MD09G1068200.v1.1
TCP Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0009855
Physical Location & Seq
Forward (+)
4657685 .. 4660115
2431 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1068200.v1.1.491

Sequence Viewer

Length: 1152 bp
ATGATTAAGAGTCTCATTAGTGAAGCAGATTTTAAAGAAGCAGGAGCTGGCAGTGCAAGTCGTGATGAACAAGCTAATAAAACCTCATCAAACCCTAATTTATCTCGTTCATCAACTCCATGGCCAAGGTTGAAGGATCCAAGGATTGTACGTGTGTCCCGAGCTTTTGGAGGAAAGGACAGGCATAGCAAGGTTTGCACCATAAGAGGGCTTCGAGATCGGCGGGTGAGGCTATCGGTACCCACTGCAATCCAATTGTACGATCTTCAAGATAAGCTTGGTCTTAACCAGCCTAGCAAGGTTGTCGATTGGTTGCTTGATGCCGCTAAGCATGAAATCGATGAACTTCCTCCGCTGCCAATGCCACCACCCGGGACTTTTGGTTTAAATCATCCATCATTAGTGCTCACTTCATCTCATGATGATCAAACCAATGCTCATCCCCAATTATCTCATAATCATAGAGGAGAAGGCCCTAGCAGTGGAATAGATAGATCAAATGTTTGGCCTACTAATTTGGATGCTTTTTGGCGAGCAAAGTCGAAAGAAATTGCAAGAGACACAAGAAATGAGGAGGAGGAAGAAAAACGGAAGGATAATCTTGGAATATCAGATGATCAAAAACAAGCAGGCAATAATATTGATGGTAATTCATCAAACGCATTCTTAACCAGAGGTAGTAATACCAACCCTCCGTTCTTTCCAGGTCTCCTGAATAGTTCTACGAATATGCCTTATGCTTATCAAAATTGGGATCATCCTCATCAGACTTCAAGTTTTCCACTATCTCAATTAGGAAGCCATGGATTCCAATCCCAAACTACAGATCTCCACAATTTCCTTAATGTCCTCTCGTTGCCATCCACATTGTCTTTATCCACGACACAATCTTATTTTCCTTCGCATAACGCGGCGGCTACAGGAGAGATAGATCCAAGACAATTCAACCATTTGCAATTGCTAAACTCAAGTAGTAGTACTAGTACCTCACAAAACCTATTGCCCAATTCTCTTTCCACACCAGCTCTATACCCTAGTAGCCAAACTCTGAGAGCACCCCATTTGAGTATGGTAACTAAGCTTGTGCATTCTTCAAACAACACTGGAAGTGGTCATCAGTCAAATAACGATCAGGGGCCTCTGCCTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

384

Amino Acids

42.11

Weight (kDa)

