Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0008197

Physical Location & Seq

Genomic Coordinates Forward (+)

5120719 .. 5125855

Gene Structure 5137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1073900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGGGAGAGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACATTTGCAAAGAGAAGAAATGGGCTTCTGAAGAAAGCTTATGAGCTCTCCGTTCTCTGTGATGCTGAGGTTGCTCTCATCGTCTTTTCCAACCGTGGCAAGCTCTATGAGTTTTGTAGCAGCCCTAGCATTCTCCAAACCGTAGACAGGTACCAAAAGTGCAGTTATGGTGCGGTGGATCAAGTCAACATACCTGCAAAGGAACTTGAGAGCAGCTATCGTGAGTACATGAAACTCAAAGGTAGATGTGAGTCCCTACAACGAACTCAGAGAAATCTTCTTGGTGAGGAATTGGGTCCATTAAACACAAAGGAGCTTGAGCAGCTTGAGCGCCAACTTGAGGCCTCCTTGAAGCAAGTTAGGTCCACTAAGACCCAGTATATGCTGGACCAACTTTCTGCCCTTCAGAACAAGGAACAACTGTTAATCGAAGCCAACAGGGATTTGACAATGAAGTTGGATGAAATTGGTTCAAGAAATCAACTTAGACAGTCATGGGAAGGAGGTGACCAGGGTATGGCATATGGAACCCAACATCACCATGCTCAATCCCAAGGGTTCTTCCAGCCTTTAGATTGCAATCCCACTTTGCAAATAGGGTACCCTGCAGAGGGGTCAGAGCAGATGGGTGCCACAACTCATGCCCAACAAGTGAACTGTTTCATCCCCGGATGGATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

247

Amino Acids

28.09

Weight (kDa)

