Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008197

Physical Location & Seq

Genomic Coordinates Reverse (-)

23961851 .. 23966503

Gene Structure 4653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G249400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGGGAGGGGAAGAGTGGAACTCAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACATTTGCAAAGAGAAGAAATGGGCTTCTGAAGAAAGCCTATGAGCTCTCTATTCTCTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTAACCGTGGCAAGCTCTATGAGTTCTGTAGCAGCTCTAGCAGCATACTCAAAACACTGGAAAGGTACCAGAAGTGCAGTTATGGTCAAGTGGAAGTCAACAAACCTGCCAAGGAACTTGAGCAGAGCAGCTACCGCGAGTACTTGAAACTGAAAGGTCGATTTGAGTCCCTACAACGAACTCAGAGAAACCTTCTTGGAGAAGACTTGGGTCCCTTAAACACAAAGGAGCTTGAGCAGCTTGAGCGTCAACTGGAGTCCTCCTTGAAGCAAGTTAGGTCCACTAAGACTCAGTATATGCTGGACCAACTTTCTGACCTTCAAAATAAGGAACAAATGTTAATAGAAGCAAACAGGGATTTGTCATTGAAGTTGGATGACATTAGTTCAAGAAACCAAATTAGACAATCATGGGAAGGTGGAAACCAGGGGGGTATGGCATATGGGAGCCAGCATGCTCAATCTCAAGGGTTCTTCCAGCCCTTGGATTGCAATCCCACCTTGCAAATAGGGTACTCTAATGTGGGGTCAGAGCAGATGAGTGCCACAACTCATGCCCAACAAGTCAACGGTTTCATCCCTGGATGGATGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

247

Amino Acids

28.14

Weight (kDa)

