Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008197

Physical Location & Seq

Genomic Coordinates Reverse (-)

75937738 .. 75941685

Gene Structure 3948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021501

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGGGAGGGGAAGAGTGGAGCTGAAGAGAATAGAGAACAAGATAAACAGGCAAGTCACATTTGCAAAGAGAAGAAATGGGCTCTTAAAGAAAGCTTATGAGCTCTCTATTCTCTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTAACCGTGGCAAGCTGTATGAGTTCTGCAGCAGCTCCAGCATACTCAAAACCCTTGAAAGGTACCAAAAATGTAGCTATGGTGCAATGGAAGTCAACGAACCTGCCAACGAACTTGAGAGCAGCTATCGTGAATACTTGAAACTGAAAACTAGATGCGAGTCTCTTCAACGAACTCAGAGAAACCTTCTTGGAGAAGACTTGGGCCCATTAAACACAAAGGAGCTTGAGCAGCTTGAGCGTCAGCTAGAGTCCTCCTTGAAGCATGTTAGGTCTACAAAGACCCAGTATATGCTCGATCAGCTTTCTGACCTTCAGAGCAAGGAACATATGCTAATAGAAGCCAACAGAGATTTGACAATGAAGTTGGATGAACTTAATTCAGGAACTCAACTTAGACAAACATGGGAACGTGGTCATGCTCACCAGACTATGCTATATGGAACTCAACATGCTCAAACCCAGGGTCTTATGTTCCAGCCTTTAGATTGCAATCCCTCCTTGCAAATAGGGTACAACGCTGTGGGGTCACAGCAAATGACAGCAGCCACACCAGCCCCTACTCAACCAGTCAATGGTTTCATTCCCGGTTGGATGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

249

Amino Acids

28.42

Weight (kDa)

