Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008197

Physical Location & Seq

Genomic Coordinates Forward (+)

5279373 .. 5285966

Gene Structure 6594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1065400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGGGAGAGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACATTTGCAAAGAGAAGAAATGGGCTTCTGAAGAAAGCTTATGAGCTCTCCGTTCTCTGTGATGCTGAGGTTGCTCTCATCATCTTCTCCAACCGTGGCAAGCTCTATGAGTTTTGCAGCAGCTCTAGCATTCTCAAAACACTAGACAGGTACCAAAAATGCAGTTATGGTGCAGTGGATCAAGTTAATAGACCTGCAAAGGAACTTGAGAGCAGCTATCGTGAGTACATGAAACTCAAAGGTAGATATGAGTCCCTACAACGAACTCAGAGAAACCTTCTTGGTGAGGACTTGGGTCCATTAAACACAAAGGAACTTGAGCAGCTTGAGCGTCAACTTGAGGGCTCCTTGAAGCAAGTTAGGTCCACTAAGACCCAGTATATGCTGGACCAACTTTCTGACCTTCAGAACAAGGAACAACTGTTAATAGAAGCCAACAGGGATTTGACAATGAAGTTGGATGAAATTAGTTCAAGAAATCAACTTAGACAATCATGGGAAGGTGGTGACCAGGGTATGGCATATGCAACCCAGCATCACCATGCTCAATCCCAAGGATTCTTCCAGCCTTTAGATTGCAATCCCACTTTGCAAATGGGGTACTCTGCAGTGGGGTCAGAGCAGATGAGTGCTACAACTAATGCCCAGCAAGTGAACTGTTTCATCCCTGGATGGATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

247

Amino Acids

28.26

Weight (kDa)