9.08

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02310 AT3G02310 AT5G15800 AT5G15800
fragaria_vesca	FvH4_6g46420
malus_domestica	MD09G1073900.v1.1 MD17G1065400.v1.1
prunus_persica	Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1
pyrus_communis	pycom09g00110
rosa_chinensis	RchiOBHm_Chr2g0164951
rosa_laevigata	RLG00000021501
rosa_multiflora	Rmu_sc0001097.1_g000006
rosa_roxburghii	Rroxscaffold_2G00086170
rosa_rugosa	Rorug02G0511500 Rorug02G0511600
rosa_samantha	Rh2AG579900 Rh2BG590900 Rh2CG561600 Rh2DG601300
rosa_wichuraiana	Rw2G048130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	259
Acc65I	GGTACC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	210
AccB7I	CCANNNNNTGG	1 cut(s)	628
AccII	CGCG	1 cut(s)	282
AciI	CCGC	1 cut(s)	280
AcuI	CTGAAG	1 cut(s)	107
AfaI	GTAC	3 cut(s)	212, 287, 659
AfiI	CCNNNNNNNGG	1 cut(s)	628
AgsI	TTSAA	5 cut(s)	292, 412, 467, 514, 534
AjnI	CCWGG	2 cut(s)	570, 724
AluBI	AGCT	6 cut(s)	103, 160, 180, 276, 376, 385
AluI	AGCT	6 cut(s)	103, 160, 180, 276, 376, 385
Alw21I	GWGCWC	1 cut(s)	105
ApeKI	GCWGC	4 cut(s)	177, 186, 273, 382
Asp718I	GGTACC	1 cut(s)	210
AspS9I	GGNCC	3 cut(s)	356, 423, 448
AvaII	GGWCC	3 cut(s)	356, 423, 448
BanI	GGYRCC	1 cut(s)	210
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	354
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	4 cut(s)	189, 198, 285, 394
BccI	CCATC	1 cut(s)	723
BciT130I	CCWGG	2 cut(s)	572, 726
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	172
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	4 cut(s)	178, 187, 274, 383
BlsI	GCNGC	4 cut(s)	179, 188, 275, 384
BmcAI	AGTACT	1 cut(s)	287
Bme1390I	CCNGG	2 cut(s)	572, 726
Bme18I	GGWCC	3 cut(s)	356, 423, 448
BmgT120I	GGNCC	3 cut(s)	356, 423, 448
BmiI	GGNNCC	4 cut(s)	212, 357, 358, 593
BmrFI	CCNGG	2 cut(s)	572, 726
BmsI	GCATC	2 cut(s)	109, 723
BoxI	GACNNNNGTC	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	354
BplI	GAGNNNNNCTC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	419
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	5 cut(s)	8, 284, 398, 407, 594
BsaBI	GATNNNNATC	1 cut(s)	636
BsaJI	CCNNGG	5 cut(s)	151, 255, 571, 627, 724
Bsc4I	CCNNNNNNNGG	1 cut(s)	628
Bse1I	ACTGG	2 cut(s)	207, 402
Bse8I	GATNNNNATC	1 cut(s)	636
BseBI	CCWGG	2 cut(s)	572, 726
BseDI	CCNNGG	5 cut(s)	151, 255, 571, 627, 724
BseGI	GGATG	4 cut(s)	526, 720, 734, 738
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	1 cut(s)	628
BseMII	CTCAG	3 cut(s)	114, 341, 449
BseNI	ACTGG	2 cut(s)	207, 402
BseXI	GCAGC	4 cut(s)	189, 198, 285, 394
BsgI	GTGCAG	1 cut(s)	241
Bsh1236I	CGCG	1 cut(s)	282
BshNI	GGYRCC	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	105
BslFI	GGGAC	2 cut(s)	298, 342
BslI	CCNNNNNNNGG	1 cut(s)	628
BsmFI	GGGAC	2 cut(s)	298, 342
Bsp1286I	GDGCHC	1 cut(s)	105
BspACI	CCGC	1 cut(s)	280
BspCNI	CTCAG	3 cut(s)	115, 340, 448
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	4 cut(s)	212, 357, 358, 593
BspMI	ACCTGC	1 cut(s)	259
BspT107I	GGYRCC	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	207, 402
BssECI	CCNNGG	5 cut(s)	151, 255, 571, 627, 724
BssT1I	CCWWGG	2 cut(s)	255, 627
Bst2UI	CCWGG	2 cut(s)	572, 726
Bst4CI	ACNGT	2 cut(s)	152, 716
Bst6I	CTCTTC	1 cut(s)	7
BstC8I	GCNNGC	3 cut(s)	158, 596, 600
BstDEI	CTNAG	4 cut(s)	123, 327, 429, 435
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	4 cut(s)	526, 720, 734, 738
BstFNI	CGCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	6 cut(s)	128, 183, 186, 279, 382, 388
BstNI	CCWGG	2 cut(s)	572, 726
BstNSI	RCATGY	1 cut(s)	602
BstPAI	GACNNNNGTC	1 cut(s)	354
BstSCI	CCNGG	2 cut(s)	570, 724
BstSFI	CTRYAG	1 cut(s)	172
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	4 cut(s)	189, 198, 285, 394
BstV2I	GAAGAC	1 cut(s)	354
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	4 cut(s)	526, 720, 734, 738
BtsIMutI	CAGTG	1 cut(s)	200
BveI	ACCTGC	1 cut(s)	259
Cac8I	GCNNGC	3 cut(s)	158, 596, 600
Cfr13I	GGNCC	3 cut(s)	356, 423, 448
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	3 cut(s)	211, 286, 658