8.74

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.4e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	83 - 171	4.9e-28	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02310 AT3G02310 AT5G15800 AT5G15800
fragaria_vesca	FvH4_6g46420
malus_domestica	MD09G1073900.v1.1 MD17G1065400.v1.1
prunus_persica	Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1 Prupe.3G249400_v2.0.a1
pyrus_communis	pycom09g00110
rosa_chinensis	RchiOBHm_Chr2g0164951
rosa_laevigata	RLG00000021501
rosa_multiflora	Rmu_sc0001097.1_g000006
rosa_roxburghii	Rroxscaffold_2G00086170
rosa_rugosa	Rorug02G0511500 Rorug02G0511600
rosa_samantha	Rh2AG579900 Rh2BG590900 Rh2CG561600 Rh2DG601300
rosa_wichuraiana	Rw2G048130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
Acc65I	GGTACC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	207
AccB7I	CCANNNNNTGG	1 cut(s)	719
AccI	GTMKAC	1 cut(s)	419
AcuI	CTGAAG	2 cut(s)	44, 443
AfaI	GTAC	2 cut(s)	209, 659
AfiI	CCNNNNNNNGG	2 cut(s)	204, 719
AgsI	TTSAA	4 cut(s)	203, 286, 314, 406
AjnI	CCWGG	1 cut(s)	606
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	312
AoxI	GGCC	1 cut(s)	349
ApaI	GGGCCC	1 cut(s)	353
ApeKI	GCWGC	5 cut(s)	174, 177, 267, 376, 689
ArsI	GACNNNNNNTTYG	2 cut(s)	595, 627
Asp718I	GGTACC	1 cut(s)	207
AspS9I	GGNCC	2 cut(s)	349, 350
AsuC2I	CCSGG	1 cut(s)	732
AsuHPI	GGTGA	1 cut(s)	560
BaeGI	GKGCMC	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	207
BanII	GRGCYC	3 cut(s)	84, 105, 353
BbsI	GAAGAC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	5 cut(s)	186, 189, 279, 388, 701
BciT130I	CCWGG	1 cut(s)	608
BcnI	CCSGG	1 cut(s)	732
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	2 cut(s)	297, 392
BfmI	CTRYAG	1 cut(s)	172
BfuAI	ACCTGC	1 cut(s)	256
BisI	GCNGC	5 cut(s)	175, 178, 268, 377, 690
BlsI	GCNGC	5 cut(s)	176, 179, 269, 378, 691
Bme1390I	CCNGG	2 cut(s)	608, 732
BmgT120I	GGNCC	2 cut(s)	349, 350
BmiI	GGNNCC	2 cut(s)	209, 351
BmrFI	CCNGG	2 cut(s)	608, 732
BmrI	ACTGGG	1 cut(s)	424
BmsI	GCATC	3 cut(s)	109, 290, 729
BmuI	ACTGGG	1 cut(s)	424
BpiI	GAAGAC	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	166
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	3 cut(s)	281, 392, 401
BpuMI	CCSGG	1 cut(s)	732
BsaBI	GATNNNNATC	1 cut(s)	636
BsaJI	CCNNGG	3 cut(s)	151, 606, 607
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 719
Bse1I	ACTGG	2 cut(s)	430, 713
Bse3DI	GCAATG	1 cut(s)	237
Bse8I	GATNNNNATC	1 cut(s)	636
BseBI	CCWGG	1 cut(s)	608
BseDI	CCNNGG	3 cut(s)	151, 606, 607
BseGI	GGATG	2 cut(s)	520, 744
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	2 cut(s)	204, 719
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	2 cut(s)	114, 335
BseNI	ACTGG	2 cut(s)	430, 713
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	5 cut(s)	186, 189, 279, 388, 701
BshFI	GGCC	1 cut(s)	351
BshNI	GGYRCC	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	732
BslI	CCNNNNNNNGG	2 cut(s)	204, 719
BsmAI	GTCTC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	351
Bsp120I	GGGCCC	1 cut(s)	349
Bsp1286I	GDGCHC	3 cut(s)	84, 105, 353
Bsp143I	GATC	1 cut(s)	442
BspANI	GGCC	1 cut(s)	351
BspCNI	CTCAG	2 cut(s)	115, 334
BspLI	GGNNCC	2 cut(s)	209, 351
BspMAI	CTGCAG	1 cut(s)	176
BspMI	ACCTGC	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	237
BsrI	ACTGG	2 cut(s)	430, 713
BssECI	CCNNGG	3 cut(s)	151, 606, 607
BssMI	GATC	1 cut(s)	442
Bst2UI	CCWGG	1 cut(s)	608
Bst4CI	ACNGT	1 cut(s)	152
Bst6I	CTCTTC	3 cut(s)	7, 20, 315
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	3 cut(s)	123, 321, 539
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	2 cut(s)	520, 744
BstKTI	GATC	1 cut(s)	445
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	1 cut(s)	442
BstMWI	GCNNNNNNNGC	6 cut(s)	128, 183, 376, 382, 445, 698
BstNI	CCWGG	1 cut(s)	608
BstNSI	RCATGY	2 cut(s)	413, 599
BstSCI	CCNGG	2 cut(s)	606, 730
BstSFI	CTRYAG	1 cut(s)	172
BstSLI	GKGCMC	1 cut(s)	353
BstV1I	GCAGC	5 cut(s)	186, 189, 279, 388, 701
BstV2I	GAAGAC	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	351
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	2 cut(s)	520, 744