8.47

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.1e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	86 - 172	1.6e-26	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02310 AT3G02310 AT5G15800 AT5G15800
fragaria_vesca	FvH4_6g46420
malus_domestica	MD09G1073900.v1.1 MD17G1065400.v1.1
prunus_persica	Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1
pyrus_communis	pycom09g00110
rosa_chinensis	RchiOBHm_Chr2g0164951
rosa_laevigata	RLG00000021501
rosa_multiflora	Rmu_sc0001097.1_g000006
rosa_roxburghii	Rroxscaffold_2G00086170
rosa_rugosa	Rorug02G0511500 Rorug02G0511600
rosa_samantha	Rh2AG579900 Rh2BG590900 Rh2CG561600 Rh2DG601300
rosa_wichuraiana	Rw2G048130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	259
Acc65I	GGTACC	2 cut(s)	207, 657
AccB1I	GGYRCC	3 cut(s)	207, 657, 686
AccB7I	CCANNNNNTGG	1 cut(s)	574
AccI	GTMKAC	1 cut(s)	201
AciI	CCGC	1 cut(s)	230
AclWI	GGATC	1 cut(s)	243
AcuI	CTGAAG	3 cut(s)	44, 107, 446
AfaI	GTAC	3 cut(s)	209, 284, 659
AfiI	CCNNNNNNNGG	5 cut(s)	204, 397, 574, 667, 668
AgsI	TTSAA	2 cut(s)	409, 531
AjnI	CCWGG	1 cut(s)	567
AluBI	AGCT	7 cut(s)	22, 95, 103, 160, 273, 373, 382
AluI	AGCT	7 cut(s)	22, 95, 103, 160, 273, 373, 382
Alw21I	GWGCWC	1 cut(s)	105
AlwI	GGATC	1 cut(s)	243
AoxI	GGCC	1 cut(s)	399
ApeKI	GCWGC	3 cut(s)	177, 270, 379
Asp700I	GAANNNNTTC	1 cut(s)	716
Asp718I	GGTACC	2 cut(s)	207, 657
AspLEI	GCGC	1 cut(s)	390
AspS9I	GGNCC	3 cut(s)	353, 420, 445
AsuC2I	CCSGG	1 cut(s)	726
AsuHPI	GGTGA	3 cut(s)	353, 575, 587
AvaII	GGWCC	3 cut(s)	353, 420, 445
BanI	GGYRCC	3 cut(s)	207, 657, 686
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	189, 282, 391
BccI	CCATC	2 cut(s)	676, 723
BciT130I	CCWGG	1 cut(s)	569
BcnI	CCSGG	1 cut(s)	726
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	663
BfoI	RGCGCY	1 cut(s)	391
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	3 cut(s)	178, 271, 380
BlsI	GCNGC	3 cut(s)	179, 272, 381
Bme1390I	CCNGG	2 cut(s)	569, 726
Bme18I	GGWCC	3 cut(s)	353, 420, 445
BmgT120I	GGNCC	3 cut(s)	353, 420, 445
BmiI	GGNNCC	5 cut(s)	209, 354, 586, 659, 688
BmrFI	CCNGG	2 cut(s)	569, 726
BmrI	ACTGGG	1 cut(s)	427
BmsI	GCATC	2 cut(s)	109, 723
BmuI	ACTGGG	1 cut(s)	427
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	4 cut(s)	284, 395, 404, 416
BpuMI	CCSGG	1 cut(s)	726
BsaBI	GATNNNNATC	1 cut(s)	636
BsaJI	CCNNGG	4 cut(s)	151, 568, 610, 724
Bsc4I	CCNNNNNNNGG	5 cut(s)	204, 397, 574, 667, 668
Bse1I	ACTGG	1 cut(s)	433
Bse8I	GATNNNNATC	1 cut(s)	636
BseBI	CCWGG	1 cut(s)	569
BseDI	CCNNGG	4 cut(s)	151, 568, 610, 724
BseGI	GGATG	4 cut(s)	523, 720, 734, 738
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	5 cut(s)	204, 397, 574, 667, 668
BseMII	CTCAG	2 cut(s)	114, 338
BseNI	ACTGG	1 cut(s)	433
BseXI	GCAGC	3 cut(s)	189, 282, 391
BsgI	GTGCAG	1 cut(s)	238
BshFI	GGCC	1 cut(s)	401
BshNI	GGYRCC	3 cut(s)	207, 657, 686
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	726
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	5 cut(s)	204, 397, 574, 667, 668
BsmFI	GGGAC	1 cut(s)	295
BsmI	GAATGC	1 cut(s)	186
BsnI	GGCC	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	235
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	1 cut(s)	401
BspCNI	CTCAG	2 cut(s)	115, 337
BspLI	GGNNCC	5 cut(s)	209, 354, 586, 659, 688
BspMAI	CTGCAG	1 cut(s)	667
BspMI	ACCTGC	1 cut(s)	259
BspPI	GGATC	1 cut(s)	243
BspT107I	GGYRCC	3 cut(s)	207, 657, 686
BsrI	ACTGG	1 cut(s)	433
BssECI	CCNNGG	4 cut(s)	151, 568, 610, 724
BssMI	GATC	1 cut(s)	235
BssT1I	CCWWGG	1 cut(s)	610
Bst2UI	CCWGG	1 cut(s)	569
Bst4CI	ACNGT	5 cut(s)	152, 199, 480, 549, 716
Bst6I	CTCTTC	2 cut(s)	7, 20
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	4 cut(s)	123, 324, 426, 542
BstDSI	CCRYGG	1 cut(s)	151
BstEII	GGTNACC	1 cut(s)	563
BstF5I	GGATG	4 cut(s)	523, 720, 734, 738
BstH2I	RGCGCY	1 cut(s)	391
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 183, 379, 385
BstNI	CCWGG	1 cut(s)	569
BstPI	GGTNACC	1 cut(s)	563
BstSCI	CCNGG	2 cut(s)	567, 724
BstSFI	CTRYAG	1 cut(s)	663
BstV1I	GCAGC	3 cut(s)	189, 282, 391
BsuRI	GGCC	1 cut(s)	401
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	4 cut(s)	523, 720, 734, 738
BveI	ACCTGC	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	158
CfoI	GCGC	1 cut(s)	390
Cfr13I	GGNCC	3 cut(s)	353, 420, 445
Csp6I	GTAC	3 cut(s)	208, 283, 658
CviAII	CATG	4 cut(s)	286, 552, 599, 698
CviQI	GTAC	3 cut(s)	208, 283, 658
DdeI	CTNAG	4 cut(s)	123, 324, 426, 542
