Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008197

Physical Location & Seq

Genomic Coordinates Reverse (-)

35419436 .. 35423745

Gene Structure 4310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g46420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGGGAGGGGAAGAGTGGAGCTGAAGAGAATAGAGAACAAGATAAACAGGCAAGTCACATTTGCAAAGAGAAGAAATGGGCTCTTAAAGAAAGCTTATGAGCTCTCTATTCTCTGTGACGCTGAGGTTGCTCTCATCATATTCTCTAACCGTGGGAAGCTCTATGAGTTCTGCAGCAGCTCCAGCATGCTCAAAACCCTTGAAAGGTACCAAAAATGTAGCTACGGTGCAATGGAAGTCCAAAAACCTGCCAAGGAACTTGAGGAGAGCAGCTATCGTGAATACTTGAAGCTGAAAACTAGATGCGAGTCTCTTCAACAAACTCAGAGAAACCTTCTTGGAGAAGACTTAGGGCCATTAAACACGAAGGAGCTTGAGCAGCTTGAGCGTCAGCTAGAGTCCTCCTTGAAGCATGTTAGGTCTACTAAGACCCAGCATATGATTGATCTGCTTTCTGACCTTCAGAGCAAGGAACATATGCTAATTGAAGCCAACAGAGATTTGAAAACGAAGTTGGATGAAATTGATTCAAGAACTCAACTTAGACAAACTTGGGAACATGGTCATGATCACCAGACTATGCTATATGGAACTCAACATGCTCAGACACAGGGACTTATGTTCCAGCCTTTAGATTGCAATCCCACCTTGCAAATAGGGTACAATGCTGTGGTGTCACAGGAAATGCCTGCAGCCACACCAGCCCATGCTCAACCCGTCAATGGTTTCATTCCTGGTTGGATGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

250

Amino Acids

28.71

Weight (kDa)

