Rmu_sc0001097.1_g000006

Developmental protein SEPALLATA

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001097.1
Physical Location & Seq
Reverse (-)
29808 .. 35596
5789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001097.1_g000006.1.cds

Sequence Viewer

Length: 1425 bp
atggggaggggaagagtggagctgaagagaatagagaacaagataaacaggcaagtcacatttgcaaagagaagaaatgggctcttaaagaaagcttatgagctctctgttctctgtgatgctgaggttgctctcatcatcttctctaaccgtggcaagctctatgagttctgcagcagctccagcatactcaaaacccttgaaaggtaccaaaaatgtagctatggtgcaatggaagtcaacgaacctgccaaggaacttgagagcagctatcgtgaatacttgaaactgaaaactagatgcgagtcacttcaacgaactcagagaaaccttcttggagaagacttgggcccattaaacacgaaggagcttgagcagcttgagcgtcagctagagtcctccttgaagcatgttaggtctacaaagacccagtctatgctcgatcagctttctgaccttcagagcaaggaacatatgctaatagaagccaacagagatttgacaatgaagttggatgaaattaattcaggaactcaacttagacaaacatgggaacgtggtcatgctcaccagaccatgctatatggaactcaacatgctcaaacccagggtcttatgttccagcctttagattgcaatcccaccttgcaaatagggtacaacgctgtggggtcacagcaaatgactgcagccactccagcccctactcaaccagtcaatggtttcattcctgccacaggcttggctcaacgggaagtaacattggtggaggatttaattgtggagacaggggtgtgggatgagggcaaaatcttgcggctgttttcactggaggaagcagaggctattattaatattcctttgagtcgaagggtgttggattcgagaagggtgcagttagagtccttgatttgtgtgttatgtgagacaaatcaggagtccactttacatctttgtaaggattgtgctttcactcagagggtgttgcagtccaatatggttttgagacaggtttgctatggacctcaacatgaaggccgagatttgcttcaatggttagctgcatgtgcagcggagttgtctccaacaagctttggagactttctgtttcttttgtatgggatttggaaggagagaaatgatcgggtttgggaccaaaagaagggggacgccagtgatgtggtgattcggacaatgtctagattacaggaatatcggtttcataccttgcacaatggggaaggaaagattagacgaagcaggatggtgcggtgggttgcacctccggtgggttttttgaagattaatgtcgatggggcattcgatcatgtgacccgcaaggggggagcgggttttgtgattcgtaatgaactcggggttatgctagcaggaggagcttgtcctctcactgggttattgtcttaa

Protein Analysis

474

Amino Acids

53.74

Weight (kDa)

