AT3G02830

zinc finger

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
613772 .. 616145
2374 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G02830.1

Sequence Viewer

Length: 1194 bp
ATGGATTTTAATGCCGGAGTTCCCATGTCTTCTCTTTCACCTTTGATGAATCAAGATGCAATGTGGCAAATGAATTTGAGTTCAGATGAAACAATGGAAACTGGTTCTTACCCTGAACGACCAGGAGAGCCTGATTGTTCTTATTACATAAGAACTGGTCTTTGTAGATTTGGCTCTACTTGTCGGTTCAACCATCCTCGTGATCGGGAACTGGTTATAGCTACTGCAAGGATGAGAGGAGAATACCCTGAAAGGATTGGTCAGCCTGAATGCGAGTACTATTTGAAGACAGGAACCTGCAAGTTTGGAGTAACATGTAAGTTTCATCATCCAAGGAACAAAGCTGGGATTGCTGGAAGAGTCTCTCTCAATATGTTAGGCTATCCTCTACGCTCGAATGAGGTTGATTGTGCTTATTTCCTAAGAACCGGACACTGTAAATTTGGTGGTACTTGTAAATTCAACCACCCTCAGCCTCAACCAACCAACATGATGGTTCCTACCTCAGGGCAACAGTCTTATCCTTGGTCAAGAGCTTCTTTTATTGCCAGCCCTCGTTGGCAAGATCCGTCTAGCTACGCTTCCTTAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGATGGAACCCTTACAGTGGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTACAGAAATTTACAGCAGAACGAGACAATAGAGTCAGGCTCTCAGTCTCAAGGATCATTCTCGGGTTACAATCCGGGATCCTCTGTTCCGCTAGGAGGGTATTATGCATTGCCGAGGGAAAATGTGTTCCCGGAGAGACCAGGACAACCCGAATGCCAATTCTACATGAAGACAGGTGACTGCAAATTTGGCACAGTTTGCAAATTTCACCATCCTAGAGACAGACAAGCTCCTCCTCCTGATTGTCTCTTAAGCTCCATTGGCCTCCCCTTACGCCCGGGAGAACCGTTGTGTGTGTTCTATACACGCTATGGAATCTGCAAATTTGGTCCAAGCTGTAAATTTGATCACCCAATGCGAGTATTCACATACGACAACACAGCTTCAGAGACAGATGAGGTAGTGGAAACATCAACAGGGAAATCTAGAAGACTCTCTGTGTCTGAAACAAGACAAGCAGCAACAACATCCTCTGGTAAAGACACTACCATTGATAATACACAGCAGTGA

Protein Analysis

397

Amino Acids

44.18

Weight (kDa)

8.09

Isoelectric Point (pI)

