Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008197

Physical Location & Seq

Genomic Coordinates Reverse (-)

83318415 .. 83322666

Gene Structure 4252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG601300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGGGAGGGGAAGAGTGGAGCTGAAGAGAATAGAGAACAAGATAAACAGGCAAGTCACATTTGCAAAGAGAAGAAATGGGCTCTTAAAGAAAGCTTATGAGCTCTCTATTCTCTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTAACCGTGGCAAGCTCTATGAGTTCTGCAGCAGCTCCAGCATACTCAAAACCCTTGAAAGGTACCAAAAATGTAGCTATGGTGCAATGGAAGTCAACGAACCTGCCAAGGAACTTGAGCAGAGCAGCTATCGTGAATACTTGAAACTGAAAACTAGATGCGAGTCTCTTCAACGAACTCAGAGAAACCTTCTTGGAGAAGACTTGGGCCCATTAAACACGAAGGAGCTTGAGCAGCTTGAGCGTCAGCTAGAGTCCTCCTTGAAGCATGTTAGGTCTACAAAGACCCAGTATATGCTCGATCAGCTTTCTGACCTTCAGAGCAAGGAACATATGCTAATAGAAGCCAACAGAGATTTGACAATGAAGTTGGATGAAATTAATTCAGGAACTCAACTTAGACAGACATGGGAACTTGGTCATGCTCACCAGACTATGCTATATGGAACTCAACATGCTCAAACCCAGGGTCTTATGTTCCAGCCTTTAGATTGCAATCCCACCTTGCAAATAGGGTACAACGCTGTGGGGTCACAGCAAATGACTGCAGCCACACCAGCCCCTACTCAACCAGTCAATGGTTTCATTCCTGGTTGGATGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

249

Amino Acids

28.53

Weight (kDa)