8.51

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.4e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	88 - 172	1.2e-25	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02310 AT3G02310 AT5G15800 AT5G15800
fragaria_vesca	FvH4_6g46420
malus_domestica	MD09G1073900.v1.1 MD17G1065400.v1.1
prunus_persica	Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1
pyrus_communis	pycom09g00110
rosa_chinensis	RchiOBHm_Chr2g0164951
rosa_laevigata	RLG00000021501
rosa_multiflora	Rmu_sc0001097.1_g000006
rosa_roxburghii	Rroxscaffold_2G00086170
rosa_rugosa	Rorug02G0511500 Rorug02G0511600
rosa_samantha	Rh2AG579900 Rh2BG590900 Rh2CG561600 Rh2DG601300
rosa_wichuraiana	Rw2G048130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
Acc65I	GGTACC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	207
AccI	GTMKAC	1 cut(s)	422
AcuI	CTGAAG	2 cut(s)	44, 446
AfaI	GTAC	2 cut(s)	209, 662
AfiI	CCNNNNNNNGG	2 cut(s)	204, 722
AgsI	TTSAA	7 cut(s)	203, 289, 317, 409, 488, 505, 531
AjnI	CCWGG	1 cut(s)	733
AjuI	GAANNNNNNNTTGG	2 cut(s)	497, 529
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	315
AoxI	GGCC	1 cut(s)	353
ApeKI	GCWGC	5 cut(s)	174, 177, 270, 379, 692
Asp718I	GGTACC	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	353
AsuHPI	GGTGA	1 cut(s)	563
BanI	GGYRCC	1 cut(s)	207
BanII	GRGCYC	2 cut(s)	84, 105
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	5 cut(s)	186, 189, 282, 391, 704
BciT130I	CCWGG	1 cut(s)	735
BclI	TGATCA	1 cut(s)	568
BcoDI	GTCTC	1 cut(s)	315
BfaI	CTAG	2 cut(s)	300, 395
BfmI	CTRYAG	2 cut(s)	172, 690
BfuAI	ACCTGC	1 cut(s)	256
BisI	GCNGC	5 cut(s)	175, 178, 271, 380, 693
BlsI	GCNGC	5 cut(s)	176, 179, 272, 381, 694
Bme1390I	CCNGG	1 cut(s)	735
BmgT120I	GGNCC	1 cut(s)	353
BmiI	GGNNCC	1 cut(s)	209
BmrFI	CCNGG	1 cut(s)	735
BmsI	GCATC	2 cut(s)	293, 732
BpiI	GAAGAC	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	166
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	3 cut(s)	281, 395, 404
BsaBI	GATNNNNATC	1 cut(s)	639
BsaJI	CCNNGG	2 cut(s)	151, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 722
Bse3DI	GCAATG	1 cut(s)	237
Bse8I	GATNNNNATC	1 cut(s)	639
BseBI	CCWGG	1 cut(s)	735
BseDI	CCNNGG	2 cut(s)	151, 252
BseGI	GGATG	2 cut(s)	523, 747
BseJI	GATNNNNATC	1 cut(s)	639
BseLI	CCNNNNNNNGG	2 cut(s)	204, 722
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	3 cut(s)	114, 338, 617
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	5 cut(s)	186, 189, 282, 391, 704
BseYI	CCCAGC	1 cut(s)	432
BshFI	GGCC	1 cut(s)	355
BshNI	GGYRCC	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	627
BslI	CCNNNNNNNGG	2 cut(s)	204, 722
BsmAI	GTCTC	1 cut(s)	315
BsmFI	GGGAC	1 cut(s)	627
BsnI	GGCC	1 cut(s)	355
Bsp1286I	GDGCHC	2 cut(s)	84, 105
Bsp143I	GATC	2 cut(s)	445, 568
BspANI	GGCC	1 cut(s)	355
BspCNI	CTCAG	3 cut(s)	115, 337, 616
BspHI	TCATGA	1 cut(s)	565
BspLI	GGNNCC	1 cut(s)	209
BspMAI	CTGCAG	2 cut(s)	176, 694
BspMI	ACCTGC	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	237
BssECI	CCNNGG	2 cut(s)	151, 252
BssMI	GATC	2 cut(s)	445, 568
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	735
Bst4CI	ACNGT	2 cut(s)	152, 227
Bst6I	CTCTTC	3 cut(s)	7, 20, 318
BstC8I	GCNNGC	2 cut(s)	188, 690
BstDEI	CTNAG	6 cut(s)	123, 324, 349, 426, 542, 603
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	2 cut(s)	523, 747
BstKTI	GATC	2 cut(s)	448, 571
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	2 cut(s)	445, 568
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 183, 379, 385, 701
BstNI	CCWGG	1 cut(s)	735
BstNSI	RCATGY	3 cut(s)	190, 416, 602
BstSCI	CCNGG	1 cut(s)	733
BstSFI	CTRYAG	2 cut(s)	172, 690
BstV1I	GCAGC	5 cut(s)	186, 189, 282, 391, 704
BstV2I	GAAGAC	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	355
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	2 cut(s)	523, 747
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	2 cut(s)	188, 690
CciI	TCATGA	1 cut(s)	565
Cfr13I	GGNCC	1 cut(s)	353
CseI	GACGC	2 cut(s)	128, 377
Csp6I	GTAC	2 cut(s)	208, 661
CviAII	CATG	6 cut(s)	187, 413, 560, 566, 599, 707