8.51

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 256
Acc65I GGTACC 1 cut(s) 207
AccB1I GGYRCC 1 cut(s) 207
AccB7I CCANNNNNTGG 1 cut(s) 719
AccBSI CCGCTC 1 cut(s) 1349
AccI GTMKAC 1 cut(s) 419
AciI CCGC 5 cut(s) 817, 1073, 1270, 1336, 1349
AcuI CTGAAG 2 cut(s) 44, 443
AcyI GRCGYC 1 cut(s) 1170
AfaI GTAC 2 cut(s) 209, 659
AfiI CCNNNNNNNGG 8 cut(s) 204, 719, 737, 1162, 1289, 1341, 1342, 1409
AgsI TTSAA 6 cut(s) 203, 286, 314, 406, 1052, 1300
AjnI CCWGG 1 cut(s) 606
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 5 cut(s) 779, 920, 1000, 1086, 1092
Ama87I CYCGRG 1 cut(s) 1373
AoxI GGCC 2 cut(s) 349, 1036
ApaI GGGCCC 1 cut(s) 353
ApeKI GCWGC 7 cut(s) 174, 177, 267, 376, 689, 1061, 1070
ArsI GACNNNNNNTTYG 6 cut(s) 416, 448, 595, 627, 923, 955
AseI ATTAAT 3 cut(s) 522, 852, 1305
Asp718I GGTACC 1 cut(s) 207
AspS9I GGNCC 4 cut(s) 349, 350, 1022, 1153
AsuHPI GGTGA 2 cut(s) 560, 1195
AsuNHI GCTAGC 1 cut(s) 1384
AvaI CYCGRG 1 cut(s) 1373
AvaII GGWCC 2 cut(s) 1022, 1153
BaeGI GKGCMC 1 cut(s) 353
BanI GGYRCC 1 cut(s) 207
BanII GRGCYC 3 cut(s) 84, 105, 353
BbsI GAAGAC 1 cut(s) 348
Bbv12I GWGCWC 1 cut(s) 105
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 7 cut(s) 186, 189, 279, 388, 701, 1048, 1082
BccI CCATC 2 cut(s) 1258, 1307
BcgI CGANNNNNNTGC 2 cut(s) 874, 908
BciT130I CCWGG 1 cut(s) 608
BcoDI GTCTC 5 cut(s) 779, 920, 1000, 1086, 1092
BfaI CTAG 4 cut(s) 297, 392, 1200, 1385
BfmI CTRYAG 2 cut(s) 172, 687
BfuAI ACCTGC 1 cut(s) 256
BisI GCNGC 8 cut(s) 175, 178, 268, 377, 690, 818, 1062, 1071
BlsI GCNGC 8 cut(s) 176, 179, 269, 378, 691, 819, 1063, 1072
Bme1390I CCNGG 1 cut(s) 608
Bme18I GGWCC 2 cut(s) 1022, 1153
BmeT110I CYCGRG 1 cut(s) 1373
BmgT120I GGNCC 4 cut(s) 349, 350, 1022, 1153
BmiI GGNNCC 3 cut(s) 209, 351, 1154
BmrFI CCNGG 1 cut(s) 608
BmrI ACTGGG 2 cut(s) 424, 1419
BmsI GCATC 2 cut(s) 109, 290
BmtI GCTAGC 1 cut(s) 1388
BmuI ACTGGG 2 cut(s) 424, 1419
BpiI GAAGAC 1 cut(s) 348
BpmI CTGGAG 3 cut(s) 166, 681, 851
Bpu10I CCTNAGC 1 cut(s) 123
BpuEI CTTGAG 3 cut(s) 281, 392, 401
BsaBI GATNNNNATC 1 cut(s) 636
BsaHI GRCGYC 1 cut(s) 1170
BsaJI CCNNGG 4 cut(s) 151, 252, 606, 607
BsaWI WCCGGW 1 cut(s) 1285
Bsc4I CCNNNNNNNGG 8 cut(s) 204, 719, 737, 1162, 1289, 1341, 1342, 1409
Bse1I ACTGG 5 cut(s) 430, 713, 834, 1173, 1414
Bse3DI GCAATG 1 cut(s) 237
Bse8I GATNNNNATC 1 cut(s) 636
BseBI CCWGG 1 cut(s) 608
BseDI CCNNGG 4 cut(s) 151, 252, 606, 607
BseGI GGATG 3 cut(s) 520, 805, 1269
BseJI GATNNNNATC 1 cut(s) 636
BseLI CCNNNNNNNGG 8 cut(s) 204, 719, 737, 1162, 1289, 1341, 1342, 1409
BseMI GCAATG 1 cut(s) 237
BseMII CTCAG 3 cut(s) 114, 335, 989