8.73

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.4e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	88 - 172	2.5e-27	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02310 AT3G02310 AT5G15800 AT5G15800
fragaria_vesca	FvH4_6g46420
malus_domestica	MD09G1073900.v1.1 MD17G1065400.v1.1
prunus_persica	Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1
pyrus_communis	pycom09g00110
rosa_chinensis	RchiOBHm_Chr2g0164951
rosa_laevigata	RLG00000021501
rosa_multiflora	Rmu_sc0001097.1_g000006
rosa_roxburghii	Rroxscaffold_2G00086170
rosa_rugosa	Rorug02G0511500 Rorug02G0511600
rosa_samantha	Rh2AG579900 Rh2BG590900 Rh2CG561600 Rh2DG601300
rosa_wichuraiana	Rw2G048130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
Acc65I	GGTACC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	207
AccB7I	CCANNNNNTGG	1 cut(s)	722
AccI	GTMKAC	1 cut(s)	422
AcuI	CTGAAG	2 cut(s)	44, 446
AfaI	GTAC	2 cut(s)	209, 662
AfiI	CCNNNNNNNGG	2 cut(s)	204, 722
AgsI	TTSAA	4 cut(s)	203, 289, 317, 409
AjnI	CCWGG	2 cut(s)	609, 733
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	315
AoxI	GGCC	1 cut(s)	352
ApaI	GGGCCC	1 cut(s)	356
ApeKI	GCWGC	5 cut(s)	174, 177, 270, 379, 692
ArsI	GACNNNNNNTTYG	2 cut(s)	598, 630
AseI	ATTAAT	1 cut(s)	525
Asp718I	GGTACC	1 cut(s)	207
AspS9I	GGNCC	2 cut(s)	352, 353
AsuHPI	GGTGA	1 cut(s)	563
BaeGI	GKGCMC	1 cut(s)	356
BanI	GGYRCC	1 cut(s)	207
BanII	GRGCYC	3 cut(s)	84, 105, 356
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	5 cut(s)	186, 189, 282, 391, 704
BciT130I	CCWGG	2 cut(s)	611, 735
BcoDI	GTCTC	1 cut(s)	315
BfaI	CTAG	2 cut(s)	300, 395
BfmI	CTRYAG	2 cut(s)	172, 690
BfuAI	ACCTGC	1 cut(s)	256
BisI	GCNGC	5 cut(s)	175, 178, 271, 380, 693
BlsI	GCNGC	5 cut(s)	176, 179, 272, 381, 694
Bme1390I	CCNGG	2 cut(s)	611, 735
BmgT120I	GGNCC	2 cut(s)	352, 353
BmiI	GGNNCC	2 cut(s)	209, 354
BmrFI	CCNGG	2 cut(s)	611, 735
BmrI	ACTGGG	1 cut(s)	427
BmsI	GCATC	3 cut(s)	109, 293, 732
BmuI	ACTGGG	1 cut(s)	427
BpiI	GAAGAC	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	166
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	3 cut(s)	281, 395, 404
BsaBI	GATNNNNATC	1 cut(s)	639
BsaJI	CCNNGG	4 cut(s)	151, 252, 609, 610
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 722
Bse1I	ACTGG	2 cut(s)	433, 716
Bse3DI	GCAATG	1 cut(s)	237
Bse8I	GATNNNNATC	1 cut(s)	639
BseBI	CCWGG	2 cut(s)	611, 735
BseDI	CCNNGG	4 cut(s)	151, 252, 609, 610
BseGI	GGATG	2 cut(s)	523, 747
BseJI	GATNNNNATC	1 cut(s)	639
BseLI	CCNNNNNNNGG	2 cut(s)	204, 722
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	2 cut(s)	114, 338
BseNI	ACTGG	2 cut(s)	433, 716
BseSI	GKGCMC	1 cut(s)	356
BseXI	GCAGC	5 cut(s)	186, 189, 282, 391, 704
BshFI	GGCC	1 cut(s)	354
BshNI	GGYRCC	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	105
BslI	CCNNNNNNNGG	2 cut(s)	204, 722
BsmAI	GTCTC	1 cut(s)	315
BsnI	GGCC	1 cut(s)	354
Bsp120I	GGGCCC	1 cut(s)	352
Bsp1286I	GDGCHC	3 cut(s)	84, 105, 356
Bsp143I	GATC	1 cut(s)	445
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	2 cut(s)	115, 337
BspLI	GGNNCC	2 cut(s)	209, 354
BspMAI	CTGCAG	2 cut(s)	176, 694
BspMI	ACCTGC	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	237
BsrI	ACTGG	2 cut(s)	433, 716
BssECI	CCNNGG	4 cut(s)	151, 252, 609, 610
BssMI	GATC	1 cut(s)	445
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	2 cut(s)	611, 735
Bst4CI	ACNGT	1 cut(s)	152
Bst6I	CTCTTC	3 cut(s)	7, 20, 318
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	3 cut(s)	123, 324, 542
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	2 cut(s)	523, 747
BstKTI	GATC	1 cut(s)	448
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	1 cut(s)	445
BstMWI	GCNNNNNNNGC	6 cut(s)	128, 183, 379, 385, 448, 701
BstNI	CCWGG	2 cut(s)	611, 735
BstNSI	RCATGY	2 cut(s)	416, 602
BstSCI	CCNGG	2 cut(s)	609, 733
BstSFI	CTRYAG	2 cut(s)	172, 690
BstSLI	GKGCMC	1 cut(s)	356
BstV1I	GCAGC	5 cut(s)	186, 189, 282, 391, 704
BstV2I	GAAGAC	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	354
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	2 cut(s)	523, 747