7.96

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 58 - 195 7.3e-28 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 238
AccB1I GGYRCC 1 cut(s) 238
AccII CGCG 1 cut(s) 911
AciI CCGC 5 cut(s) 223, 324, 353, 911, 914
AclWI GGATC 4 cut(s) 131, 144, 762, 926
AcoI YGGCCR 1 cut(s) 122
AfaI GTAC 5 cut(s) 150, 240, 260, 979, 985
AfiI CCNNNNNNNGG 3 cut(s) 207, 371, 482
AflIII ACRYGT 1 cut(s) 151
AgsI TTSAA 5 cut(s) 133, 269, 774, 946, 1095
AhlI ACTAGT 1 cut(s) 980
AjnI CCWGG 1 cut(s) 703
AjuI GAANNNNNNNTTGG 2 cut(s) 680, 712
AluBI AGCT 6 cut(s) 47, 74, 164, 277, 1025, 1081
AluI AGCT 6 cut(s) 47, 74, 164, 277, 1025, 1081
Alw21I GWGCWC 2 cut(s) 408, 1057
Alw26I GTCTC 3 cut(s) 17, 552, 713
AlwI GGATC 4 cut(s) 131, 144, 762, 926
AlwNI CAGNNNCTG 1 cut(s) 47
Ama87I CYCGRG 2 cut(s) 159, 371
AoxI GGCC 4 cut(s) 122, 472, 506, 1136
ApeKI GCWGC 1 cut(s) 355
Asp718I GGTACC 1 cut(s) 238
AspS9I GGNCC 2 cut(s) 473, 1136
AsuC2I CCSGG 2 cut(s) 372, 373
AsuHPI GGTGA 1 cut(s) 238
AvaI CYCGRG 2 cut(s) 159, 371
BalI TGGCCA 1 cut(s) 124
BamHI GGATCC 1 cut(s) 136
BanI GGYRCC 1 cut(s) 238
Bbv12I GWGCWC 2 cut(s) 408, 1057
BbvI GCAGC 1 cut(s) 342
BccI CCATC 3 cut(s) 403, 638, 868
BcgI CGANNNNNNTGC 2 cut(s) 286, 320
BciT130I CCWGG 1 cut(s) 705
BclI TGATCA 2 cut(s) 424, 616
BcnI CCSGG 2 cut(s) 372, 373
BcoDI GTCTC 3 cut(s) 17, 552, 713
BcuI ACTAGT 1 cut(s) 980
BfaI CTAG 4 cut(s) 294, 477, 981, 1035
BfmI CTRYAG 2 cut(s) 822, 918
BglII AGATCT 1 cut(s) 826
BisI GCNGC 4 cut(s) 324, 356, 912, 915
BlpI GCTNAGC 1 cut(s) 327
BlsI GCNGC 4 cut(s) 325, 357, 913, 916
BmcAI AGTACT 1 cut(s) 979
Bme1390I CCNGG 3 cut(s) 372, 373, 705
BmeT110I CYCGRG 2 cut(s) 159, 371
BmgT120I GGNCC 2 cut(s) 473, 1136
BmiI GGNNCC 3 cut(s) 138, 240, 1137
BmrFI CCNGG 3 cut(s) 372, 373, 705
BmsI GCATC 2 cut(s) 310, 511
Bpu1102I GCTNAGC 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 952
BpuMI CCSGG 2 cut(s) 372, 373
Bsa29I ATCGAT 1 cut(s) 339
BsaAI YACGTR 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 811
BsaI GGTCTC 1 cut(s) 713
BsaJI CCNNGG 5 cut(s) 119, 125, 140, 371, 802
BsaXI ACNNNNNCTCC 2 cut(s) 676, 706
Bsc4I CCNNNNNNNGG 3 cut(s) 207, 371, 482
Bse1I ACTGG 1 cut(s) 1108
Bse8I GATNNNNATC 1 cut(s) 811
BseBI CCWGG 1 cut(s) 705
BseCI ATCGAT 1 cut(s) 339
BseDI CCNNGG 5 cut(s) 119, 125, 140, 371, 802
BseGI GGATG 5 cut(s) 391, 439, 526, 757, 860
BseJI GATNNNNATC 1 cut(s) 811
BseLI CCNNNNNNNGG 3 cut(s) 207, 371, 482
BseMII CTCAG 1 cut(s) 1040
BseNI ACTGG 1 cut(s) 1108
BseRI GAGGAG 3 cut(s) 480, 587, 590
BseXI GCAGC 1 cut(s) 342
Bsh1236I CGCG 1 cut(s) 911
BshFI GGCC 4 cut(s) 124, 474, 508, 1138
BshNI GGYRCC 1 cut(s) 238
BshVI ATCGAT 1 cut(s) 339
BsiHKAI GWGCWC 2 cut(s) 408, 1057
BsiHKCI CYCGRG 2 cut(s) 159, 371
BsiSI CCGG 1 cut(s) 372
BslFI GGGAC 2 cut(s) 142, 388
BslI CCNNNNNNNGG 3 cut(s) 207, 371, 482
BsmAI GTCTC 3 cut(s) 17, 552, 713
BsmFI GGGAC 2 cut(s) 142, 388
BsmI GAATGC 2 cut(s) 662, 1087
