Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008197

Physical Location & Seq

Genomic Coordinates Reverse (-)

80915678 .. 80920697

Gene Structure 5020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG579900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGAAGTCAACGAACCTGCCAAGGAACTTGAGCAGAGCAGCTATCGTGAATACTTGAAACTGAAAACAAGATGCGAGTCTCTTCAACGAACTCAGAGAAACCTTCTTGGAGAAGACTTGGGCCCATTAAACACGAAGGAGCTTGAGCAGCTTGAGCGTCAGCTAGAGTCCTCCTTGAAGCATGTTAGGTCTACAAAGACCCAGTCTATGCTCGATCAGCTTTCTGACCTTCAGAGCAAGGAACATATGCTAATAGAAGCCAACAGAGATTTGACAATGAAGTTGGATGAAATTAATTCAGGAACTCAACTTAGACAAACATGGGAACGTGGTCATGCTCACCAGACTATGCTGTATGGAACTCAACATGCTCAAACCCAGGGTCTTATGTTCCAGCCTTTAGATTGCAATCCCACCTTGCAAATAGGGTACAACGCTGTGGGGTCACAGCAAATGACTGCAGCCACACCAGCCCCTACTCAACCAGTCAATGGTTTCATTCCTGGTTGGATGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

172

Amino Acids

19.64

Weight (kDa)

