Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008197

Physical Location & Seq

Genomic Coordinates Reverse (-)

64225908 .. 64226309

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0511600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGACAAGGAAGCGGGAAAGGTGGTGGAGGTGGACAAGGACGCGGACATGGAGGGGGTAAAGGAGGAGGCGGCGGCGGACAAGGTGGAGGACATGGAGGGGGTAAAGGAGGAGGAGGCGGCGGCGGACAAGGTGGAGGACAAGGAGGGGGTAAAGGAGGAGGCGGTGGCGGACAAGGTGGCGGACATGGATGGGGTAAAGGAGGAGGCGGCGGCGGACAAGGTGGAGGACATGGAGGCAGTAAAGGAGGAGGCAGGGGTGGACAAGGTGGCGGACATGGAGGCGGTAAAGGAGGAGGCGGCGGCGGATACGGAGATGGAGGTGGCGGTCAAGGAGGAAGCCGTGGCGGACGAGGTGGTGGGGGAGGAAACTGAAGGCAGACCGATGCTTTATGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

133

Amino Acids

14.3

Weight (kDa)

4.05

Isoelectric Point (pI)

19.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02310 AT3G02310 AT5G15800 AT5G15800
fragaria_vesca	FvH4_6g46420
malus_domestica	MD09G1073900.v1.1 MD17G1065400.v1.1
prunus_persica	Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1
pyrus_communis	pycom09g00110
rosa_chinensis	RchiOBHm_Chr2g0164951
rosa_laevigata	RLG00000021501
rosa_multiflora	Rmu_sc0001097.1_g000006
rosa_roxburghii	Rroxscaffold_2G00086170
rosa_rugosa	Rorug02G0511500 Rorug02G0511600
rosa_samantha	Rh2AG579900 Rh2BG590900 Rh2CG561600 Rh2DG601300
rosa_wichuraiana	Rw2G048130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	44
AcuI	CTGAAG	1 cut(s)	393
BccI	CCATC	2 cut(s)	185, 310
BceAI	ACGGC	1 cut(s)	326
BciVI	GTATCC	1 cut(s)	301
BfuI	GTATCC	1 cut(s)	301
BisI	GCNGC	8 cut(s)	72, 75, 120, 123, 210, 213, 300, 303
BlsI	GCNGC	8 cut(s)	73, 76, 121, 124, 211, 214, 301, 304
BmsI	GCATC	1 cut(s)	375
BsaJI	CCNNGG	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	1 cut(s)	196
BseRI	GAGGAG	7 cut(s)	80, 125, 128, 173, 218, 263, 308
Bsh1236I	CGCG	1 cut(s)	44
BspFNI	CGCG	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	342
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	44
BstUI	CGCG	1 cut(s)	44
BsuI	GTATCC	1 cut(s)	301
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	196
CseI	GACGC	1 cut(s)	50
CviAII	CATG	5 cut(s)	49, 94, 187, 232, 277
CviJI	RGCY	1 cut(s)	341
CviKI_1	RGCY	1 cut(s)	341
EciI	GGCGGA	8 cut(s)	92, 140, 185, 197, 230, 287, 320, 362
Eco57I	CTGAAG	1 cut(s)	393
FaeI	CATG	5 cut(s)	52, 97, 190, 235, 280
FaiI	YATR	6 cut(s)	50, 95, 188, 233, 278, 393
FatI	CATG	5 cut(s)	48, 93, 186, 231, 276
FauI	CCCGC	1 cut(s)	7
Fnu4HI	GCNGC	8 cut(s)	72, 75, 120, 123, 210, 213, 300, 303
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	8 cut(s)	72, 75, 120, 123, 210, 213, 300, 303
GluI	GCNGC	8 cut(s)	72, 75, 120, 123, 210, 213, 300, 303
HgaI	GACGC	1 cut(s)	50
Hin1II	CATG	5 cut(s)	52, 97, 190, 235, 280
Hpy166II	GTNNAC	2 cut(s)	34, 262
Hpy8I	GTNNAC	2 cut(s)	34, 262
HpyAV	CCTTC	1 cut(s)	368
Hsp92II	CATG	5 cut(s)	52, 97, 190, 235, 280
LpnPI	CCDG	1 cut(s)	240
LweI	GCATC	1 cut(s)	375
MvnI	CGCG	1 cut(s)	44
NlaIII	CATG	5 cut(s)	52, 97, 190, 235, 280
PkrI	GCNGC	8 cut(s)	73, 76, 121, 124, 211, 214, 301, 304
SatI	GCNGC	8 cut(s)	72, 75, 120, 123, 210, 213, 300, 303
SetI	ASST	9 cut(s)	24, 33, 87, 135, 180, 225, 270, 324, 357
SfaNI	GCATC	1 cut(s)	375
TaqII	GACCGA	1 cut(s)	397
TauI	GCSGC	8 cut(s)	74, 77, 122, 125, 212, 215, 302, 305
TspGWI	ACGGA	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.