50.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 41 - 67 4.6e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 88 - 112 8.2e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 134 - 158 1.3e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 275 - 301 1.4e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 321 - 347 1.1e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011471)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 715
Acc36I ACCTGC 1 cut(s) 305
Acc65I GGTACC 1 cut(s) 665
AccB1I GGYRCC 1 cut(s) 665
AciI CCGC 1 cut(s) 773
AclWI GGATC 4 cut(s) 560, 745, 756, 769
AcsI RAATTY 8 cut(s) 73, 440, 458, 691, 869, 887, 1007, 1025
AcuI CTGAAG 2 cut(s) 645, 1053
AfaI GTAC 3 cut(s) 278, 451, 667
AfiI CCNNNNNNNGG 4 cut(s) 506, 617, 635, 779
AflII CTTAAG 1 cut(s) 934
AflIII ACRYGT 1 cut(s) 314
AgsI TTSAA 4 cut(s) 190, 286, 463, 617
AjnI CCWGG 2 cut(s) 121, 823
AleI CACNNNNGTG 1 cut(s) 1189
AloI GAACNNNNNNTCC 4 cut(s) 753, 785, 794, 826
AluBI AGCT 9 cut(s) 221, 344, 536, 576, 643, 914, 939, 1020, 1067
AluI AGCT 9 cut(s) 221, 344, 536, 576, 643, 914, 939, 1020, 1067
Alw26I GTCTC 7 cut(s) 367, 701, 735, 814, 897, 935, 1067
AlwI GGATC 4 cut(s) 560, 745, 756, 769
Ama87I CYCGRG 2 cut(s) 745, 961
AoxI GGCC 1 cut(s) 946
ApeKI GCWGC 1 cut(s) 1142
ApoI RAATTY 8 cut(s) 73, 440, 458, 691, 869, 887, 1007, 1025
ArsI GACNNNNNNTTYG 2 cut(s) 854, 886
Asp718I GGTACC 1 cut(s) 665
AspS9I GGNCC 1 cut(s) 1013
AsuC2I CCSGG 5 cut(s) 611, 759, 815, 962, 963
AsuHPI GGTGA 4 cut(s) 30, 872, 884, 1025
AvaI CYCGRG 2 cut(s) 745, 961
AvaII GGWCC 1 cut(s) 1013
AxyI CCTNAGG 1 cut(s) 505
BamHI GGATCC 1 cut(s) 761
BanI GGYRCC 1 cut(s) 665
BauI CACGAG 1 cut(s) 198
BbsI GAAGAC 4 cut(s) 21, 293, 860, 1120
BbvCI CCTCAGC 1 cut(s) 471
BbvI GCAGC 1 cut(s) 1154
BccI CCATC 4 cut(s) 201, 487, 615, 903
BciT130I CCWGG 2 cut(s) 123, 825
BclI TGATCA 2 cut(s) 676, 1030
BcnI CCSGG 5 cut(s) 611, 759, 815, 962, 963
BcoDI GTCTC 7 cut(s) 367, 701, 735, 814, 897, 935, 1067
BfaI CTAG 4 cut(s) 573, 776, 900, 1110
BfmI CTRYAG 1 cut(s) 685
BfrI CTTAAG 1 cut(s) 934
BfuAI ACCTGC 1 cut(s) 305
BisI GCNGC 1 cut(s) 1143
BlsI GCNGC 1 cut(s) 1144
BmcAI AGTACT 1 cut(s) 278
Bme1390I CCNGG 7 cut(s) 123, 611, 759, 815, 825, 962, 963
Bme18I GGWCC 1 cut(s) 1013
BmeT110I CYCGRG 2 cut(s) 745, 961
BmgT120I GGNCC 1 cut(s) 1013
BmiI GGNNCC 5 cut(s) 295, 498, 626, 667, 763
BmrFI CCNGG 7 cut(s) 123, 611, 759, 815, 825, 962, 963
BmsI GCATC 1 cut(s) 46
BpiI GAAGAC 4 cut(s) 21, 293, 860, 1120
BplI GAGNNNNNCTC 4 cut(s) 351, 383, 707, 739
Bpu10I CCTNAGC 1 cut(s) 471