5.74

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	11 - 95	3.4e-27	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02310 AT3G02310 AT5G15800 AT5G15800
fragaria_vesca	FvH4_6g46420
malus_domestica	MD09G1073900.v1.1 MD17G1065400.v1.1
prunus_persica	Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1
pyrus_communis	pycom09g00110
rosa_chinensis	RchiOBHm_Chr2g0164951
rosa_laevigata	RLG00000021501
rosa_multiflora	Rmu_sc0001097.1_g000006
rosa_roxburghii	Rroxscaffold_2G00086170
rosa_rugosa	Rorug02G0511500 Rorug02G0511600
rosa_samantha	Rh2AG579900 Rh2BG590900 Rh2CG561600 Rh2DG601300
rosa_wichuraiana	Rw2G048130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	25
AccB7I	CCANNNNNTGG	1 cut(s)	491
AccI	GTMKAC	1 cut(s)	191
AcuI	CTGAAG	1 cut(s)	215
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	1 cut(s)	491
AgsI	TTSAA	3 cut(s)	58, 86, 178
AjnI	CCWGG	2 cut(s)	378, 502
AluBI	AGCT	5 cut(s)	42, 142, 151, 163, 220
AluI	AGCT	5 cut(s)	42, 142, 151, 163, 220
Alw26I	GTCTC	1 cut(s)	84
AoxI	GGCC	1 cut(s)	121
ApaI	GGGCCC	1 cut(s)	125
ApeKI	GCWGC	3 cut(s)	39, 148, 461
ArsI	GACNNNNNNTTYG	4 cut(s)	188, 220, 367, 399
AseI	ATTAAT	1 cut(s)	294
AspS9I	GGNCC	2 cut(s)	121, 122
AsuHPI	GGTGA	1 cut(s)	332
BaeGI	GKGCMC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	120
BbvI	GCAGC	3 cut(s)	51, 160, 473
BciT130I	CCWGG	2 cut(s)	380, 504
BcoDI	GTCTC	1 cut(s)	84
BfaI	CTAG	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	459
BfuAI	ACCTGC	1 cut(s)	25
BisI	GCNGC	3 cut(s)	40, 149, 462
BlsI	GCNGC	3 cut(s)	41, 150, 463
Bme1390I	CCNGG	2 cut(s)	380, 504
BmgT120I	GGNCC	2 cut(s)	121, 122
BmiI	GGNNCC	1 cut(s)	123
BmrFI	CCNGG	2 cut(s)	380, 504
BmrI	ACTGGG	1 cut(s)	196
BmsI	GCATC	2 cut(s)	62, 501
BmuI	ACTGGG	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	120
BpuEI	CTTGAG	3 cut(s)	50, 164, 173
BsaBI	GATNNNNATC	1 cut(s)	408
BsaJI	CCNNGG	3 cut(s)	21, 378, 379
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
Bse1I	ACTGG	2 cut(s)	202, 485
Bse8I	GATNNNNATC	1 cut(s)	408
BseBI	CCWGG	2 cut(s)	380, 504
BseDI	CCNNGG	3 cut(s)	21, 378, 379
BseGI	GGATG	2 cut(s)	292, 516
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	2 cut(s)	202, 485
BseSI	GKGCMC	1 cut(s)	125
BseXI	GCAGC	3 cut(s)	51, 160, 473
BshFI	GGCC	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	491
BsmAI	GTCTC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	123
Bsp120I	GGGCCC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	1 cut(s)	214
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	123
BspMAI	CTGCAG	1 cut(s)	463
BspMI	ACCTGC	1 cut(s)	25
BsrI	ACTGG	2 cut(s)	202, 485
BssECI	CCNNGG	3 cut(s)	21, 378, 379
BssMI	GATC	1 cut(s)	214
BssT1I	CCWWGG	1 cut(s)	21
Bst2UI	CCWGG	2 cut(s)	380, 504
Bst6I	CTCTTC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	93, 311
BstF5I	GGATG	2 cut(s)	292, 516
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 154, 217, 470
BstNI	CCWGG	2 cut(s)	380, 504
BstNSI	RCATGY	2 cut(s)	185, 371
BstSCI	CCNGG	2 cut(s)	378, 502
BstSFI	CTRYAG	1 cut(s)	459
BstSLI	GKGCMC	1 cut(s)	125
BstV1I	GCAGC	3 cut(s)	51, 160, 473
BstV2I	GAAGAC	1 cut(s)	120
BsuRI	GGCC	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	292, 516
BveI	ACCTGC	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	121, 122
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	4 cut(s)	182, 321, 335, 368
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	2 cut(s)	93, 311
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	215
EcoRII	CCWGG	2 cut(s)	378, 502
EcoT14I	CCWWGG	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	4 cut(s)	185, 324, 338, 371
FatI	CATG	4 cut(s)	181, 320, 334, 367
FauNDI	CATATG	1 cut(s)	246
FblI	GTMKAC	1 cut(s)	191
Fnu4HI	GCNGC	3 cut(s)	40, 149, 462
FokI	GGATG	1 cut(s)	299
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	3 cut(s)	40, 149, 462
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	3 cut(s)	40, 149, 462
HaeIII	GGCC	1 cut(s)	123
HgaI	GACGC	1 cut(s)	146
Hin1II	CATG	4 cut(s)	185, 324, 338, 371
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	2 cut(s)	77, 167
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	2 cut(s)	10, 192
Hpy188I	TCNGA	4 cut(s)	96, 226, 234, 518
Hpy188III	TCNNGA	2 cut(s)	47, 300
Hpy8I	GTNNAC	2 cut(s)	10, 192
HpyAV	CCTTC	3 cut(s)	113, 130, 239
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	3 cut(s)	408, 421, 461
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 154, 217, 470
HpyF3I	CTNAG	2 cut(s)	93, 311
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	4 cut(s)	185, 324, 338, 371
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	1 cut(s)	139
Lsp1109I	GCAGC	3 cut(s)	51, 160, 473
LweI	GCATC	2 cut(s)	62, 501
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	1 cut(s)	444
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	2 cut(s)	74, 125
MhlI	GDGCHC	1 cut(s)	125
MluCI	AATT	2 cut(s)	291, 295
MlyI	GAGTC	2 cut(s)	86, 176
MmeI	TCCRAC	2 cut(s)	264, 488
MnlI	CCTC	1 cut(s)	181
MseI	TTAA	2 cut(s)	128, 294
MspR9I	CCNGG	2 cut(s)	380, 504
MvaI	CCWGG	2 cut(s)	380, 504
MwoI	GCNNNNNNNGC	4 cut(s)	148, 154, 217, 470
NdeI	CATATG	1 cut(s)	246
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	4 cut(s)	185, 324, 338, 371
NlaIV	GGNNCC	1 cut(s)	123
NmuCI	GTSAC	1 cut(s)	444
NspI	RCATGY	2 cut(s)	185, 371
PasI	CCCWGGG	1 cut(s)	379
PflFI	GACNNNGTC	1 cut(s)	202
PflMI	CCANNNNNTGG	1 cut(s)	491
PkrI	GCNGC	3 cut(s)	41, 150, 463
PleI	GAGTC	2 cut(s)	85, 175
PpsI	GAGTC	2 cut(s)	85, 175
PshBI	ATTAAT	1 cut(s)	294
Psp6I	CCWGG	2 cut(s)	378, 502
PspGI	CCWGG	2 cut(s)	378, 502
PspN4I	GGNNCC	1 cut(s)	123
PspOMI	GGGCCC	1 cut(s)	121
PspPI	GGNCC	2 cut(s)	121, 122
PstI	CTGCAG	1 cut(s)	463
PsyI	GACNNNGTC	1 cut(s)	202
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
SaqAI	TTAA	2 cut(s)	128, 294
SatI	GCNGC	3 cut(s)	40, 149, 462
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	2 cut(s)	121, 122
SchI	GAGTC	2 cut(s)	86, 176
ScrFI	CCNGG	2 cut(s)	380, 504
SduI	GDGCHC	1 cut(s)	125
SfaNI	GCATC	2 cut(s)	62, 501
SfcI	CTRYAG	1 cut(s)	459
SmlI	CTYRAG	3 cut(s)	29, 143, 152
SmoI	CTYRAG	3 cut(s)	29, 143, 152
Sse9I	AATT	2 cut(s)	291, 295
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	2 cut(s)	378, 502
StyI	CCWWGG	1 cut(s)	21
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	1 cut(s)	213
TasI	AATT	2 cut(s)	291, 295
Tru1I	TTAA	2 cut(s)	128, 294
Tru9I	TTAA	2 cut(s)	128, 294
TseFI	GTSAC	1 cut(s)	444
TseI	GCWGC	3 cut(s)	39, 148, 461
Tsp45I	GTSAC	1 cut(s)	444
TspDTI	ATGAA	3 cut(s)	293, 303, 487
Tth111I	GACNNNGTC	1 cut(s)	202
Van91I	CCANNNNNTGG	1 cut(s)	491
VspI	ATTAAT	1 cut(s)	294
XceI	RCATGY	2 cut(s)	185, 371
XmiI	GTMKAC	1 cut(s)	191
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.