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	352, 353
CseI	GACGC	1 cut(s)	377
Csp6I	GTAC	2 cut(s)	208, 661
CviAII	CATG	4 cut(s)	413, 552, 566, 599
CviQI	GTAC	2 cut(s)	208, 661
DdeI	CTNAG	3 cut(s)	123, 324, 542
DpnI	GATC	1 cut(s)	447
DpnII	GATC	1 cut(s)	445
Eam1104I	CTCTTC	3 cut(s)	7, 20, 318
EarI	CTCTTC	3 cut(s)	7, 20, 318
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	3 cut(s)	84, 105, 356
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	2 cut(s)	44, 446
EcoICRI	GAGCTC	1 cut(s)	103
EcoRII	CCWGG	2 cut(s)	609, 733
EcoT14I	CCWWGG	1 cut(s)	252
EcoT38I	GRGCYC	3 cut(s)	84, 105, 356
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	4 cut(s)	416, 555, 569, 602
FatI	CATG	4 cut(s)	412, 551, 565, 598
FauNDI	CATATG	1 cut(s)	477
FblI	GTMKAC	1 cut(s)	422
Fnu4HI	GCNGC	5 cut(s)	175, 178, 271, 380, 693
FokI	GGATG	1 cut(s)	530
FriOI	GRGCYC	3 cut(s)	84, 105, 356
Fsp4HI	GCNGC	5 cut(s)	175, 178, 271, 380, 693
FspBI	CTAG	2 cut(s)	300, 395
GluI	GCNGC	5 cut(s)	175, 178, 271, 380, 693
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	354
HgaI	GACGC	1 cut(s)	377
Hin1II	CATG	4 cut(s)	416, 555, 569, 602
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	2 cut(s)	308, 398
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	2 cut(s)	241, 423
Hpy188I	TCNGA	4 cut(s)	327, 457, 465, 749
Hpy188III	TCNNGA	2 cut(s)	278, 531
Hpy8I	GTNNAC	2 cut(s)	241, 423
HpyAV	CCTTC	3 cut(s)	344, 361, 470
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4V	TGCA	6 cut(s)	65, 174, 230, 639, 652, 692
HpyF10VI	GCNNNNNNNGC	6 cut(s)	128, 183, 379, 385, 448, 701
HpyF3I	CTNAG	3 cut(s)	123, 324, 542
Hsp92II	CATG	4 cut(s)	416, 555, 569, 602
KpnI	GGTACC	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	445
LmnI	GCTCC	3 cut(s)	19, 185, 370
Lsp1109I	GCAGC	5 cut(s)	186, 189, 282, 391, 704
LweI	GCATC	3 cut(s)	109, 293, 732
MaeI	CTAG	2 cut(s)	300, 395
MaeIII	GTNAC	2 cut(s)	55, 675
MalI	GATC	1 cut(s)	447
MboI	GATC	1 cut(s)	445
MboII	GAAGA	6 cut(s)	24, 37, 84, 133, 305, 356
MhlI	GDGCHC	3 cut(s)	84, 105, 356
MluCI	AATT	2 cut(s)	522, 526
MlyI	GAGTC	2 cut(s)	317, 407
MmeI	TCCRAC	2 cut(s)	495, 719
MnlI	CCTC	2 cut(s)	118, 412
MseI	TTAA	3 cut(s)	86, 359, 525
MspR9I	CCNGG	2 cut(s)	611, 735
MvaI	CCWGG	2 cut(s)	611, 735
MwoI	GCNNNNNNNGC	6 cut(s)	128, 183, 379, 385, 448, 701
NdeI	CATATG	1 cut(s)	477
NdeII	GATC	1 cut(s)	445
NlaIII	CATG	4 cut(s)	416, 555, 569, 602
NlaIV	GGNNCC	2 cut(s)	209, 354
NmuCI	GTSAC	2 cut(s)	55, 675
NspI	RCATGY	2 cut(s)	416, 602
PasI	CCCWGGG	1 cut(s)	610
PflMI	CCANNNNNTGG	1 cut(s)	722
PkrI	GCNGC	5 cut(s)	176, 179, 272, 381, 694
PleI	GAGTC	2 cut(s)	316, 406
PpsI	GAGTC	2 cut(s)	316, 406
PshBI	ATTAAT	1 cut(s)	525
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	2 cut(s)	609, 733
PspGI	CCWGG	2 cut(s)	609, 733
PspN4I	GGNNCC	2 cut(s)	209, 354
PspOMI	GGGCCC	1 cut(s)	352
PspPI	GGNCC	2 cut(s)	352, 353
PstI	CTGCAG	2 cut(s)	176, 694
RsaI	GTAC	2 cut(s)	209, 662
RsaNI	GTAC	2 cut(s)	208, 661
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	86, 359, 525
SatI	GCNGC	5 cut(s)	175, 178, 271, 380, 693
Sau3AI	GATC	1 cut(s)	445
Sau96I	GGNCC	2 cut(s)	352, 353
SchI	GAGTC	2 cut(s)	317, 407
ScrFI	CCNGG	2 cut(s)	611, 735
SduI	GDGCHC	3 cut(s)	84, 105, 356
SfaNI	GCATC	3 cut(s)	109, 293, 732
SfcI	CTRYAG	2 cut(s)	172, 690
SmlI	CTYRAG	3 cut(s)	260, 374, 383
SmoI	CTYRAG	3 cut(s)	260, 374, 383
Sse9I	AATT	2 cut(s)	522, 526
SspMI	CTAG	2 cut(s)	300, 395
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	609, 733
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	152
TaqI	TCGA	1 cut(s)	444
TasI	AATT	2 cut(s)	522, 526
Tru1I	TTAA	3 cut(s)	86, 359, 525
Tru9I	TTAA	3 cut(s)	86, 359, 525
TseFI	GTSAC	2 cut(s)	55, 675
TseI	GCWGC	5 cut(s)	174, 177, 270, 379, 692
Tsp45I	GTSAC	2 cut(s)	55, 675
TspDTI	ATGAA	3 cut(s)	524, 534, 718
Van91I	CCANNNNNTGG	1 cut(s)	722
VspI	ATTAAT	1 cut(s)	525
XceI	RCATGY	2 cut(s)	416, 602
XmiI	GTMKAC	1 cut(s)	422
XspI	CTAG	2 cut(s)	300, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.