Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008197

Physical Location & Seq

Genomic Coordinates Reverse (-)

464279 .. 467151

Gene Structure 2873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G02310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGGAAGAGGAAGAGTAGAGCTCAAGAGGATAGAGAACAAAATCAACAGACAAGTGACGTTTGCTAAACGTAGAAATGGTTTGCTGAAAAAAGCTTATGAGCTTTCTGTTCTCTGCGATGCTGAAGTCTCTCTCATCGTCTTCTCCAACCGTGGCAAGCTCTACGAGTTCTGCAGCACCTCCAACATGCTCAAGACACTGGAAAGGTATCAGAAGTGTAGCTATGGCTCCATTGAAGTCAACAACAAACCTGCTAAAGAGCTTGAGAACAGCTACAGAGAGTACTTGAAGCTGAAAGGTAGATATGAAAATCTGCAACGTCAGCAGAGAAATCTTCTTGGAGAGGATCTTGGACCTCTGAATTCAAAGGAGCTAGAGCAGCTTGAGCGTCAACTAGACGGCTCTCTGAAGCAAGTTCGCTGCATCAAGACACAGTATATGCTTGACCAGCTCTCTGATCTTCAAGGTAAGGAGCATATCTTGCTTGATGCCAACAGAGCTTTGTCAATGAAGCTGGAAGATATGATCGGCGTGAGACATCACCATATAGGAGGAGGATGGGAAGGTGGTGATCAACAGAATATTGCCTATGGACATCCTCAGGCTCATTCTCAGGGACTATACCAATCTCTTGAATGTGATCCCACTTTGCAAATTGGATATAGCCATCCAGTGTGCTCAGAGCAAATGGCTGTGACGGTGCAAGGTCAGTCCCAACAAGGAAACGGCTACATCCCTGGCTGGATGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

250

Amino Acids

28.58

Weight (kDa)