BpuEI CTTGAG 2 cut(s) 582, 717
BpuMI CCSGG 5 cut(s) 611, 759, 815, 962, 963
BsaI GGTCTC 1 cut(s) 814
BsaJI CCNNGG 4 cut(s) 332, 524, 797, 961
BsaWI WCCGGW 2 cut(s) 428, 668
Bsc4I CCNNNNNNNGG 4 cut(s) 506, 617, 635, 779
Bse1I ACTGG 3 cut(s) 106, 160, 216
Bse21I CCTNAGG 1 cut(s) 505
Bse3DI GCAATG 2 cut(s) 66, 791
BseBI CCWGG 2 cut(s) 123, 825
BseDI CCNNGG 4 cut(s) 332, 524, 797, 961
BseGI GGATG 6 cut(s) 193, 237, 328, 626, 895, 1151
BseLI CCNNNNNNNGG 4 cut(s) 506, 617, 635, 779
BseMI GCAATG 2 cut(s) 66, 791
BseMII CTCAG 4 cut(s) 485, 519, 663, 740
BseNI ACTGG 3 cut(s) 106, 160, 216
BseRI GAGGAG 3 cut(s) 252, 906, 909
BseXI GCAGC 1 cut(s) 1154
BseYI CCCAGC 1 cut(s) 344
BshFI GGCC 1 cut(s) 948
BshNI GGYRCC 1 cut(s) 665
BsiHKCI CYCGRG 2 cut(s) 745, 961
BsiSI CCGG 7 cut(s) 15, 429, 611, 669, 758, 815, 962
BslFI GGGAC 1 cut(s) 593
BslI CCNNNNNNNGG 4 cut(s) 506, 617, 635, 779
BsmAI GTCTC 7 cut(s) 367, 701, 735, 814, 897, 935, 1067
BsmFI GGGAC 1 cut(s) 593
BsmI GAATGC 2 cut(s) 275, 842
BsnI GGCC 1 cut(s) 948
Bso31I GGTCTC 1 cut(s) 814
BsoBI CYCGRG 2 cut(s) 745, 961
Bsp143I GATC 6 cut(s) 202, 565, 676, 737, 761, 1030
BspACI CCGC 1 cut(s) 773
BspANI GGCC 1 cut(s) 948
BspCNI CTCAG 4 cut(s) 484, 518, 662, 739
BspLI GGNNCC 5 cut(s) 295, 498, 626, 667, 763
BspMI ACCTGC 1 cut(s) 305
BspPI GGATC 4 cut(s) 560, 745, 756, 769
BspT107I GGYRCC 1 cut(s) 665
BspTI CTTAAG 1 cut(s) 934
BspTNI GGTCTC 1 cut(s) 814
BsrDI GCAATG 2 cut(s) 66, 791
BsrI ACTGG 3 cut(s) 106, 160, 216
BssECI CCNNGG 4 cut(s) 332, 524, 797, 961
BssMI GATC 6 cut(s) 202, 565, 676, 737, 761, 1030
BssSI CACGAG 1 cut(s) 198
BssT1I CCWWGG 2 cut(s) 332, 524
Bst2BI CACGAG 1 cut(s) 198
Bst2UI CCWGG 2 cut(s) 123, 825
Bst4CI ACNGT 5 cut(s) 437, 516, 635, 880, 972
Bst6I CTCTTC 1 cut(s) 352
BstAFI CTTAAG 1 cut(s) 934
BstAPI GCANNNNNTGC 1 cut(s) 882
BstC8I GCNNGC 1 cut(s) 550
BstDEI CTNAG 5 cut(s) 422, 471, 505, 649, 726
BstENI CCTNNNNNAGG 1 cut(s) 504
BstF5I GGATG 6 cut(s) 193, 237, 328, 626, 895, 1151
BstKTI GATC 6 cut(s) 205, 568, 679, 740, 764, 1033
BstMAI GTCTC 7 cut(s) 367, 701, 735, 814, 897, 935, 1067
BstMBI GATC 6 cut(s) 202, 565, 676, 737, 761, 1030
BstMWI GCNNNNNNNGC 4 cut(s) 350, 873, 882, 945
BstNI CCWGG 2 cut(s) 123, 825
BstNSI RCATGY 1 cut(s) 318
BstSCI CCNGG 7 cut(s) 121, 609, 757, 813, 823, 960, 961
BstSFI CTRYAG 1 cut(s) 685
BstV1I GCAGC 1 cut(s) 1154
BstV2I GAAGAC 4 cut(s) 21, 293, 860, 1120
BstX2I RGATCY 2 cut(s) 565, 761
BstXI CCANNNNNNTGG 1 cut(s) 493
BstYI RGATCY 2 cut(s) 565, 761
Bsu36I CCTNAGG 1 cut(s) 505
BsuRI GGCC 1 cut(s) 948