8.88

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.6e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	85 - 172	4.6e-27	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02310 AT3G02310 AT5G15800 AT5G15800
fragaria_vesca	FvH4_6g46420
malus_domestica	MD09G1073900.v1.1 MD17G1065400.v1.1
prunus_persica	Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1
pyrus_communis	pycom09g00110
rosa_chinensis	RchiOBHm_Chr2g0164951
rosa_laevigata	RLG00000021501
rosa_multiflora	Rmu_sc0001097.1_g000006
rosa_roxburghii	Rroxscaffold_2G00086170
rosa_rugosa	Rorug02G0511500 Rorug02G0511600
rosa_samantha	Rh2AG579900 Rh2BG590900 Rh2CG561600 Rh2DG601300
rosa_wichuraiana	Rw2G048130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	259
Acc65I	GGTACC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	207
AccB7I	CCANNNNNTGG	1 cut(s)	574
AclWI	GGATC	1 cut(s)	243
AcuI	CTGAAG	3 cut(s)	44, 107, 446
AfaI	GTAC	3 cut(s)	209, 284, 659
AfiI	CCNNNNNNNGG	1 cut(s)	574
AgsI	TTSAA	2 cut(s)	409, 531
AjnI	CCWGG	2 cut(s)	567, 724
AluBI	AGCT	7 cut(s)	22, 95, 103, 160, 180, 273, 382
AluI	AGCT	7 cut(s)	22, 95, 103, 160, 180, 273, 382
Alw21I	GWGCWC	1 cut(s)	105
AlwI	GGATC	1 cut(s)	243
ApeKI	GCWGC	4 cut(s)	174, 177, 270, 379
Asp700I	GAANNNNTTC	1 cut(s)	716
Asp718I	GGTACC	1 cut(s)	207
AspS9I	GGNCC	3 cut(s)	353, 420, 445
AsuHPI	GGTGA	3 cut(s)	353, 575, 587
AvaII	GGWCC	3 cut(s)	353, 420, 445
BanI	GGYRCC	1 cut(s)	207
BanII	GRGCYC	2 cut(s)	105, 404
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	4 cut(s)	186, 189, 282, 391
BccI	CCATC	1 cut(s)	723
BciT130I	CCWGG	2 cut(s)	569, 726
BfaI	CTAG	2 cut(s)	183, 200
BfmI	CTRYAG	1 cut(s)	663
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	4 cut(s)	175, 178, 271, 380
BlsI	GCNGC	4 cut(s)	176, 179, 272, 381
Bme1390I	CCNGG	2 cut(s)	569, 726
Bme18I	GGWCC	3 cut(s)	353, 420, 445
BmgT120I	GGNCC	3 cut(s)	353, 420, 445
BmiI	GGNNCC	3 cut(s)	209, 354, 403
BmrFI	CCNGG	2 cut(s)	569, 726
BmrI	ACTGGG	1 cut(s)	427
BmsI	GCATC	3 cut(s)	109, 601, 723
BmuI	ACTGGG	1 cut(s)	427
BoxI	GACNNNNGTC	1 cut(s)	351
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	4 cut(s)	284, 395, 404, 416
BsaBI	GATNNNNATC	1 cut(s)	636
BsaJI	CCNNGG	4 cut(s)	151, 568, 610, 724
Bsc4I	CCNNNNNNNGG	1 cut(s)	574
Bse1I	ACTGG	1 cut(s)	433
Bse8I	GATNNNNATC	1 cut(s)	636
BseBI	CCWGG	2 cut(s)	569, 726
BseDI	CCNNGG	4 cut(s)	151, 568, 610, 724
BseGI	GGATG	4 cut(s)	523, 720, 734, 738
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	1 cut(s)	574
BseMII	CTCAG	2 cut(s)	114, 338
BseNI	ACTGG	1 cut(s)	433
BseXI	GCAGC	4 cut(s)	186, 189, 282, 391
BseYI	CCCAGC	2 cut(s)	588, 702
BsgI	GTGCAG	1 cut(s)	249
BshNI	GGYRCC	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	1 cut(s)	574
BsmFI	GGGAC	1 cut(s)	295
BsmI	GAATGC	1 cut(s)	186
Bsp1286I	GDGCHC	2 cut(s)	105, 404
Bsp143I	GATC	1 cut(s)	235
BspCNI	CTCAG	2 cut(s)	115, 337
BspLI	GGNNCC	3 cut(s)	209, 354, 403
BspMAI	CTGCAG	1 cut(s)	667
BspMI	ACCTGC	1 cut(s)	259
BspPI	GGATC	1 cut(s)	243
BspT107I	GGYRCC	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	433
BssECI	CCNNGG	4 cut(s)	151, 568, 610, 724
BssMI	GATC	1 cut(s)	235
BssT1I	CCWWGG	1 cut(s)	610
Bst2UI	CCWGG	2 cut(s)	569, 726
Bst4CI	ACNGT	3 cut(s)	152, 480, 716
Bst6I	CTCTTC	2 cut(s)	7, 20
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	4 cut(s)	123, 324, 426, 542
BstDSI	CCRYGG	1 cut(s)	151
BstEII	GGTNACC	1 cut(s)	563
BstF5I	GGATG	4 cut(s)	523, 720, 734, 738
BstKTI	GATC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 183, 385
BstNI	CCWGG	2 cut(s)	569, 726
BstPAI	GACNNNNGTC	1 cut(s)	351
BstPI	GGTNACC	1 cut(s)	563
BstSCI	CCNGG	2 cut(s)	567, 724
BstSFI	CTRYAG	1 cut(s)	663
BstV1I	GCAGC	4 cut(s)	186, 189, 282, 391
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	4 cut(s)	523, 720, 734, 738
BtsI	GCAGTG	2 cut(s)	237, 672
BtsIMutI	CAGTG	2 cut(s)	237, 672
BveI	ACCTGC	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	158
Cfr13I	GGNCC	3 cut(s)	353, 420, 445
CseI	GACGC	1 cut(s)	377
Csp6I	GTAC	3 cut(s)	208, 283, 658
CviAII	CATG	3 cut(s)	286, 552, 599
CviQI	GTAC	3 cut(s)	208, 283, 658
DdeI	CTNAG	4 cut(s)	123, 324, 426, 542
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
Eam1104I	CTCTTC	2 cut(s)	7, 20
EarI	CTCTTC	2 cut(s)	7, 20