8.64

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	4.6e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	84 - 172	8.3e-26	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02310 AT3G02310 AT5G15800 AT5G15800
fragaria_vesca	FvH4_6g46420
malus_domestica	MD09G1073900.v1.1 MD17G1065400.v1.1
prunus_persica	Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1
pyrus_communis	pycom09g00110
rosa_chinensis	RchiOBHm_Chr2g0164951
rosa_laevigata	RLG00000021501
rosa_multiflora	Rmu_sc0001097.1_g000006
rosa_roxburghii	Rroxscaffold_2G00086170
rosa_rugosa	Rorug02G0511500 Rorug02G0511600
rosa_samantha	Rh2AG579900 Rh2BG590900 Rh2CG561600 Rh2DG601300
rosa_wichuraiana	Rw2G048130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	259
AclWI	GGATC	2 cut(s)	354, 635
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	2 cut(s)	144, 428
AfaI	GTAC	1 cut(s)	284
AgsI	TTSAA	5 cut(s)	236, 289, 366, 464, 635
AjnI	CCWGG	1 cut(s)	736
Alw21I	GWGCWC	2 cut(s)	24, 680
Alw26I	GTCTC	2 cut(s)	133, 529
AlwI	GGATC	2 cut(s)	354, 635
ApeKI	GCWGC	3 cut(s)	174, 379, 420
ApoI	RAATTY	1 cut(s)	361
AspS9I	GGNCC	1 cut(s)	353
AsuHPI	GGTGA	2 cut(s)	533, 581
AvaII	GGWCC	1 cut(s)	353
AxyI	CCTNAGG	1 cut(s)	600
BanII	GRGCYC	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	133
Bbv12I	GWGCWC	2 cut(s)	24, 680
BbvI	GCAGC	3 cut(s)	186, 391, 407
BccI	CCATC	2 cut(s)	552, 675
BceAI	ACGGC	2 cut(s)	415, 742
BciT130I	CCWGG	1 cut(s)	738
BclI	TGATCA	1 cut(s)	571
BcoDI	GTCTC	2 cut(s)	133, 529
BfaI	CTAG	2 cut(s)	374, 395
BfmI	CTRYAG	2 cut(s)	172, 274
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	3 cut(s)	175, 380, 421
BlsI	GCNGC	3 cut(s)	176, 381, 422
BmcAI	AGTACT	1 cut(s)	284
Bme1390I	CCNGG	1 cut(s)	738
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	353
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	1 cut(s)	738
BmsI	GCATC	4 cut(s)	109, 432, 478, 735
BpiI	GAAGAC	1 cut(s)	133
BplI	GAGNNNNNCTC	1 cut(s)	38
BpuEI	CTTGAG	4 cut(s)	8, 176, 284, 404
BsaJI	CCNNGG	2 cut(s)	151, 736
Bse1I	ACTGG	2 cut(s)	204, 671
Bse21I	CCTNAGG	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	738
BseDI	CCNNGG	2 cut(s)	151, 736
BseGI	GGATG	5 cut(s)	563, 595, 667, 732, 750
BseMII	CTCAG	3 cut(s)	614, 626, 693
BseNI	ACTGG	2 cut(s)	204, 671
BseRI	GAGGAG	1 cut(s)	567
BseXI	GCAGC	3 cut(s)	186, 391, 407
BsiHKAI	GWGCWC	2 cut(s)	24, 680
BslFI	GGGAC	2 cut(s)	630, 697
BsmAI	GTCTC	2 cut(s)	133, 529
BsmFI	GGGAC	2 cut(s)	630, 697
Bsp1286I	GDGCHC	2 cut(s)	24, 680
Bsp143I	GATC	5 cut(s)	346, 457, 525, 571, 640
BspCNI	CTCAG	3 cut(s)	613, 625, 692
BspLI	GGNNCC	1 cut(s)	229
BspMAI	CTGCAG	1 cut(s)	176
BspMI	ACCTGC	1 cut(s)	259
BspPI	GGATC	2 cut(s)	354, 635
BsrI	ACTGG	2 cut(s)	204, 671
BssECI	CCNNGG	2 cut(s)	151, 736
BssMI	GATC	5 cut(s)	346, 457, 525, 571, 640
Bst2UI	CCWGG	1 cut(s)	738
Bst4CI	ACNGT	3 cut(s)	152, 435, 700
Bst6I	CTCTTC	1 cut(s)	7
BstAPI	GCANNNNNTGC	1 cut(s)	481
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	3 cut(s)	600, 612, 679
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	5 cut(s)	563, 595, 667, 732, 750
BstKTI	GATC	5 cut(s)	349, 460, 528, 574, 643
BstMAI	GTCTC	2 cut(s)	133, 529
BstMBI	GATC	5 cut(s)	346, 457, 525, 571, 640
BstMWI	GCNNNNNNNGC	6 cut(s)	322, 379, 385, 448, 481, 497
BstNI	CCWGG	1 cut(s)	738
BstNSI	RCATGY	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	736
BstSFI	CTRYAG	2 cut(s)	172, 274
BstV1I	GCAGC	3 cut(s)	186, 391, 407
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
Bsu36I	CCTNAGG	1 cut(s)	600
BtgI	CCRYGG	1 cut(s)	151
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	5 cut(s)	563, 595, 667, 732, 750
BtsIMutI	CAGTG	2 cut(s)	197, 678
BveI	ACCTGC	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	353
CseI	GACGC	1 cut(s)	377
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	1 cut(s)	187