BseNI ACTGG 5 cut(s) 430, 713, 834, 1173, 1414
BseRI GAGGAG 1 cut(s) 1407
BseSI GKGCMC 1 cut(s) 353
BseXI GCAGC 7 cut(s) 186, 189, 279, 388, 701, 1048, 1082
BsgI GTGCAG 2 cut(s) 914, 1089
BshFI GGCC 2 cut(s) 351, 1038
BshNI GGYRCC 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 105
BsiHKCI CYCGRG 1 cut(s) 1373
BsiSI CCGG 1 cut(s) 1286
BslFI GGGAC 2 cut(s) 1166, 1181
BslI CCNNNNNNNGG 8 cut(s) 204, 719, 737, 1162, 1289, 1341, 1342, 1409
BsmAI GTCTC 5 cut(s) 779, 920, 1000, 1086, 1092
BsmFI GGGAC 2 cut(s) 1166, 1181
BsmI GAATGC 1 cut(s) 1319
BsnI GGCC 2 cut(s) 351, 1038
BsoBI CYCGRG 1 cut(s) 1373
Bsp120I GGGCCC 1 cut(s) 349
Bsp1286I GDGCHC 3 cut(s) 84, 105, 353
Bsp143I GATC 3 cut(s) 442, 1141, 1324
BspACI CCGC 5 cut(s) 817, 1073, 1270, 1336, 1349
BspANI GGCC 2 cut(s) 351, 1038
BspCNI CTCAG 3 cut(s) 115, 334, 988
BspLI GGNNCC 3 cut(s) 209, 351, 1154
BspMAI CTGCAG 2 cut(s) 176, 691
BspMI ACCTGC 1 cut(s) 256
BspOI GCTAGC 1 cut(s) 1388
BspT107I GGYRCC 1 cut(s) 207
BsrBI CCGCTC 1 cut(s) 1349
BsrDI GCAATG 1 cut(s) 237
BsrI ACTGG 5 cut(s) 430, 713, 834, 1173, 1414
BssECI CCNNGG 4 cut(s) 151, 252, 606, 607
BssMI GATC 3 cut(s) 442, 1141, 1324
BssNI GRCGYC 1 cut(s) 1170
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 608
Bst4CI ACNGT 1 cut(s) 152
Bst6I CTCTTC 2 cut(s) 7, 20
BstACI GRCGYC 1 cut(s) 1170
BstC8I GCNNGC 2 cut(s) 158, 1386
BstDEI CTNAG 4 cut(s) 123, 321, 539, 975
BstDSI CCRYGG 1 cut(s) 151
BstENI CCTNNNNNAGG 1 cut(s) 735
BstF5I GGATG 3 cut(s) 520, 805, 1269
BstKTI GATC 3 cut(s) 445, 1144, 1327
BstMAI GTCTC 5 cut(s) 779, 920, 1000, 1086, 1092
BstMBI GATC 3 cut(s) 442, 1141, 1324
BstMWI GCNNNNNNNGC 9 cut(s) 128, 183, 376, 382, 445, 698, 1067, 1070, 1394
BstNI CCWGG 1 cut(s) 608
BstNSI RCATGY 3 cut(s) 413, 599, 1068
BstSCI CCNGG 1 cut(s) 606
BstSFI CTRYAG 2 cut(s) 172, 687
BstSLI GKGCMC 1 cut(s) 353
BstV1I GCAGC 7 cut(s) 186, 189, 279, 388, 701, 1048, 1082
BstV2I GAAGAC 1 cut(s) 348
BstXI CCANNNNNNTGG 2 cut(s) 742, 1180
BsuRI GGCC 2 cut(s) 351, 1038
BtgI CCRYGG 1 cut(s) 151
BtsCI GGATG 3 cut(s) 520, 805, 1269
BtsIMutI CAGTG 3 cut(s) 827, 1180, 1407
BveI ACCTGC 1 cut(s) 256
Cac8I GCNNGC 2 cut(s) 158, 1386
Cfr13I GGNCC 4 cut(s) 349, 350, 1022, 1153
CseI GACGC 2 cut(s) 374, 1178
Csp6I GTAC 2 cut(s) 208, 658
CviAII CATG 8 cut(s) 410, 549, 563, 577, 596, 1031, 1065, 1328
CviQI GTAC 2 cut(s) 208, 658
DdeI CTNAG 4 cut(s) 123, 321, 539, 975
DpnI GATC 3 cut(s) 444, 1143, 1326
DpnII GATC 3 cut(s) 442, 1141, 1324
Eam1104I CTCTTC 2 cut(s) 7, 20
EarI CTCTTC 2 cut(s) 7, 20
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 252
Eco24I GRGCYC 3 cut(s) 84, 105, 353
Eco47I GGWCC 2 cut(s) 1022, 1153
