Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008197

Physical Location & Seq

Genomic Coordinates Reverse (-)

5151334 .. 5154253

Gene Structure 2920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGGAAGAGGAAGAGTAGAGCTGAAGAGGATAGAGAACAAAATCAACAGACAAGTAACGTTTGCAAAGCGTAGGAACGGTTTGTTGAAGAAAGCTTATGAATTGTCTGTTCTCTGTGATGCTGAAGTTGCTCTCATCATCTTCTCCAACCGTGGAAAGCTCTATGAGTTTTGCAGCTCCTCAAACATGCTCAAGACACTTGATCGGTACCAGAAATGCAGCTATGGATCCATTGAAGTCAACAACAAACCTGCCAAAGAACTTGAGAACAGCTACAGAGAATATCTGAAGCTTAAGGGTAGATATGAGAACCTTCAACGTCAACAGAGAAATCTTCTTGGGGAGGATTTAGGACCTTTGAATTCAAAGGAGTTAGAGCAGCTTGAGCGTCAACTGGACGGCTCTCTCAAGCAAGTTCGGTCCATCAAGACACAGTACATGCTTGACCAGCTCTCGGATCTTCAAAATAAAGAGCAAATGTTGCTTGAAACCAATAGAGCTTTGGCAATGAAGCTGGATGATATGATTGGTGTGAGAAGTCATCATATGGGAGGAGGAGGAGGATGGGAAGGTGGTGAACAGAATGTTACCTACGCGCATCATCAAGCTCAGTCTCAGGGACTATACCAGCCTCTTGAATGCAATCCAACTCTGCAAATGGGGTATGATAATCCGGTATGCTCAGAGCAAATAACTGCGACAACCCAAGCTCAGGCGCAGCAGGGAAACGGTTACATCCCGGGGTGGATGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

251

Amino Acids

28.66

Weight (kDa)

