Prupe.6G360600_v2.0.a1

Zinc finger CCCH domain-containing protein ZFN-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
30427980 .. 30431581
3602 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G360600.1

Sequence Viewer

Length: 1329 bp
ATGGACTTCGATGCCGGAATTCCCATGTCTCGTGCTGCCGCGCCCGTGACCGACGCTCCGTCACTGTCACCCTCCTTGACCCAAGATGCAATGTGGCAAATGAATTTGAGATCAAGTGAAACACTGGAACCTGGGTCCTATCCCGAGCGTACCGGAGAGCCAGATTGTTCTTATTACATCAGAACAGGCCTTTGTAGATTTGGAGCAACATGTCGCTTTAATCATCCTCCTAACCGGAAGCTGGCTATTGCCACTGCAAGGATGAAGGGAGAGTTCCCAGAAAGAATTGGACAACCTGAATGTCAGTACTACCTGAAGACAGGAACTTGCAAGTTTGGAGCAACATGCAAGTTTCATCATCCTAGAGACAAAGCAGGAATTGCTGGAAGAGTTGCCTTAAATATCTTGGGCTATCCACTTCGACCGAATGAGATTGAATGTGCTTATTATTTACGAACTGGACAATGCAAGTTCGGAAGCACTTGTAAATACCACCATCCACAACCTACTAATATGATGGTTTCATTGCGTGGCTCTCCTGTATATCCTACTGTCCAATCTCCAACTACTCCTGGTCAGCAGTCGTATGCGGGAGGAATTACAAATTGGTCAAGAGCATCTTTTATTCCCAGTCCACGCTGGCAAGCTCCATCAAGTTACGCTCCTCTTATTGTTCCTCAGGGAGTGGTATCAGTCCCAGGTTGGAGCGCATACAGTGGCCAGATTGGCTCCGTTTCATCTCCAGAGAGCCAACAGCAACCAGTGGGAAACAGTCAAATCTATGGAACTTCACGCCAAGGTGAACCGGAAAATTCAGGTTCTCAAGGGACCTTTTCTTCATATCGTTCTGGCTCCATACCTGTGGGGTTTTATGCATTGCAGAGGGAAAATGTATTTCCTGAAAGACCTGGCCAGCCTGAGTGCCAGTTTTACATGAAGACAGGCGATTGTAAGTTTGGTGCAGTTTGCAGGTTCCATCATCCTAGGGAGAGATTAATTCCTGCTCCAGACTGTGTTTTGAGTCCAATAGGCCTTCCTTTACGGCCGGGAGAACCTTTATGCATCTTTTATTCTCGTTATGGTATCTGTAAGTTCGGTCCGAGTTGCAAGTTTGACCACCCTATGGGTATCTTCACATATAATCCCAATGCATCATCTTCGGCTGATGCCCCAGCCCGGCGTTTGTTGGGTTCAACGTCAGCGACCACTTCATTAAATTTATCACCAGAAGGATTAGTTGAAGCAGGATCAGCAAATCCCAGGAGACTTTCACTGTCAGAACCTAGGCAGATACCTTCTGGAGATGATAATATTGACACAGAGGACTGA

Protein Analysis

443

Amino Acids

48.22

Weight (kDa)

8.62

Isoelectric Point (pI)