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 2 cut(s) 44, 443
Eco88I CYCGRG 1 cut(s) 1373
EcoICRI GAGCTC 1 cut(s) 103
EcoNI CCTNNNNNAGG 1 cut(s) 735
EcoRII CCWGG 1 cut(s) 606
EcoT14I CCWWGG 1 cut(s) 252
EcoT38I GRGCYC 3 cut(s) 84, 105, 353
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 8 cut(s) 413, 552, 566, 580, 599, 1034, 1068, 1331
FaqI GGGAC 2 cut(s) 1166, 1181
FatI CATG 8 cut(s) 409, 548, 562, 576, 595, 1030, 1064, 1327
FauI CCCGC 2 cut(s) 1342, 1343
FauNDI CATATG 1 cut(s) 474
FblI GTMKAC 1 cut(s) 419
Fnu4HI GCNGC 8 cut(s) 175, 178, 268, 377, 690, 818, 1062, 1071
FokI GGATG 3 cut(s) 527, 812, 1276
FriOI GRGCYC 3 cut(s) 84, 105, 353
Fsp4HI GCNGC 8 cut(s) 175, 178, 268, 377, 690, 818, 1062, 1071
FspBI CTAG 4 cut(s) 297, 392, 1200, 1385
GluI GCNGC 8 cut(s) 175, 178, 268, 377, 690, 818, 1062, 1071
GsuI CTGGAG 3 cut(s) 166, 681, 851
HaeIII GGCC 2 cut(s) 351, 1038
HapII CCGG 1 cut(s) 1286
HgaI GACGC 2 cut(s) 374, 1178
Hin1I GRCGYC 1 cut(s) 1170
Hin1II CATG 8 cut(s) 413, 552, 566, 580, 599, 1034, 1068, 1331
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HindIII AAGCTT 2 cut(s) 93, 1090
HinfI GANTC 8 cut(s) 305, 395, 865, 881, 902, 938, 1186, 1360
HpaII CCGG 1 cut(s) 1286
HphI GGTGA 2 cut(s) 560, 1195
Hpy166II GTNNAC 3 cut(s) 241, 420, 942
Hpy188I TCNGA 5 cut(s) 324, 454, 462, 978, 1191
Hpy188III TCNNGA 5 cut(s) 275, 528, 885, 935, 1200
Hpy8I GTNNAC 3 cut(s) 241, 420, 942
HpyAV CCTTC 9 cut(s) 341, 358, 467, 864, 882, 1028, 1123, 1156, 1235
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 556
HpyF10VI GCNNNNNNNGC 9 cut(s) 128, 183, 376, 382, 445, 698, 1067, 1070, 1394
HpyF3I CTNAG 4 cut(s) 123, 321, 539, 975
HpySE526I ACGT 1 cut(s) 556
Hsp92I GRCGYC 1 cut(s) 1170
Hsp92II CATG 8 cut(s) 413, 552, 566, 580, 599, 1034, 1068, 1331
KpnI GGTACC 1 cut(s) 211
Kzo9I GATC 3 cut(s) 442, 1141, 1324
LmnI GCTCC 5 cut(s) 19, 185, 367, 1346, 1394
Lsp1109I GCAGC 7 cut(s) 186, 189, 279, 388, 701, 1048, 1082
LweI GCATC 2 cut(s) 109, 290
MaeI CTAG 4 cut(s) 297, 392, 1200, 1385
MaeII ACGT 1 cut(s) 556
MaeIII GTNAC 5 cut(s) 55, 306, 672, 757, 1330
MalI GATC 3 cut(s) 444, 1143, 1326
MbiI CCGCTC 1 cut(s) 1349
MboI GATC 3 cut(s) 442, 1141, 1324
MboII GAAGA 6 cut(s) 24, 37, 84, 133, 353, 1312
MhlI GDGCHC 3 cut(s) 84, 105, 353
MluCI AATT 3 cut(s) 519, 523, 777
MlyI GAGTC 5 cut(s) 314, 404, 874, 911, 947
MmeI TCCRAC 3 cut(s) 492, 858, 1109
MseI TTAA 7 cut(s) 86, 356, 522, 776, 852, 1305, 1423
MspA1I CMGCKG 1 cut(s) 1073
MspI CCGG 1 cut(s) 1286
MspR9I CCNGG 1 cut(s) 608
Mva1269I GAATGC 1 cut(s) 1319
MvaI CCWGG 1 cut(s) 608