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	3 cut(s)	600, 612, 679
DpnI	GATC	5 cut(s)	348, 459, 527, 573, 642
DpnII	GATC	5 cut(s)	346, 457, 525, 571, 640
Eam1104I	CTCTTC	1 cut(s)	7
EarI	CTCTTC	1 cut(s)	7
Ecl136II	GAGCTC	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	353
Eco53kI	GAGCTC	1 cut(s)	22
Eco57I	CTGAAG	2 cut(s)	144, 428
Eco81I	CCTNAGG	1 cut(s)	600
EcoICRI	GAGCTC	1 cut(s)	22
EcoRI	GAATTC	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	736
EcoT38I	GRGCYC	1 cut(s)	24
FaeI	CATG	1 cut(s)	190
FaqI	GGGAC	2 cut(s)	630, 697
FatI	CATG	1 cut(s)	186
FbaI	TGATCA	1 cut(s)	571
Fnu4HI	GCNGC	3 cut(s)	175, 380, 421
FokI	GGATG	4 cut(s)	570, 582, 654, 719
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	3 cut(s)	175, 380, 421
FspBI	CTAG	2 cut(s)	374, 395
GluI	GCNGC	3 cut(s)	175, 380, 421
HgaI	GACGC	1 cut(s)	377
Hin1II	CATG	1 cut(s)	190
HincII	GTYRAC	2 cut(s)	241, 392
HindII	GTYRAC	2 cut(s)	241, 392
HindIII	AAGCTT	1 cut(s)	93
HphI	GGTGA	2 cut(s)	533, 581
Hpy166II	GTNNAC	2 cut(s)	241, 392
Hpy188I	TCNGA	5 cut(s)	213, 360, 408, 457, 682
Hpy188III	TCNNGA	4 cut(s)	25, 193, 427, 632
Hpy8I	GTNNAC	2 cut(s)	241, 392
HpyAV	CCTTC	1 cut(s)	557
HpyCH4III	ACNGT	3 cut(s)	152, 435, 700
HpyCH4IV	ACGT	3 cut(s)	59, 70, 319
HpyCH4V	TGCA	5 cut(s)	174, 316, 423, 652, 703
HpyF10VI	GCNNNNNNNGC	6 cut(s)	322, 379, 385, 448, 481, 497
HpyF3I	CTNAG	3 cut(s)	600, 612, 679
HpySE526I	ACGT	3 cut(s)	59, 70, 319
Hsp92II	CATG	1 cut(s)	190
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	5 cut(s)	346, 457, 525, 571, 640
LmnI	GCTCC	3 cut(s)	233, 370, 472
LpnPI	CCDG	9 cut(s)	185, 264, 461, 500, 587, 599, 684, 723, 727
Lsp1109I	GCAGC	3 cut(s)	186, 391, 407
LweI	GCATC	4 cut(s)	109, 432, 478, 735
MaeI	CTAG	2 cut(s)	374, 395
MaeII	ACGT	3 cut(s)	59, 70, 319
MaeIII	GTNAC	2 cut(s)	55, 694
MalI	GATC	5 cut(s)	348, 459, 527, 573, 642
MboI	GATC	5 cut(s)	346, 457, 525, 571, 640
MboII	GAAGA	6 cut(s)	18, 24, 133, 326, 452, 530
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	2 cut(s)	24, 680
MluCI	AATT	2 cut(s)	361, 654
MmeI	TCCRAC	2 cut(s)	171, 207
MnlI	CCTC	7 cut(s)	21, 190, 337, 366, 545, 548, 609
MspR9I	CCNGG	1 cut(s)	738
MvaI	CCWGG	1 cut(s)	738
MwoI	GCNNNNNNNGC	6 cut(s)	322, 379, 385, 448, 481, 497
NdeII	GATC	5 cut(s)	346, 457, 525, 571, 640
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	2 cut(s)	55, 694
NspI	RCATGY	1 cut(s)	190
PkrI	GCNGC	3 cut(s)	176, 381, 422
Psp124BI	GAGCTC	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	736
PspGI	CCWGG	1 cut(s)	736
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	353
PstI	CTGCAG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	346
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SacI	GAGCTC	1 cut(s)	24
SatI	GCNGC	3 cut(s)	175, 380, 421
Sau3AI	GATC	5 cut(s)	346, 457, 525, 571, 640
Sau96I	GGNCC	1 cut(s)	353
ScaI	AGTACT	1 cut(s)	284
ScrFI	CCNGG	1 cut(s)	738
SduI	GDGCHC	2 cut(s)	24, 680
SfaNI	GCATC	4 cut(s)	109, 432, 478, 735
SfcI	CTRYAG	2 cut(s)	172, 274
SinI	GGWCC	1 cut(s)	353
SmlI	CTYRAG	4 cut(s)	23, 191, 263, 383
SmoI	CTYRAG	4 cut(s)	23, 191, 263, 383
Sse9I	AATT	2 cut(s)	361, 654
SspI	AATATT	1 cut(s)	583
SspMI	CTAG	2 cut(s)	374, 395
SstI	GAGCTC	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	736
TaaI	ACNGT	3 cut(s)	152, 435, 700
TaiI	ACGT	3 cut(s)	62, 73, 322
TasI	AATT	2 cut(s)	361, 654
TatI	WGTACW	1 cut(s)	282
TscAI	CASTG	2 cut(s)	204, 678
TseFI	GTSAC	2 cut(s)	55, 694
TseI	GCWGC	3 cut(s)	174, 379, 420
Tsp45I	GTSAC	2 cut(s)	55, 694
TspDTI	ATGAA	2 cut(s)	321, 524
TspRI	CASTG	2 cut(s)	204, 678
VpaK11BI	GGWCC	1 cut(s)	353
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	1 cut(s)	190
XspI	CTAG	2 cut(s)	374, 395
ZrmI	AGTACT	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.