CviAII	CATG	3 cut(s)	555, 599, 698
CviQI	GTAC	3 cut(s)	211, 286, 658
DdeI	CTNAG	4 cut(s)	123, 327, 429, 435
Eam1104I	CTCTTC	1 cut(s)	7
EarI	CTCTTC	1 cut(s)	7
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	255, 627
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	3 cut(s)	356, 423, 448
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	107
EcoICRI	GAGCTC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	356
EcoRII	CCWGG	2 cut(s)	570, 724
EcoT14I	CCWWGG	2 cut(s)	255, 627
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	2 cut(s)	255, 627
FaeI	CATG	3 cut(s)	558, 602, 701
FaqI	GGGAC	2 cut(s)	298, 342
FatI	CATG	3 cut(s)	554, 598, 697
FauNDI	CATATG	1 cut(s)	586
Fnu4HI	GCNGC	4 cut(s)	178, 187, 274, 383
FokI	GGATG	2 cut(s)	533, 707
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	4 cut(s)	178, 187, 274, 383
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	4 cut(s)	178, 187, 274, 383
GsuI	CTGGAG	1 cut(s)	419
HgaI	GACGC	1 cut(s)	380
Hin1II	CATG	3 cut(s)	558, 602, 701
HincII	GTYRAC	3 cut(s)	244, 395, 712
HindII	GTYRAC	3 cut(s)	244, 395, 712
HinfI	GANTC	3 cut(s)	311, 401, 433
Hpy166II	GTNNAC	4 cut(s)	244, 395, 426, 712
Hpy188I	TCNGA	4 cut(s)	87, 330, 460, 676
Hpy188III	TCNNGA	2 cut(s)	25, 534
Hpy8I	GTNNAC	4 cut(s)	244, 395, 426, 712
HpyAV	CCTTC	3 cut(s)	347, 473, 554
HpyCH4III	ACNGT	2 cut(s)	152, 716
HpyCH4V	TGCA	4 cut(s)	65, 222, 636, 649
HpyF10VI	GCNNNNNNNGC	6 cut(s)	128, 183, 186, 279, 382, 388
HpyF3I	CTNAG	4 cut(s)	123, 327, 429, 435
Hsp92II	CATG	3 cut(s)	558, 602, 701
KflI	GGGWCCC	1 cut(s)	356
KpnI	GGTACC	1 cut(s)	214
LmnI	GCTCC	2 cut(s)	373, 591
Lsp1109I	GCAGC	4 cut(s)	189, 198, 285, 394
LweI	GCATC	2 cut(s)	109, 723
MaeI	CTAG	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	55
MboII	GAAGA	6 cut(s)	24, 84, 100, 133, 359, 610
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	1 cut(s)	543
MlyI	GAGTC	3 cut(s)	320, 410, 427
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	3 cut(s)	21, 118, 415
MseI	TTAA	2 cut(s)	362, 485
MspR9I	CCNGG	2 cut(s)	572, 726
MvaI	CCWGG	2 cut(s)	572, 726
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	6 cut(s)	128, 183, 186, 279, 382, 388
NdeI	CATATG	1 cut(s)	586
NlaIII	CATG	3 cut(s)	558, 602, 701
NlaIV	GGNNCC	4 cut(s)	212, 357, 358, 593
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	602
PaeI	GCATGC	1 cut(s)	602
PflMI	CCANNNNNTGG	1 cut(s)	628
PkrI	GCNGC	4 cut(s)	179, 188, 275, 384
PleI	GAGTC	3 cut(s)	319, 409, 427
PpsI	GAGTC	3 cut(s)	319, 409, 427
PpuMI	RGGWCCY	1 cut(s)	356
PshAI	GACNNNNGTC	1 cut(s)	354
Psp124BI	GAGCTC	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	356
Psp6I	CCWGG	2 cut(s)	570, 724
PspGI	CCWGG	2 cut(s)	570, 724
PspN4I	GGNNCC	4 cut(s)	212, 357, 358, 593
PspPI	GGNCC	3 cut(s)	356, 423, 448
PspPPI	RGGWCCY	1 cut(s)	356
RsaI	GTAC	3 cut(s)	212, 287, 659
RsaNI	GTAC	3 cut(s)	211, 286, 658
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	362, 485
SatI	GCNGC	4 cut(s)	178, 187, 274, 383
Sau96I	GGNCC	3 cut(s)	356, 423, 448
ScaI	AGTACT	1 cut(s)	287
SchI	GAGTC	3 cut(s)	320, 410, 427
ScrFI	CCNGG	2 cut(s)	572, 726
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	2 cut(s)	109, 723
SfcI	CTRYAG	1 cut(s)	172
SinI	GGWCC	3 cut(s)	356, 423, 448
SmlI	CTYRAG	5 cut(s)	23, 263, 377, 386, 609
SmoI	CTYRAG	5 cut(s)	23, 263, 377, 386, 609
SphI	GCATGC	1 cut(s)	602
Sse9I	AATT	1 cut(s)	543
SsiI	CCGC	1 cut(s)	280
SspMI	CTAG	1 cut(s)	183
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	570, 724
StyI	CCWWGG	2 cut(s)	255, 627
TaaI	ACNGT	2 cut(s)	152, 716
TaqI	TCGA	1 cut(s)	304
TasI	AATT	1 cut(s)	543
TatI	WGTACW	1 cut(s)	285
Tru1I	TTAA	2 cut(s)	362, 485
Tru9I	TTAA	2 cut(s)	362, 485
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	4 cut(s)	177, 186, 273, 382
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	709
TspRI	CASTG	1 cut(s)	207
Van91I	CCANNNNNTGG	1 cut(s)	628
VpaK11BI	GGWCC	3 cut(s)	356, 423, 448
XceI	RCATGY	1 cut(s)	602
XspI	CTAG	1 cut(s)	183
ZrmI	AGTACT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.