8.69

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.8e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	84 - 172	1.3e-26	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02310 AT3G02310 AT5G15800 AT5G15800
fragaria_vesca	FvH4_6g46420
malus_domestica	MD09G1073900.v1.1 MD17G1065400.v1.1
prunus_persica	Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1
pyrus_communis	pycom09g00110
rosa_chinensis	RchiOBHm_Chr2g0164951
rosa_laevigata	RLG00000021501
rosa_multiflora	Rmu_sc0001097.1_g000006
rosa_roxburghii	Rroxscaffold_2G00086170
rosa_rugosa	Rorug02G0511500 Rorug02G0511600
rosa_samantha	Rh2AG579900 Rh2BG590900 Rh2CG561600 Rh2DG601300
rosa_wichuraiana	Rw2G048130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	259
Acc65I	GGTACC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	207
AccII	CGCG	1 cut(s)	596
AclI	AACGTT	1 cut(s)	59
AclWI	GGATC	3 cut(s)	222, 235, 465
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	3 cut(s)	44, 144, 308
AfaI	GTAC	2 cut(s)	209, 437
AfiI	CCNNNNNNNGG	2 cut(s)	454, 712
AflII	CTTAAG	1 cut(s)	293
AgsI	TTSAA	8 cut(s)	88, 236, 317, 361, 366, 464, 488, 638
Alw26I	GTCTC	1 cut(s)	618
AlwI	GGATC	3 cut(s)	222, 235, 465
Ama87I	CYCGRG	1 cut(s)	739
ApeKI	GCWGC	4 cut(s)	174, 219, 379, 718
ApoI	RAATTY	1 cut(s)	361
Asp718I	GGTACC	1 cut(s)	207
AspLEI	GCGC	2 cut(s)	598, 718
AspS9I	GGNCC	2 cut(s)	353, 420
AsuC2I	CCSGG	2 cut(s)	740, 741
AsuHPI	GGTGA	1 cut(s)	587
AvaI	CYCGRG	1 cut(s)	739
AvaII	GGWCC	2 cut(s)	353, 420
BamHI	GGATCC	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	207
BbvI	GCAGC	4 cut(s)	186, 231, 391, 730
BccI	CCATC	2 cut(s)	431, 558
BceAI	ACGGC	1 cut(s)	415
BcnI	CCSGG	2 cut(s)	740, 741
BcoDI	GTCTC	1 cut(s)	618
BfmI	CTRYAG	1 cut(s)	274
BfrI	CTTAAG	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	4 cut(s)	175, 220, 380, 719
BlsI	GCNGC	4 cut(s)	176, 221, 381, 720
Bme1390I	CCNGG	2 cut(s)	740, 741
Bme18I	GGWCC	2 cut(s)	353, 420
BmeT110I	CYCGRG	1 cut(s)	739
BmgT120I	GGNCC	2 cut(s)	353, 420
BmiI	GGNNCC	2 cut(s)	209, 229
BmrFI	CCNGG	2 cut(s)	740, 741
BmsI	GCATC	3 cut(s)	109, 607, 738
Bpu10I	CCTNAGC	1 cut(s)	711
BpuEI	CTTGAG	4 cut(s)	176, 284, 392, 404
BpuMI	CCSGG	2 cut(s)	740, 741
BsaJI	CCNNGG	3 cut(s)	151, 739, 740
BsaWI	WCCGGW	1 cut(s)	673
Bsc4I	CCNNNNNNNGG	2 cut(s)	454, 712
Bse1I	ACTGG	1 cut(s)	399
Bse3DI	GCAATG	1 cut(s)	513
BseDI	CCNNGG	3 cut(s)	151, 739, 740
BseGI	GGATG	4 cut(s)	523, 569, 735, 753
BseLI	CCNNNNNNNGG	2 cut(s)	454, 712
BseMI	GCAATG	1 cut(s)	513
BseMII	CTCAG	4 cut(s)	623, 629, 696, 725
BseNI	ACTGG	1 cut(s)	399
BseRI	GAGGAG	4 cut(s)	169, 567, 570, 573
BseXI	GCAGC	4 cut(s)	186, 231, 391, 730
Bsh1236I	CGCG	1 cut(s)	596
BshNI	GGYRCC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	739
BsiSI	CCGG	2 cut(s)	674, 740
BslFI	GGGAC	1 cut(s)	633
BslI	CCNNNNNNNGG	2 cut(s)	454, 712
BsmAI	GTCTC	1 cut(s)	618
BsmFI	GGGAC	1 cut(s)	633
BsmI	GAATGC	1 cut(s)	644
BsoBI	CYCGRG	1 cut(s)	739
Bsp143I	GATC	3 cut(s)	202, 227, 457
BspCNI	CTCAG	4 cut(s)	622, 628, 695, 724
BspFNI	CGCG	1 cut(s)	596
BspLI	GGNNCC	2 cut(s)	209, 229
BspMI	ACCTGC	1 cut(s)	259
BspPI	GGATC	3 cut(s)	222, 235, 465
BspT107I	GGYRCC	1 cut(s)	207
BspTI	CTTAAG	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	513
BsrI	ACTGG	1 cut(s)	399
BssECI	CCNNGG	3 cut(s)	151, 739, 740
BssMI	GATC	3 cut(s)	202, 227, 457
Bst4CI	ACNGT	4 cut(s)	80, 152, 435, 731
Bst6I	CTCTTC	2 cut(s)	7, 20
BstAFI	CTTAAG	1 cut(s)	293
BstAPI	GCANNNNNTGC	1 cut(s)	481
BstDEI	CTNAG	4 cut(s)	609, 615, 682, 711
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	4 cut(s)	523, 569, 735, 753
BstFNI	CGCG	1 cut(s)	596
BstHHI	GCGC	2 cut(s)	598, 718
BstKTI	GATC	3 cut(s)	205, 230, 460
BstMAI	GTCTC	1 cut(s)	618
BstMBI	GATC	3 cut(s)	202, 227, 457
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 385, 448, 481
BstNSI	RCATGY	2 cut(s)	190, 442
BstSCI	CCNGG	2 cut(s)	738, 739
BstSFI	CTRYAG	1 cut(s)	274
BstUI	CGCG	1 cut(s)	596
BstV1I	GCAGC	4 cut(s)	186, 231, 391, 730
BstX2I	RGATCY	2 cut(s)	227, 457
BstYI	RGATCY	2 cut(s)	227, 457