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	349, 350
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	2 cut(s)	208, 658
CviAII	CATG	4 cut(s)	410, 549, 563, 596
CviQI	GTAC	2 cut(s)	208, 658
DdeI	CTNAG	3 cut(s)	123, 321, 539
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
Eam1104I	CTCTTC	3 cut(s)	7, 20, 315
EarI	CTCTTC	3 cut(s)	7, 20, 315
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	3 cut(s)	84, 105, 353
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	2 cut(s)	44, 443
EcoICRI	GAGCTC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	606
EcoT38I	GRGCYC	3 cut(s)	84, 105, 353
FaeI	CATG	4 cut(s)	413, 552, 566, 599
FatI	CATG	4 cut(s)	409, 548, 562, 595
FauNDI	CATATG	1 cut(s)	474
FblI	GTMKAC	1 cut(s)	419
Fnu4HI	GCNGC	5 cut(s)	175, 178, 268, 377, 690
FokI	GGATG	1 cut(s)	527
FriOI	GRGCYC	3 cut(s)	84, 105, 353
Fsp4HI	GCNGC	5 cut(s)	175, 178, 268, 377, 690
FspBI	CTAG	2 cut(s)	297, 392
GluI	GCNGC	5 cut(s)	175, 178, 268, 377, 690
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	351
HapII	CCGG	1 cut(s)	732
HgaI	GACGC	1 cut(s)	374
Hin1II	CATG	4 cut(s)	413, 552, 566, 599
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	2 cut(s)	305, 395
HpaII	CCGG	1 cut(s)	732
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	2 cut(s)	241, 420
Hpy188I	TCNGA	4 cut(s)	324, 454, 462, 746
Hpy188III	TCNNGA	2 cut(s)	275, 528
Hpy8I	GTNNAC	2 cut(s)	241, 420
HpyAV	CCTTC	2 cut(s)	341, 467
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4IV	ACGT	1 cut(s)	556
HpyCH4V	TGCA	5 cut(s)	65, 174, 230, 636, 649
HpyF10VI	GCNNNNNNNGC	6 cut(s)	128, 183, 376, 382, 445, 698
HpyF3I	CTNAG	3 cut(s)	123, 321, 539
HpySE526I	ACGT	1 cut(s)	556
Hsp92II	CATG	4 cut(s)	413, 552, 566, 599
KpnI	GGTACC	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	442
LmnI	GCTCC	3 cut(s)	19, 185, 367
Lsp1109I	GCAGC	5 cut(s)	186, 189, 279, 388, 701
LweI	GCATC	3 cut(s)	109, 290, 729
MaeI	CTAG	2 cut(s)	297, 392
MaeII	ACGT	1 cut(s)	556
MaeIII	GTNAC	2 cut(s)	55, 672
MalI	GATC	1 cut(s)	444
MboI	GATC	1 cut(s)	442
MboII	GAAGA	6 cut(s)	24, 37, 84, 133, 302, 353
MhlI	GDGCHC	3 cut(s)	84, 105, 353
MluCI	AATT	1 cut(s)	523
MlyI	GAGTC	2 cut(s)	314, 404
MmeI	TCCRAC	2 cut(s)	492, 716
MnlI	CCTC	3 cut(s)	118, 409, 652
MseI	TTAA	3 cut(s)	86, 356, 522
MspI	CCGG	1 cut(s)	732
MspR9I	CCNGG	2 cut(s)	608, 732
MvaI	CCWGG	1 cut(s)	608
MwoI	GCNNNNNNNGC	6 cut(s)	128, 183, 376, 382, 445, 698
NciI	CCSGG	1 cut(s)	732
NdeI	CATATG	1 cut(s)	474
NdeII	GATC	1 cut(s)	442
NlaIII	CATG	4 cut(s)	413, 552, 566, 599
NlaIV	GGNNCC	2 cut(s)	209, 351
NmuCI	GTSAC	2 cut(s)	55, 672
NspI	RCATGY	2 cut(s)	413, 599
PasI	CCCWGGG	1 cut(s)	607
PflMI	CCANNNNNTGG	1 cut(s)	719
PkrI	GCNGC	5 cut(s)	176, 179, 269, 378, 691
PleI	GAGTC	2 cut(s)	313, 403
PpsI	GAGTC	2 cut(s)	313, 403
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	606
PspGI	CCWGG	1 cut(s)	606
PspN4I	GGNNCC	2 cut(s)	209, 351
PspOMI	GGGCCC	1 cut(s)	349
PspPI	GGNCC	2 cut(s)	349, 350
PstI	CTGCAG	1 cut(s)	176
RsaI	GTAC	2 cut(s)	209, 659
RsaNI	GTAC	2 cut(s)	208, 658
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	86, 356, 522
SatI	GCNGC	5 cut(s)	175, 178, 268, 377, 690
Sau3AI	GATC	1 cut(s)	442
Sau96I	GGNCC	2 cut(s)	349, 350
SchI	GAGTC	2 cut(s)	314, 404
ScrFI	CCNGG	2 cut(s)	608, 732
SduI	GDGCHC	3 cut(s)	84, 105, 353
SfaNI	GCATC	3 cut(s)	109, 290, 729
SfcI	CTRYAG	1 cut(s)	172
SmlI	CTYRAG	3 cut(s)	260, 371, 380
SmoI	CTYRAG	3 cut(s)	260, 371, 380
Sse9I	AATT	1 cut(s)	523
SspMI	CTAG	2 cut(s)	297, 392
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	606, 730
TaaI	ACNGT	1 cut(s)	152
TaiI	ACGT	1 cut(s)	559
TaqI	TCGA	1 cut(s)	441
TasI	AATT	1 cut(s)	523
Tru1I	TTAA	3 cut(s)	86, 356, 522
Tru9I	TTAA	3 cut(s)	86, 356, 522
TseFI	GTSAC	2 cut(s)	55, 672
TseI	GCWGC	5 cut(s)	174, 177, 267, 376, 689
Tsp45I	GTSAC	2 cut(s)	55, 672
TspDTI	ATGAA	3 cut(s)	521, 531, 715
Van91I	CCANNNNNTGG	1 cut(s)	719
XceI	RCATGY	2 cut(s)	413, 599
XmiI	GTMKAC	1 cut(s)	419
XspI	CTAG	2 cut(s)	297, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.