 119, 140, 793
FaeI CATG 5 cut(s) 123, 335, 422, 443, 797
FalI AAGNNNNNCTT 4 cut(s) 261, 293, 582, 614
FaqI GGGAC 1 cut(s) 142
FatI CATG 5 cut(s) 119, 331, 418, 439, 793
FauI CCCGC 1 cut(s) 216
FbaI TGATCA 1 cut(s) 613
Fnu4HI GCNGC 3 cut(s) 324, 356, 906
FokI GGATG 3 cut(s) 378, 533, 838
FriOI GRGCYC 1 cut(s) 408
Fsp4HI GCNGC 3 cut(s) 324, 356, 906
FspBI CTAG 5 cut(s) 294, 477, 960, 972, 1026
GluI GCNGC 3 cut(s) 324, 356, 906
HaeIII GGCC 2 cut(s) 474, 508
Hin1II CATG 5 cut(s) 123, 335, 422, 443, 797
HindIII AAGCTT 1 cut(s) 1070
HinfI GANTC 3 cut(s) 10, 515, 798
HphI GGTGA 4 cut(s) 238, 434, 1075, 1100
Hpy188I TCNGA 7 cut(s) 520, 588, 610, 705, 759, 1041, 1087
Hpy188III TCNNGA 8 cut(s) 62, 159, 215, 269, 617, 664, 1124, 1137
HpyAV CCTTC 3 cut(s) 127, 169, 464
HpyCH4IV ACGT 1 cut(s) 659
HpyCH4V TGCA 5 cut(s) 34, 198, 248, 946, 1078
HpyF10VI GCNNNNNNNGC 3 cut(s) 195, 229, 361
HpyF3I CTNAG 4 cut(s) 125, 444, 1040, 1068
HpySE526I ACGT 1 cut(s) 659
Hsp92II CATG 5 cut(s) 123, 335, 422, 443, 797
KpnI GGTACC 1 cut(s) 242
Ksp22I TGATCA 1 cut(s) 613
Kzo9I GATC 7 cut(s) 217, 262, 494, 613, 745, 817, 922
LmnI GCTCC 2 cut(s) 44, 1126
Lsp1109I GCAGC 1 cut(s) 342
LweI GCATC 2 cut(s) 310, 511
MaeI CTAG 5 cut(s) 294, 477, 960, 972, 1026
MaeII ACGT 1 cut(s) 659
MaeIII GTNAC 2 cut(s) 422, 1063
MalI GATC 7 cut(s) 219, 264, 496, 615, 747, 819, 924
MboI GATC 7 cut(s) 217, 262, 494, 613, 745, 817, 922
MboII GAAGA 4 cut(s) 257, 692, 882, 1074
MfeI CAATTG 1 cut(s) 254
MflI RGATCY 2 cut(s) 817, 922
MhlI GDGCHC 2 cut(s) 408, 1048
MlyI GAGTC 1 cut(s) 19
MnlI CCTC 9 cut(s) 164, 200, 222, 360, 565, 568, 571, 693, 1140
MseI TTAA 3 cut(s) 6, 285, 834
MspA1I CMGCKG 2 cut(s) 355, 905
MspR9I CCNGG 1 cut(s) 696
MunI CAATTG 1 cut(s) 254
Mva1269I GAATGC 1 cut(s) 1078
MvaI CCWGG 1 cut(s) 696
MwoI GCNNNNNNNGC 3 cut(s) 195, 229, 361
NcoI CCATGG 2 cut(s) 119, 793
NdeII GATC 7 cut(s) 217, 262, 494, 613, 745, 817, 922
NlaIII CATG 5 cut(s) 123, 335, 422, 443, 797
NlaIV GGNNCC 4 cut(s) 138, 240, 924, 1128
NmuCI GTSAC 2 cut(s) 422, 1063
PctI GAATGC 1 cut(s) 1078
PfeI GAWTC 2 cut(s) 515, 798
PflMI CCANNNNNTGG 1 cut(s) 371
PkrI GCNGC 3 cut(s) 325, 357, 907
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
PpuMI RGGWCCY 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 694
PspEI GGTNACC 1 cut(s) 422
PspGI CCWGG 1 cut(s) 694
PspN4I GGNNCC 4 cut(s) 138, 240, 924, 1128
PspPI GGNCC 2 cut(s) 136, 473
PspPPI RGGWCCY 1 cut(s) 136
PstNI CAGNNNCTG 1 cut(s) 47
PsuI RGATCY 2 cut(s) 817, 922
RsaI GTAC 4 cut(s) 240, 840, 970, 976
RsaNI GTAC 4 cut(s) 239, 839, 969, 975
SaqAI TTAA 3 cut(s) 6, 285, 834
SatI GCNGC 3 cut(s) 324, 356, 906
Sau3AI GATC 7 cut(s) 217, 262, 494, 613, 745, 817, 922
Sau96I GGNCC 2 cut(s) 136, 473
ScaI AGTACT 2 cut(s) 970, 976
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 696
SduI GDGCHC 2 cut(s) 408, 1048
SfaNI GCATC 2 cut(s) 310, 511
SfcI CTRYAG 2 cut(s) 813, 909
SinI GGWCC 1 cut(s) 136
SmlI CTYRAG 1 cut(s) 664
SmoI CTYRAG 1 cut(s) 664
SpeI ACTAGT 1 cut(s) 971
SsiI CCGC 4 cut(s) 223, 324, 353, 905
SspMI CTAG 5 cut(s) 294, 477, 960, 972, 1026
StyD4I CCNGG 1 cut(s) 694
StyI CCWWGG 3 cut(s) 119, 140, 793
TaiI ACGT 1 cut(s) 662
TaqI TCGA 5 cut(s) 214, 306, 339, 542, 1138
TatI WGTACW 3 cut(s) 838, 968, 974
TauI GCSGC 2 cut(s) 326, 908
TfiI GAWTC 2 cut(s) 515, 798
Tru1I TTAA 3 cut(s) 6, 285, 834
Tru9I TTAA 3 cut(s) 6, 285, 834
TscAI CASTG 2 cut(s) 487, 1105
TseFI GTSAC 2 cut(s) 422, 1063
TseI GCWGC 1 cut(s) 355
Tsp45I GTSAC 2 cut(s) 422, 1063
TspDTI ATGAA 5 cut(s) 75, 348, 357, 402, 639
TspGWI ACGGA 1 cut(s) 1122
TspRI CASTG 2 cut(s) 487, 1105
Van91I CCANNNNNTGG 1 cut(s) 371
VpaK11BI GGWCC 1 cut(s) 136
XapI RAATTY 2 cut(s) 499, 766
XcmI CCANNNNNNNNNTGG 1 cut(s) 117
XspI CTAG 5 cut(s) 294, 477, 960, 972, 1026
ZrmI AGTACT 2 cut(s) 970, 976
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.