BtsCI GGATG 6 cut(s) 193, 237, 328, 626, 895, 1151
BtsIMutI CAGTG 2 cut(s) 433, 640
BveI ACCTGC 1 cut(s) 305
Cac8I GCNNGC 1 cut(s) 550
Cfr13I GGNCC 1 cut(s) 1013
Cfr9I CCCGGG 1 cut(s) 961
Csp6I GTAC 3 cut(s) 277, 450, 666
CviAII CATG 5 cut(s) 25, 315, 490, 592, 850
CviQI GTAC 3 cut(s) 277, 450, 666
DdeI CTNAG 5 cut(s) 422, 471, 505, 649, 726
DpnI GATC 6 cut(s) 204, 567, 678, 739, 763, 1032
DpnII GATC 6 cut(s) 202, 565, 676, 737, 761, 1030
DrdI GACNNNNNNGTC 1 cut(s) 715
DseDI GACNNNNNNGTC 1 cut(s) 715
Eam1104I CTCTTC 1 cut(s) 352
EarI CTCTTC 1 cut(s) 352
Eco130I CCWWGG 2 cut(s) 332, 524
Eco31I GGTCTC 1 cut(s) 814
Eco47I GGWCC 1 cut(s) 1013
Eco57I CTGAAG 2 cut(s) 645, 1053
Eco81I CCTNAGG 1 cut(s) 505
Eco88I CYCGRG 2 cut(s) 745, 961
EcoNI CCTNNNNNAGG 1 cut(s) 504
EcoRII CCWGG 2 cut(s) 121, 823
EcoT14I CCWWGG 2 cut(s) 332, 524
EcoT22I ATGCAT 1 cut(s) 793
ErhI CCWWGG 2 cut(s) 332, 524
FaeI CATG 5 cut(s) 28, 318, 493, 595, 853
FalI AAGNNNNNCTT 2 cut(s) 523, 555
FaqI GGGAC 1 cut(s) 593
FatI CATG 5 cut(s) 24, 314, 489, 591, 849
FbaI TGATCA 2 cut(s) 676, 1030
Fnu4HI GCNGC 1 cut(s) 1143
FokI GGATG 6 cut(s) 180, 244, 315, 633, 882, 1138
Fsp4HI GCNGC 1 cut(s) 1143
FspBI CTAG 4 cut(s) 573, 776, 900, 1110
GluI GCNGC 1 cut(s) 1143
GsaI CCCAGC 1 cut(s) 348
HaeIII GGCC 1 cut(s) 948
HapII CCGG 7 cut(s) 15, 429, 611, 669, 758, 815, 962
Hin1II CATG 5 cut(s) 28, 318, 493, 595, 853
HinfI GANTC 5 cut(s) 49, 360, 716, 999, 1116
HpaII CCGG 7 cut(s) 15, 429, 611, 669, 758, 815, 962
HphI GGTGA 4 cut(s) 30, 872, 884, 1025
Hpy188I TCNGA 3 cut(s) 85, 1072, 1129
Hpy188III TCNNGA 6 cut(s) 53, 200, 206, 531, 923, 1110
HpyAV CCTTC 1 cut(s) 669
HpyCH4III ACNGT 5 cut(s) 437, 516, 635, 880, 972
HpyCH4V TGCA 7 cut(s) 59, 227, 300, 791, 867, 885, 1005
HpyF10VI GCNNNNNNNGC 4 cut(s) 350, 873, 882, 945
HpyF3I CTNAG 5 cut(s) 422, 471, 505, 649, 726
Hsp92II CATG 5 cut(s) 28, 318, 493, 595, 853
KpnI GGTACC 1 cut(s) 669
Ksp22I TGATCA 2 cut(s) 676, 1030
Kzo9I GATC 6 cut(s) 202, 565, 676, 737, 761, 1030
LmnI GCTCC 2 cut(s) 919, 944
Lsp1109I GCAGC 1 cut(s) 1154
LweI GCATC 1 cut(s) 46
MaeI CTAG 4 cut(s) 573, 776, 900, 1110
MaeIII GTNAC 3 cut(s) 310, 749, 860
MalI GATC 6 cut(s) 204, 567, 678, 739, 763, 1032
MboI GATC 6 cut(s) 202, 565, 676, 737, 761, 1030
MboII GAAGA 5 cut(s) 21, 298, 369, 865, 1125
MflI RGATCY 2 cut(s) 565, 761
MluCI AATT 9 cut(s) 73, 440, 458, 691, 842, 869, 887, 1007, 1025
MlyI GAGTC 3 cut(s) 369, 725, 1110
Mph1103I ATGCAT 1 cut(s) 793
MseI TTAA 3 cut(s) 9, 587, 935
MslI CAYNNNNRTG 2 cut(s) 198, 1189
MspCI CTTAAG 1 cut(s) 934
MspI CCGG 7 cut(s) 15, 429, 611, 669, 758, 815, 962