MwoI GCNNNNNNNGC 9 cut(s) 128, 183, 376, 382, 445, 698, 1067, 1070, 1394
NdeI CATATG 1 cut(s) 474
NdeII GATC 3 cut(s) 442, 1141, 1324
NheI GCTAGC 1 cut(s) 1384
NlaIII CATG 8 cut(s) 413, 552, 566, 580, 599, 1034, 1068, 1331
NlaIV GGNNCC 3 cut(s) 209, 351, 1154
NmeAIII GCCGAG 1 cut(s) 1064
NmuCI GTSAC 4 cut(s) 55, 306, 672, 1330
NspI RCATGY 3 cut(s) 413, 599, 1068
PasI CCCWGGG 1 cut(s) 607
PctI GAATGC 1 cut(s) 1319
PfeI GAWTC 3 cut(s) 881, 1186, 1360
PflFI GACNNNGTC 2 cut(s) 430, 1195
PflMI CCANNNNNTGG 1 cut(s) 719
PkrI GCNGC 8 cut(s) 176, 179, 269, 378, 691, 819, 1063, 1072
PleI GAGTC 5 cut(s) 313, 403, 873, 910, 946
PpsI GAGTC 5 cut(s) 313, 403, 873, 910, 946
PshBI ATTAAT 3 cut(s) 522, 852, 1305
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 606
PspGI CCWGG 1 cut(s) 606
PspN4I GGNNCC 3 cut(s) 209, 351, 1154
PspOMI GGGCCC 1 cut(s) 349
PspPI GGNCC 4 cut(s) 349, 350, 1022, 1153
PstI CTGCAG 2 cut(s) 176, 691
PsyI GACNNNGTC 2 cut(s) 430, 1195
RsaI GTAC 2 cut(s) 209, 659
RsaNI GTAC 2 cut(s) 208, 658
SacI GAGCTC 1 cut(s) 105
SaqAI TTAA 7 cut(s) 86, 356, 522, 776, 852, 1305, 1423
SatI GCNGC 8 cut(s) 175, 178, 268, 377, 690, 818, 1062, 1071
Sau3AI GATC 3 cut(s) 442, 1141, 1324
Sau96I GGNCC 4 cut(s) 349, 350, 1022, 1153
SchI GAGTC 5 cut(s) 314, 404, 874, 911, 947
ScrFI CCNGG 1 cut(s) 608
SduI GDGCHC 3 cut(s) 84, 105, 353
SfaNI GCATC 2 cut(s) 109, 290
SfcI CTRYAG 2 cut(s) 172, 687
SinI GGWCC 2 cut(s) 1022, 1153
SmlI CTYRAG 3 cut(s) 260, 371, 380
SmoI CTYRAG 3 cut(s) 260, 371, 380
Sse9I AATT 3 cut(s) 519, 523, 777
SsiI CCGC 5 cut(s) 817, 1073, 1270, 1336, 1349
SspI AATATT 1 cut(s) 856
SspMI CTAG 4 cut(s) 297, 392, 1200, 1385
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 606
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 1 cut(s) 559
TaqI TCGA 5 cut(s) 441, 868, 884, 1311, 1323
TasI AATT 3 cut(s) 519, 523, 777
TauI GCSGC 1 cut(s) 820
TfiI GAWTC 3 cut(s) 881, 1186, 1360
Tru1I TTAA 7 cut(s) 86, 356, 522, 776, 852, 1305, 1423
Tru9I TTAA 7 cut(s) 86, 356, 522, 776, 852, 1305, 1423
TscAI CASTG 3 cut(s) 834, 1180, 1414
TseFI GTSAC 4 cut(s) 55, 306, 672, 1330
TseI GCWGC 7 cut(s) 174, 177, 267, 376, 689, 1061, 1070
Tsp45I GTSAC 4 cut(s) 55, 306, 672, 1330
TspDTI ATGAA 6 cut(s) 521, 531, 715, 1047, 1211, 1383
TspRI CASTG 3 cut(s) 834, 1180, 1414
Tth111I GACNNNGTC 2 cut(s) 430, 1195
Van91I CCANNNNNTGG 1 cut(s) 719
VpaK11BI GGWCC 2 cut(s) 1022, 1153
VspI ATTAAT 3 cut(s) 522, 852, 1305
XagI CCTNNNNNAGG 1 cut(s) 735
XbaI TCTAGA 1 cut(s) 1199
XceI RCATGY 3 cut(s) 413, 599, 1068
XmiI GTMKAC 1 cut(s) 419
XspI CTAG 4 cut(s) 297, 392, 1200, 1385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.