BsnI GGCC 4 cut(s) 124, 474, 508, 1138
Bso31I GGTCTC 1 cut(s) 713
BsoBI CYCGRG 2 cut(s) 159, 371
Bsp1286I GDGCHC 2 cut(s) 408, 1057
Bsp1720I GCTNAGC 1 cut(s) 327
Bsp19I CCATGG 2 cut(s) 119, 802
BspACI CCGC 5 cut(s) 223, 324, 353, 911, 914
BspANI GGCC 4 cut(s) 124, 474, 508, 1138
BspCNI CTCAG 1 cut(s) 1041
BspDI ATCGAT 1 cut(s) 339
BspFNI CGCG 1 cut(s) 911
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 3 cut(s) 138, 240, 1137
BspPI GGATC 4 cut(s) 131, 144, 762, 926
BspT107I GGYRCC 1 cut(s) 238
BspTNI GGTCTC 1 cut(s) 713
BsrI ACTGG 1 cut(s) 1108
BssECI CCNNGG 5 cut(s) 119, 125, 140, 371, 802
BssT1I CCWWGG 4 cut(s) 119, 125, 140, 802
Bst2UI CCWGG 1 cut(s) 705
BstAPI GCANNNNNTGC 1 cut(s) 195
BstBAI YACGTR 1 cut(s) 152
BstC8I GCNNGC 3 cut(s) 49, 534, 631
BstDEI CTNAG 3 cut(s) 327, 1049, 1077
BstDSI CCRYGG 2 cut(s) 119, 802
BstF5I GGATG 5 cut(s) 391, 439, 526, 757, 860
BstFNI CGCG 1 cut(s) 911
BstMAI GTCTC 3 cut(s) 17, 552, 713
BstMWI GCNNNNNNNGC 4 cut(s) 53, 195, 229, 361
BstNI CCWGG 1 cut(s) 705
BstSCI CCNGG 3 cut(s) 370, 371, 703
BstSFI CTRYAG 2 cut(s) 822, 918
BstUI CGCG 1 cut(s) 911
BstV1I GCAGC 1 cut(s) 342
BstX2I RGATCY 3 cut(s) 136, 826, 931
BstYI RGATCY 3 cut(s) 136, 826, 931
Bsu15I ATCGAT 1 cut(s) 339
BsuRI GGCC 4 cut(s) 124, 474, 508, 1138
BsuTUI ATCGAT 1 cut(s) 339
BtgI CCRYGG 2 cut(s) 119, 802
BtsCI GGATG 5 cut(s) 391, 439, 526, 757, 860
BtsI GCAGTG 3 cut(s) 58, 243, 487
BtsIMutI CAGTG 4 cut(s) 58, 243, 487, 1101
Cac8I GCNNGC 3 cut(s) 49, 534, 631
CaiI CAGNNNCTG 1 cut(s) 47
CciI TCATGA 1 cut(s) 418
Cfr13I GGNCC 2 cut(s) 473, 1136
Cfr9I CCCGGG 1 cut(s) 371
ClaI ATCGAT 1 cut(s) 339
Csp6I GTAC 5 cut(s) 149, 239, 259, 978, 984
CviAII CATG 4 cut(s) 120, 332, 419, 803
CviQI GTAC 5 cut(s) 149, 239, 259, 978, 984
DdeI CTNAG 3 cut(s) 327, 1049, 1077
DraI TTTAAA 2 cut(s) 34, 387
EaeI YGGCCR 1 cut(s) 122
Eco130I CCWWGG 4 cut(s) 119, 125, 140, 802
Eco31I GGTCTC 1 cut(s) 713
Eco88I CYCGRG 2 cut(s) 159, 371
EcoO109I RGGNCCY 2 cut(s) 473, 1136
EcoRII CCWGG 1 cut(s) 703
EcoT14I CCWWGG 4 cut(s) 119, 125, 140, 802
ErhI CCWWGG 4 cut(s) 119, 125, 140, 802
FaeI CATG 4 cut(s) 123, 335, 422, 806
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FaqI GGGAC 2 cut(s) 142, 388
FatI CATG 4 cut(s) 119, 331, 418, 802
FauI CCCGC 1 cut(s) 216
FbaI TGATCA 2 cut(s) 424, 616
Fnu4HI GCNGC 4 cut(s) 324, 356, 912, 915
FokI GGATG 5 cut(s) 378, 426, 533, 744, 847
Fsp4HI GCNGC 4 cut(s) 324, 356, 912, 915
FspBI CTAG 4 cut(s) 294, 477, 981, 1035
GluI GCNGC 4 cut(s) 324, 356, 912, 915
HaeIII GGCC 4 cut(s) 124, 474, 508, 1138
HapII CCGG 1 cut(s) 372
Hin1II CATG 4 cut(s) 123, 335, 422, 806
HindIII AAGCTT 2 cut(s) 275, 1079
HinfI GANTC 2 cut(s) 10, 807
HpaII CCGG 1 cut(s) 372
HphI GGTGA 1 cut(s) 238
Hpy188I TCNGA 3 cut(s) 613, 768, 1050
Hpy188III TCNNGA 6 cut(s) 62, 159, 215, 269, 419, 712
HpyAV CCTTC 4 cut(s) 127, 464, 586, 909
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 6 cut(s) 56, 198, 248, 554, 955, 1087