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	610
Eco24I	GRGCYC	2 cut(s)	105, 404
Eco47I	GGWCC	3 cut(s)	353, 420, 445
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	3 cut(s)	44, 107, 446
Eco91I	GGTNACC	1 cut(s)	563
EcoICRI	GAGCTC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	563
EcoRII	CCWGG	2 cut(s)	567, 724
EcoT14I	CCWWGG	1 cut(s)	610
EcoT38I	GRGCYC	2 cut(s)	105, 404
ErhI	CCWWGG	1 cut(s)	610
FaeI	CATG	3 cut(s)	289, 555, 602
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	3 cut(s)	285, 551, 598
FauNDI	CATATG	1 cut(s)	580
Fnu4HI	GCNGC	4 cut(s)	175, 178, 271, 380
FokI	GGATG	2 cut(s)	530, 707
FriOI	GRGCYC	2 cut(s)	105, 404
Fsp4HI	GCNGC	4 cut(s)	175, 178, 271, 380
FspBI	CTAG	2 cut(s)	183, 200
GluI	GCNGC	4 cut(s)	175, 178, 271, 380
GsaI	CCCAGC	2 cut(s)	592, 706
HgaI	GACGC	1 cut(s)	377
Hin1II	CATG	3 cut(s)	289, 555, 602
HincII	GTYRAC	1 cut(s)	392
HindII	GTYRAC	1 cut(s)	392
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	2 cut(s)	308, 615
HphI	GGTGA	3 cut(s)	353, 575, 587
Hpy166II	GTNNAC	3 cut(s)	392, 423, 712
Hpy188I	TCNGA	5 cut(s)	87, 327, 457, 465, 676
Hpy188III	TCNNGA	2 cut(s)	278, 531
Hpy8I	GTNNAC	3 cut(s)	392, 423, 712
HpyAV	CCTTC	3 cut(s)	344, 470, 551
HpyCH4III	ACNGT	3 cut(s)	152, 480, 716
HpyCH4V	TGCA	9 cut(s)	65, 174, 219, 230, 254, 584, 636, 649, 665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 183, 385
HpyF3I	CTNAG	4 cut(s)	123, 324, 426, 542
Hsp92II	CATG	3 cut(s)	289, 555, 602
KpnI	GGTACC	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	2 cut(s)	19, 407
Lsp1109I	GCAGC	4 cut(s)	186, 189, 282, 391
LweI	GCATC	3 cut(s)	109, 601, 723
MaeI	CTAG	2 cut(s)	183, 200
MaeIII	GTNAC	2 cut(s)	55, 563
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	6 cut(s)	24, 37, 84, 100, 133, 610
MhlI	GDGCHC	2 cut(s)	105, 404
MluCI	AATT	1 cut(s)	522
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	2 cut(s)	171, 495
MnlI	CCTC	4 cut(s)	21, 118, 337, 391
MroXI	GAANNNNTTC	1 cut(s)	716
MseI	TTAA	3 cut(s)	243, 359, 482
MslI	CAYNNNNRTG	1 cut(s)	597
MspR9I	CCNGG	2 cut(s)	569, 726
Mva1269I	GAATGC	1 cut(s)	186
MvaI	CCWGG	2 cut(s)	569, 726
MwoI	GCNNNNNNNGC	3 cut(s)	128, 183, 385
NdeI	CATATG	1 cut(s)	580
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	3 cut(s)	289, 555, 602
NlaIV	GGNNCC	3 cut(s)	209, 354, 403
NmuCI	GTSAC	2 cut(s)	55, 563
PctI	GAATGC	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	716
PfeI	GAWTC	1 cut(s)	615
PflMI	CCANNNNNTGG	1 cut(s)	574
PkrI	GCNGC	4 cut(s)	176, 179, 272, 381
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PshAI	GACNNNNGTC	1 cut(s)	351
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	2 cut(s)	567, 724
PspEI	GGTNACC	1 cut(s)	563
PspFI	CCCAGC	2 cut(s)	588, 702
PspGI	CCWGG	2 cut(s)	567, 724
PspN4I	GGNNCC	3 cut(s)	209, 354, 403
PspPI	GGNCC	3 cut(s)	353, 420, 445
PstI	CTGCAG	1 cut(s)	667
RsaI	GTAC	3 cut(s)	209, 284, 659
RsaNI	GTAC	3 cut(s)	208, 283, 658
RseI	CAYNNNNRTG	1 cut(s)	597
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	243, 359, 482
SatI	GCNGC	4 cut(s)	175, 178, 271, 380
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	3 cut(s)	353, 420, 445
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	2 cut(s)	569, 726
SduI	GDGCHC	2 cut(s)	105, 404
SfaNI	GCATC	3 cut(s)	109, 601, 723
SfcI	CTRYAG	1 cut(s)	663
SinI	GGWCC	3 cut(s)	353, 420, 445
SmiMI	CAYNNNNRTG	1 cut(s)	597
SmlI	CTYRAG	4 cut(s)	263, 374, 383, 395
SmoI	CTYRAG	4 cut(s)	263, 374, 383, 395
Sse9I	AATT	1 cut(s)	522
SspMI	CTAG	2 cut(s)	183, 200
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	567, 724
StyI	CCWWGG	1 cut(s)	610
TaaI	ACNGT	3 cut(s)	152, 480, 716
TasI	AATT	1 cut(s)	522
TatI	WGTACW	1 cut(s)	282
TfiI	GAWTC	1 cut(s)	615
Tru1I	TTAA	3 cut(s)	243, 359, 482
Tru9I	TTAA	3 cut(s)	243, 359, 482
TscAI	CASTG	2 cut(s)	237, 672
TseFI	GTSAC	2 cut(s)	55, 563
TseI	GCWGC	4 cut(s)	174, 177, 270, 379
Tsp45I	GTSAC	2 cut(s)	55, 563
TspDTI	ATGAA	4 cut(s)	302, 524, 534, 709
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	2 cut(s)	237, 672
Van91I	CCANNNNNTGG	1 cut(s)	574
VpaK11BI	GGWCC	3 cut(s)	353, 420, 445
XcmI	CCANNNNNNNNNTGG	1 cut(s)	649
XmnI	GAANNNNTTC	1 cut(s)	716
XspI	CTAG	2 cut(s)	183, 200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.