CviQI	GTAC	2 cut(s)	208, 661
DdeI	CTNAG	6 cut(s)	123, 324, 349, 426, 542, 603
DpnI	GATC	2 cut(s)	447, 570
DpnII	GATC	2 cut(s)	445, 568
Eam1104I	CTCTTC	3 cut(s)	7, 20, 318
EarI	CTCTTC	3 cut(s)	7, 20, 318
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	2 cut(s)	84, 105
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	2 cut(s)	44, 446
EcoICRI	GAGCTC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	733
EcoT14I	CCWWGG	1 cut(s)	252
EcoT38I	GRGCYC	2 cut(s)	84, 105
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	6 cut(s)	190, 416, 563, 569, 602, 710
FaqI	GGGAC	1 cut(s)	627
FatI	CATG	6 cut(s)	186, 412, 559, 565, 598, 706
FauNDI	CATATG	2 cut(s)	438, 477
FbaI	TGATCA	1 cut(s)	568
FblI	GTMKAC	1 cut(s)	422
Fnu4HI	GCNGC	5 cut(s)	175, 178, 271, 380, 693
FokI	GGATG	1 cut(s)	530
FriOI	GRGCYC	2 cut(s)	84, 105
Fsp4HI	GCNGC	5 cut(s)	175, 178, 271, 380, 693
FspBI	CTAG	2 cut(s)	300, 395
GluI	GCNGC	5 cut(s)	175, 178, 271, 380, 693
GsaI	CCCAGC	1 cut(s)	436
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	355
HgaI	GACGC	2 cut(s)	128, 377
Hin1II	CATG	6 cut(s)	190, 416, 563, 569, 602, 710
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	3 cut(s)	308, 398, 527
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	1 cut(s)	423
Hpy188I	TCNGA	5 cut(s)	327, 457, 465, 606, 749
Hpy188III	TCNNGA	3 cut(s)	278, 531, 566
Hpy8I	GTNNAC	1 cut(s)	423
HpyAV	CCTTC	3 cut(s)	344, 361, 470
HpyCH4III	ACNGT	2 cut(s)	152, 227
HpyCH4V	TGCA	6 cut(s)	65, 174, 230, 639, 652, 692
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 183, 379, 385, 701
HpyF3I	CTNAG	6 cut(s)	123, 324, 349, 426, 542, 603
Hsp92II	CATG	6 cut(s)	190, 416, 563, 569, 602, 710
KpnI	GGTACC	1 cut(s)	211
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	2 cut(s)	445, 568
LmnI	GCTCC	3 cut(s)	19, 185, 370
Lsp1109I	GCAGC	5 cut(s)	186, 189, 282, 391, 704
LweI	GCATC	2 cut(s)	293, 732
MaeI	CTAG	2 cut(s)	300, 395
MaeIII	GTNAC	3 cut(s)	55, 116, 675
MalI	GATC	2 cut(s)	447, 570
MboI	GATC	2 cut(s)	445, 568
MboII	GAAGA	5 cut(s)	24, 37, 84, 305, 356
MhlI	GDGCHC	2 cut(s)	84, 105
MluCI	AATT	2 cut(s)	483, 522
MlyI	GAGTC	2 cut(s)	317, 407
MmeI	TCCRAC	2 cut(s)	495, 719
MnlI	CCTC	3 cut(s)	118, 256, 412
MseI	TTAA	2 cut(s)	86, 359
MslI	CAYNNNNRTG	1 cut(s)	564
MspR9I	CCNGG	1 cut(s)	735
MvaI	CCWGG	1 cut(s)	735
MwoI	GCNNNNNNNGC	5 cut(s)	128, 183, 379, 385, 701
NdeI	CATATG	2 cut(s)	438, 477
NdeII	GATC	2 cut(s)	445, 568
NlaIII	CATG	6 cut(s)	190, 416, 563, 569, 602, 710
NlaIV	GGNNCC	1 cut(s)	209
NmuCI	GTSAC	3 cut(s)	55, 116, 675
NspI	RCATGY	3 cut(s)	190, 416, 602
PaeI	GCATGC	1 cut(s)	190
PagI	TCATGA	1 cut(s)	565
PfeI	GAWTC	1 cut(s)	527
PkrI	GCNGC	5 cut(s)	176, 179, 272, 381, 694
PleI	GAGTC	2 cut(s)	316, 406
PpsI	GAGTC	2 cut(s)	316, 406
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	733
PspFI	CCCAGC	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	733
PspN4I	GGNNCC	1 cut(s)	209
PspPI	GGNCC	1 cut(s)	353
PstI	CTGCAG	2 cut(s)	176, 694
RsaI	GTAC	2 cut(s)	209, 662
RsaNI	GTAC	2 cut(s)	208, 661
RseI	CAYNNNNRTG	1 cut(s)	564
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	86, 359
SatI	GCNGC	5 cut(s)	175, 178, 271, 380, 693
Sau3AI	GATC	2 cut(s)	445, 568
Sau96I	GGNCC	1 cut(s)	353
SchI	GAGTC	2 cut(s)	317, 407
ScrFI	CCNGG	1 cut(s)	735
SduI	GDGCHC	2 cut(s)	84, 105
SfaNI	GCATC	2 cut(s)	293, 732
SfcI	CTRYAG	2 cut(s)	172, 690
SmiMI	CAYNNNNRTG	1 cut(s)	564
SmlI	CTYRAG	3 cut(s)	260, 374, 383
SmoI	CTYRAG	3 cut(s)	260, 374, 383
SphI	GCATGC	1 cut(s)	190
Sse9I	AATT	2 cut(s)	483, 522
SspMI	CTAG	2 cut(s)	300, 395
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	733
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	2 cut(s)	152, 227
TasI	AATT	2 cut(s)	483, 522
TfiI	GAWTC	1 cut(s)	527
Tru1I	TTAA	2 cut(s)	86, 359
Tru9I	TTAA	2 cut(s)	86, 359
TseFI	GTSAC	3 cut(s)	55, 116, 675
TseI	GCWGC	5 cut(s)	174, 177, 270, 379, 692
Tsp45I	GTSAC	3 cut(s)	55, 116, 675
TspDTI	ATGAA	2 cut(s)	534, 718
XceI	RCATGY	3 cut(s)	190, 416, 602
XmiI	GTMKAC	1 cut(s)	422
XspI	CTAG	2 cut(s)	300, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.