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 195, 229, 361
HpyF3I CTNAG 3 cut(s) 327, 1049, 1077
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 4 cut(s) 123, 335, 422, 806
KpnI GGTACC 1 cut(s) 242
Ksp22I TGATCA 2 cut(s) 424, 616
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 1 cut(s) 342
LweI GCATC 2 cut(s) 310, 511
MaeI CTAG 4 cut(s) 294, 477, 981, 1035
MaeII ACGT 1 cut(s) 151
MaeIII GTNAC 1 cut(s) 1072
MboII GAAGA 3 cut(s) 257, 593, 1083
MfeI CAATTG 2 cut(s) 254, 956
MflI RGATCY 3 cut(s) 136, 826, 931
MhlI GDGCHC 2 cut(s) 408, 1057
MlsI TGGCCA 1 cut(s) 124
MluNI TGGCCA 1 cut(s) 124
MlyI GAGTC 1 cut(s) 19
Mox20I TGGCCA 1 cut(s) 124
MscI TGGCCA 1 cut(s) 124
MseI TTAA 6 cut(s) 6, 33, 285, 386, 668, 843
Msp20I TGGCCA 1 cut(s) 124
MspA1I CMGCKG 1 cut(s) 355
MspI CCGG 1 cut(s) 372
MspR9I CCNGG 3 cut(s) 372, 373, 705
MunI CAATTG 2 cut(s) 254, 956
Mva1269I GAATGC 2 cut(s) 662, 1087
MvaI CCWGG 1 cut(s) 705
MvnI CGCG 1 cut(s) 911
MwoI GCNNNNNNNGC 4 cut(s) 53, 195, 229, 361
NciI CCSGG 2 cut(s) 372, 373
NcoI CCATGG 2 cut(s) 119, 802
NlaIII CATG 4 cut(s) 123, 335, 422, 806
NlaIV GGNNCC 3 cut(s) 138, 240, 1137
PagI TCATGA 1 cut(s) 418
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PctI GAATGC 2 cut(s) 662, 1087
PfeI GAWTC 1 cut(s) 807
PkrI GCNGC 4 cut(s) 325, 357, 913, 916
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
Ppu21I YACGTR 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 703
PspGI CCWGG 1 cut(s) 703
PspN4I GGNNCC 3 cut(s) 138, 240, 1137
PspPI GGNCC 2 cut(s) 473, 1136
PstNI CAGNNNCTG 1 cut(s) 47
PsuI RGATCY 3 cut(s) 136, 826, 931
RsaI GTAC 5 cut(s) 150, 240, 260, 979, 985
RsaNI GTAC 5 cut(s) 149, 239, 259, 978, 984
SaqAI TTAA 6 cut(s) 6, 33, 285, 386, 668, 843
SatI GCNGC 4 cut(s) 324, 356, 912, 915
Sau96I GGNCC 2 cut(s) 473, 1136
ScaI AGTACT 1 cut(s) 979
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 3 cut(s) 372, 373, 705
SduI GDGCHC 2 cut(s) 408, 1057
SfaNI GCATC 2 cut(s) 310, 511
SfcI CTRYAG 2 cut(s) 822, 918
SmaI CCCGGG 1 cut(s) 373
SmlI CTYRAG 1 cut(s) 967
SmoI CTYRAG 1 cut(s) 967
SpeI ACTAGT 1 cut(s) 980
SsiI CCGC 5 cut(s) 223, 324, 353, 911, 914
SspI AATATT 1 cut(s) 640
SspMI CTAG 4 cut(s) 294, 477, 981, 1035
StyD4I CCNGG 3 cut(s) 370, 371, 703
StyI CCWWGG 4 cut(s) 119, 125, 140, 802
TaiI ACGT 1 cut(s) 154
TaqI TCGA 5 cut(s) 214, 306, 339, 542, 1147
TatI WGTACW 1 cut(s) 977
TauI GCSGC 3 cut(s) 326, 914, 917
TfiI GAWTC 1 cut(s) 807
Tru1I TTAA 6 cut(s) 6, 33, 285, 386, 668, 843
Tru9I TTAA 6 cut(s) 6, 33, 285, 386, 668, 843
TscAI CASTG 4 cut(s) 58, 250, 487, 1108
TseI GCWGC 1 cut(s) 355
TspDTI ATGAA 6 cut(s) 81, 99, 348, 357, 402, 642
TspGWI ACGGA 2 cut(s) 604, 684
TspMI CCCGGG 1 cut(s) 371
TspRI CASTG 4 cut(s) 58, 250, 487, 1108
XmaI CCCGGG 1 cut(s) 371
XspI CTAG 4 cut(s) 294, 477, 981, 1035
ZrmI AGTACT 1 cut(s) 979
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.