MspR9I CCNGG 7 cut(s) 123, 611, 759, 815, 825, 962, 963
Mva1269I GAATGC 2 cut(s) 275, 842
MvaI CCWGG 2 cut(s) 123, 825
MwoI GCNNNNNNNGC 4 cut(s) 350, 873, 882, 945
NciI CCSGG 5 cut(s) 611, 759, 815, 962, 963
NdeII GATC 6 cut(s) 202, 565, 676, 737, 761, 1030
NlaIII CATG 5 cut(s) 28, 318, 493, 595, 853
NlaIV GGNNCC 5 cut(s) 295, 498, 626, 667, 763
NmeAIII GCCGAG 2 cut(s) 624, 822
NmuCI GTSAC 1 cut(s) 860
NsiI ATGCAT 1 cut(s) 793
NspI RCATGY 1 cut(s) 318
OliI CACNNNNGTG 1 cut(s) 1189
PciI ACATGT 1 cut(s) 314
PctI GAATGC 2 cut(s) 275, 842
PfeI GAWTC 2 cut(s) 49, 999
PfoI TCCNGGA 2 cut(s) 757, 813
PkrI GCNGC 1 cut(s) 1144
PleI GAGTC 3 cut(s) 368, 724, 1110
PpsI GAGTC 3 cut(s) 368, 724, 1110
PscI ACATGT 1 cut(s) 314
Psp6I CCWGG 2 cut(s) 121, 823
PspFI CCCAGC 1 cut(s) 344
PspGI CCWGG 2 cut(s) 121, 823
PspN4I GGNNCC 5 cut(s) 295, 498, 626, 667, 763
PspPI GGNCC 1 cut(s) 1013
PsuI RGATCY 2 cut(s) 565, 761
RsaI GTAC 3 cut(s) 278, 451, 667
RsaNI GTAC 3 cut(s) 277, 450, 666
RseI CAYNNNNRTG 2 cut(s) 198, 1189
SaqAI TTAA 3 cut(s) 9, 587, 935
SatI GCNGC 1 cut(s) 1143
Sau3AI GATC 6 cut(s) 202, 565, 676, 737, 761, 1030
Sau96I GGNCC 1 cut(s) 1013
ScaI AGTACT 1 cut(s) 278
SchI GAGTC 3 cut(s) 369, 725, 1110
ScrFI CCNGG 7 cut(s) 123, 611, 759, 815, 825, 962, 963
SfaNI GCATC 1 cut(s) 46
SfcI CTRYAG 1 cut(s) 685
SinI GGWCC 1 cut(s) 1013
SmaI CCCGGG 1 cut(s) 963
SmiMI CAYNNNNRTG 2 cut(s) 198, 1189
SmlI CTYRAG 3 cut(s) 597, 732, 934
SmoI CTYRAG 3 cut(s) 597, 732, 934
Sse9I AATT 9 cut(s) 73, 440, 458, 691, 842, 869, 887, 1007, 1025
SsiI CCGC 1 cut(s) 773
SspMI CTAG 4 cut(s) 573, 776, 900, 1110
StyD4I CCNGG 7 cut(s) 121, 609, 757, 813, 823, 960, 961
StyI CCWWGG 2 cut(s) 332, 524
TaaI ACNGT 5 cut(s) 437, 516, 635, 880, 972
TaqI TCGA 1 cut(s) 395
TasI AATT 9 cut(s) 73, 440, 458, 691, 842, 869, 887, 1007, 1025
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 2 cut(s) 49, 999
Tru1I TTAA 3 cut(s) 9, 587, 935
Tru9I TTAA 3 cut(s) 9, 587, 935
TscAI CASTG 2 cut(s) 440, 640
TseFI GTSAC 1 cut(s) 860
TseI GCWGC 1 cut(s) 1142
Tsp45I GTSAC 1 cut(s) 860
TspDTI ATGAA 5 cut(s) 62, 86, 102, 314, 866
TspGWI ACGGA 1 cut(s) 558
TspMI CCCGGG 1 cut(s) 961
TspRI CASTG 2 cut(s) 440, 640
Vha464I CTTAAG 1 cut(s) 934
VpaK11BI GGWCC 1 cut(s) 1013
XagI CCTNNNNNAGG 1 cut(s) 504
XapI RAATTY 8 cut(s) 73, 440, 458, 691, 869, 887, 1007, 1025
XbaI TCTAGA 1 cut(s) 1109
XceI RCATGY 1 cut(s) 318
XmaI CCCGGG 1 cut(s) 961
XspI CTAG 4 cut(s) 573, 776, 900, 1110
ZrmI AGTACT 1 cut(s) 278
Zsp2I ATGCAT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.