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
Eam1104I	CTCTTC	2 cut(s)	7, 20
EarI	CTCTTC	2 cut(s)	7, 20
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	610
Eco147I	AGGCCT	1 cut(s)	401
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	3 cut(s)	353, 420, 445
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	3 cut(s)	44, 107, 446
Eco91I	GGTNACC	1 cut(s)	563
EcoICRI	GAGCTC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	563
EcoRII	CCWGG	1 cut(s)	567
EcoT14I	CCWWGG	1 cut(s)	610
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	610
FaeI	CATG	4 cut(s)	289, 555, 602, 701
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	4 cut(s)	285, 551, 598, 697
FauNDI	CATATG	1 cut(s)	580
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	3 cut(s)	178, 271, 380
FokI	GGATG	2 cut(s)	530, 707
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	3 cut(s)	178, 271, 380
FspBI	CTAG	1 cut(s)	183
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	3 cut(s)	178, 271, 380
HaeII	RGCGCY	1 cut(s)	391
HaeIII	GGCC	1 cut(s)	401
HapII	CCGG	1 cut(s)	726
HhaI	GCGC	1 cut(s)	390
Hin1II	CATG	4 cut(s)	289, 555, 602, 701
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	1 cut(s)	308
HpaII	CCGG	1 cut(s)	726
HphI	GGTGA	3 cut(s)	353, 575, 587
Hpy166II	GTNNAC	4 cut(s)	202, 244, 423, 712
Hpy188I	TCNGA	4 cut(s)	87, 327, 465, 676
Hpy188III	TCNNGA	2 cut(s)	278, 531
Hpy8I	GTNNAC	4 cut(s)	202, 244, 423, 712
HpyAV	CCTTC	2 cut(s)	470, 551
HpyCH4III	ACNGT	5 cut(s)	152, 199, 480, 549, 716
HpyCH4V	TGCA	6 cut(s)	65, 219, 254, 636, 649, 665
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 183, 379, 385
HpyF3I	CTNAG	4 cut(s)	123, 324, 426, 542
Hsp92II	CATG	4 cut(s)	289, 555, 602, 701
HspAI	GCGC	1 cut(s)	388
KpnI	GGTACC	2 cut(s)	211, 661
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	2 cut(s)	19, 370
Lsp1109I	GCAGC	3 cut(s)	189, 282, 391
LweI	GCATC	2 cut(s)	109, 723
MaeI	CTAG	1 cut(s)	183
MaeIII	GTNAC	2 cut(s)	55, 563
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	6 cut(s)	24, 37, 84, 100, 326, 610
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	2 cut(s)	347, 522
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	2 cut(s)	171, 495
MnlI	CCTC	7 cut(s)	21, 118, 337, 391, 412, 554, 661
MroXI	GAANNNNTTC	1 cut(s)	716
MseI	TTAA	2 cut(s)	359, 482
MslI	CAYNNNNRTG	1 cut(s)	597
MspI	CCGG	1 cut(s)	726
MspR9I	CCNGG	2 cut(s)	569, 726
Mva1269I	GAATGC	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	569
MwoI	GCNNNNNNNGC	4 cut(s)	128, 183, 379, 385
NciI	CCSGG	1 cut(s)	726
NdeI	CATATG	1 cut(s)	580
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	4 cut(s)	289, 555, 602, 701
NlaIV	GGNNCC	5 cut(s)	209, 354, 586, 659, 688
NmuCI	GTSAC	2 cut(s)	55, 563
PceI	AGGCCT	1 cut(s)	401
PctI	GAATGC	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	716
PflMI	CCANNNNNTGG	1 cut(s)	574
PkrI	GCNGC	3 cut(s)	179, 272, 381
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	567
PspEI	GGTNACC	1 cut(s)	563
PspGI	CCWGG	1 cut(s)	567
PspN4I	GGNNCC	5 cut(s)	209, 354, 586, 659, 688
PspPI	GGNCC	3 cut(s)	353, 420, 445
PstI	CTGCAG	1 cut(s)	667
RsaI	GTAC	3 cut(s)	209, 284, 659
RsaNI	GTAC	3 cut(s)	208, 283, 658
RseI	CAYNNNNRTG	1 cut(s)	597
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	359, 482
SatI	GCNGC	3 cut(s)	178, 271, 380
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	3 cut(s)	353, 420, 445
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	2 cut(s)	569, 726
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	2 cut(s)	109, 723
SfcI	CTRYAG	1 cut(s)	663
SinI	GGWCC	3 cut(s)	353, 420, 445
SmiMI	CAYNNNNRTG	1 cut(s)	597
SmlI	CTYRAG	4 cut(s)	263, 374, 383, 395
SmoI	CTYRAG	4 cut(s)	263, 374, 383, 395
Sse9I	AATT	2 cut(s)	347, 522
SseBI	AGGCCT	1 cut(s)	401
SsiI	CCGC	1 cut(s)	230
SspMI	CTAG	1 cut(s)	183
SstI	GAGCTC	1 cut(s)	105
StuI	AGGCCT	1 cut(s)	401
StyD4I	CCNGG	2 cut(s)	567, 724
StyI	CCWWGG	1 cut(s)	610
TaaI	ACNGT	5 cut(s)	152, 199, 480, 549, 716
TaqI	TCGA	1 cut(s)	486
TasI	AATT	2 cut(s)	347, 522
TatI	WGTACW	1 cut(s)	282
Tru1I	TTAA	2 cut(s)	359, 482
Tru9I	TTAA	2 cut(s)	359, 482
TseFI	GTSAC	2 cut(s)	55, 563
TseI	GCWGC	3 cut(s)	177, 270, 379
Tsp45I	GTSAC	2 cut(s)	55, 563
TspDTI	ATGAA	4 cut(s)	302, 524, 534, 709
TspGWI	ACGGA	1 cut(s)	97
Van91I	CCANNNNNTGG	1 cut(s)	574
VpaK11BI	GGWCC	3 cut(s)	353, 420, 445
XmiI	GTMKAC	1 cut(s)	201
XmnI	GAANNNNTTC	1 cut(s)	716
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.