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	4 cut(s)	523, 569, 735, 753
BveI	ACCTGC	1 cut(s)	259
CfoI	GCGC	2 cut(s)	598, 718
Cfr13I	GGNCC	2 cut(s)	353, 420
Cfr9I	CCCGGG	1 cut(s)	739
CseI	GACGC	1 cut(s)	377
Csp6I	GTAC	2 cut(s)	208, 436
CviAII	CATG	2 cut(s)	187, 439
CviQI	GTAC	2 cut(s)	208, 436
DdeI	CTNAG	4 cut(s)	609, 615, 682, 711
DpnI	GATC	3 cut(s)	204, 229, 459
DpnII	GATC	3 cut(s)	202, 227, 457
Eam1104I	CTCTTC	2 cut(s)	7, 20
EarI	CTCTTC	2 cut(s)	7, 20
Eco47I	GGWCC	2 cut(s)	353, 420
Eco57I	CTGAAG	3 cut(s)	44, 144, 308
Eco88I	CYCGRG	1 cut(s)	739
EcoO109I	RGGNCCY	1 cut(s)	353
EcoRI	GAATTC	1 cut(s)	361
FaeI	CATG	2 cut(s)	190, 442
FaqI	GGGAC	1 cut(s)	633
FatI	CATG	2 cut(s)	186, 438
FauNDI	CATATG	1 cut(s)	546
Fnu4HI	GCNGC	4 cut(s)	175, 220, 380, 719
FokI	GGATG	3 cut(s)	530, 576, 722
Fsp4HI	GCNGC	4 cut(s)	175, 220, 380, 719
GlaI	GCGC	2 cut(s)	597, 717
GluI	GCNGC	4 cut(s)	175, 220, 380, 719
HapII	CCGG	2 cut(s)	674, 740
HgaI	GACGC	1 cut(s)	377
HhaI	GCGC	2 cut(s)	598, 718
Hin1II	CATG	2 cut(s)	190, 442
Hin6I	GCGC	2 cut(s)	596, 716
HinP1I	GCGC	2 cut(s)	596, 716
HincII	GTYRAC	3 cut(s)	241, 323, 392
HindII	GTYRAC	3 cut(s)	241, 323, 392
HindIII	AAGCTT	2 cut(s)	93, 290
HpaII	CCGG	2 cut(s)	674, 740
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	4 cut(s)	241, 323, 392, 578
Hpy188I	TCNGA	4 cut(s)	288, 457, 685, 755
Hpy188III	TCNNGA	3 cut(s)	193, 427, 635
Hpy8I	GTNNAC	4 cut(s)	241, 323, 392, 578
HpyAV	CCTTC	2 cut(s)	323, 563
HpyCH4III	ACNGT	4 cut(s)	80, 152, 435, 731
HpyCH4IV	ACGT	2 cut(s)	59, 319
HpyCH4V	TGCA	5 cut(s)	65, 174, 219, 642, 655
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 385, 448, 481
HpyF3I	CTNAG	4 cut(s)	609, 615, 682, 711
HpySE526I	ACGT	2 cut(s)	59, 319
Hsp92II	CATG	2 cut(s)	190, 442
HspAI	GCGC	2 cut(s)	596, 716
KpnI	GGTACC	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	202, 227, 457
LmnI	GCTCC	1 cut(s)	182
Lsp1109I	GCAGC	4 cut(s)	186, 231, 391, 730
LweI	GCATC	3 cut(s)	109, 607, 738
MaeII	ACGT	2 cut(s)	59, 319
MaeIII	GTNAC	3 cut(s)	55, 586, 731
MalI	GATC	3 cut(s)	204, 229, 459
MboI	GATC	3 cut(s)	202, 227, 457
MboII	GAAGA	7 cut(s)	18, 24, 37, 100, 133, 326, 452
MflI	RGATCY	2 cut(s)	227, 457
MluCI	AATT	2 cut(s)	101, 361
MmeI	TCCRAC	2 cut(s)	171, 671
MnlI	CCTC	8 cut(s)	21, 190, 337, 545, 548, 551, 554, 642
MseI	TTAA	1 cut(s)	294
MspCI	CTTAAG	1 cut(s)	293
MspI	CCGG	2 cut(s)	674, 740
MspR9I	CCNGG	2 cut(s)	740, 741
Mva1269I	GAATGC	1 cut(s)	644
MvnI	CGCG	1 cut(s)	596
MwoI	GCNNNNNNNGC	4 cut(s)	128, 385, 448, 481
NciI	CCSGG	2 cut(s)	740, 741
NdeI	CATATG	1 cut(s)	546
NdeII	GATC	3 cut(s)	202, 227, 457
NlaIII	CATG	2 cut(s)	190, 442
NlaIV	GGNNCC	2 cut(s)	209, 229
NspI	RCATGY	2 cut(s)	190, 442
PctI	GAATGC	1 cut(s)	644
PkrI	GCNGC	4 cut(s)	176, 221, 381, 720
PpuMI	RGGWCCY	1 cut(s)	353
Psp1406I	AACGTT	1 cut(s)	59
Psp5II	RGGWCCY	1 cut(s)	353
PspN4I	GGNNCC	2 cut(s)	209, 229
PspPI	GGNCC	2 cut(s)	353, 420
PspPPI	RGGWCCY	1 cut(s)	353
PsuI	RGATCY	2 cut(s)	227, 457
RsaI	GTAC	2 cut(s)	209, 437
RsaNI	GTAC	2 cut(s)	208, 436
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	4 cut(s)	175, 220, 380, 719
Sau3AI	GATC	3 cut(s)	202, 227, 457
Sau96I	GGNCC	2 cut(s)	353, 420
ScrFI	CCNGG	2 cut(s)	740, 741
SfaNI	GCATC	3 cut(s)	109, 607, 738
SfcI	CTRYAG	1 cut(s)	274
SinI	GGWCC	2 cut(s)	353, 420
SmaI	CCCGGG	1 cut(s)	741
SmlI	CTYRAG	5 cut(s)	191, 263, 293, 383, 407
SmoI	CTYRAG	5 cut(s)	191, 263, 293, 383, 407
Sse9I	AATT	2 cut(s)	101, 361
StyD4I	CCNGG	2 cut(s)	738, 739
TaaI	ACNGT	4 cut(s)	80, 152, 435, 731
TaiI	ACGT	2 cut(s)	62, 322
TaqII	GACCGA	1 cut(s)	408
TasI	AATT	2 cut(s)	101, 361
TatI	WGTACW	1 cut(s)	435
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TseI	GCWGC	4 cut(s)	174, 219, 379, 718
TspDTI	ATGAA	2 cut(s)	114, 524
TspMI	CCCGGG	1 cut(s)	739
Vha464I	CTTAAG	1 cut(s)	293
VpaK11BI	GGWCC	2 cut(s)	353, 420
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	2 cut(s)	190, 442
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XmaI	CCCGGG	1 cut(s)	739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.