62.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011471)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 960
AccB7I CCANNNNNTGG 1 cut(s) 1123
AccII CGCG 1 cut(s) 41
AciI CCGC 2 cut(s) 39, 590
AclWI GGATC 1 cut(s) 1255
AcoI YGGCCR 3 cut(s) 718, 910, 1043
AcsI RAATTY 4 cut(s) 18, 103, 811, 1216
AcuI CTGAAG 1 cut(s) 335
AfaI GTAC 2 cut(s) 151, 308
AfiI CCNNNNNNNGG 4 cut(s) 241, 258, 1123, 1176
AflIII ACRYGT 1 cut(s) 209
AgsI TTSAA 3 cut(s) 437, 1194, 1241
AhdI GACNNNNNGTC 1 cut(s) 58
AjnI CCWGG 5 cut(s) 130, 571, 697, 907, 1259
AjuI GAANNNNNNNTTGG 2 cut(s) 589, 621
AluBI AGCT 2 cut(s) 241, 647
AluI AGCT 2 cut(s) 241, 647
Alw26I GTCTC 3 cut(s) 33, 360, 1258
AlwI GGATC 1 cut(s) 1255
Ama87I CYCGRG 1 cut(s) 143
AoxI GGCC 5 cut(s) 187, 718, 910, 1030, 1043
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 4 cut(s) 18, 103, 811, 1216
AseI ATTAAT 1 cut(s) 995
AspA2I CCTAGG 2 cut(s) 983, 1283
AspLEI GCGC 2 cut(s) 43, 710
AspS9I GGNCC 3 cut(s) 135, 828, 1097
AsuC2I CCSGG 2 cut(s) 1047, 1177
AsuHPI GGTGA 3 cut(s) 60, 812, 1215
AvaI CYCGRG 1 cut(s) 143
AvaII GGWCC 3 cut(s) 135, 828, 1097
AvrII CCTAGG 2 cut(s) 983, 1283
AxyI CCTNAGG 1 cut(s) 678
BalI TGGCCA 2 cut(s) 720, 912
BauI CACGAG 1 cut(s) 30
BbsI GAAGAC 2 cut(s) 323, 944
BbvI GCAGC 1 cut(s) 22
BccI CCATC 4 cut(s) 504, 511, 658, 984
BceAI ACGGC 1 cut(s) 1058
BcgI CGANNNNNNTGC 2 cut(s) 1140, 1174
BciT130I CCWGG 5 cut(s) 132, 573, 699, 909, 1261
BcnI CCSGG 2 cut(s) 1047, 1177
BcoDI GTCTC 3 cut(s) 33, 360, 1258
BfaI CTAG 3 cut(s) 363, 984, 1284
BfuAI ACCTGC 1 cut(s) 960
BglI GCCNNNNNGGC 1 cut(s) 726
BisI GCNGC 2 cut(s) 36, 39
BlnI CCTAGG 2 cut(s) 983, 1283
BlsI GCNGC 2 cut(s) 37, 40
BmcAI AGTACT 1 cut(s) 308
Bme1390I CCNGG 7 cut(s) 132, 573, 699, 909, 1047, 1177, 1261
Bme18I GGWCC 3 cut(s) 135, 828, 1097
BmeRI GACNNNNNGTC 1 cut(s) 58
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 3 cut(s) 135, 828, 1097
BmiI GGNNCC 6 cut(s) 129, 136, 730, 829, 853, 974
BmrFI CCNGG 7 cut(s) 132, 573, 699, 909, 1047, 1177, 1261
BmrI ACTGGG 1 cut(s) 624
BmsI GCATC 5 cut(s) 76, 626, 1071, 1156, 1160
BmuI ACTGGG 1 cut(s) 624
BpiI GAAGAC 2 cut(s) 323, 944
BpmI CTGGAG 3 cut(s) 726, 990, 1320
BpuEI CTTGAG 1 cut(s) 807
BpuMI CCSGG 2 cut(s) 1047, 1177
BsaJI CCNNGG 6 cut(s) 131, 697, 796, 983, 1259, 1283
BsaWI WCCGGW 3 cut(s) 152, 234, 805
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bsc4I CCNNNNNNNGG 4 cut(s) 241, 258, 1123, 1176
Bse1I ACTGG 5 cut(s) 129, 463, 630, 761, 925
Bse21I CCTNAGG 1 cut(s) 678
Bse3DI GCAATG 3 cut(s) 96, 524, 875
BseBI CCWGG 5 cut(s) 132, 573, 699, 909, 1261
BseDI CCNNGG 6 cut(s) 131, 697, 796, 983, 1259, 1283
BseGI GGATG 5 cut(s) 223, 267, 358, 496, 979
BseLI CCNNNNNNNGG 4 cut(s) 241, 258, 1123, 1176
BseMI GCAATG 3 cut(s) 96, 524, 875
BseMII CTCAG 2 cut(s) 692, 909
BseNI ACTGG 5 cut(s) 129, 463, 630, 761, 925
BseRI GAGGAG 1 cut(s) 654
BseX3I CGGCCG 1 cut(s) 1043
BseXI GCAGC 1 cut(s) 22
BseYI CCCAGC 1 cut(s) 1171
BsgI GTGCAG 1 cut(s) 981
Bsh1236I CGCG 1 cut(s) 41
Bsh1285I CGRYCG 2 cut(s) 425, 1046
BshFI GGCC 5 cut(s) 189, 720, 912, 1032, 1045
BsiEI CGRYCG 2 cut(s) 425, 1046
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 6 cut(s) 15, 153, 235, 806, 1046, 1177
BslFI GGGAC 2 cut(s) 680, 841
BslI CCNNNNNNNGG 4 cut(s) 241, 258, 1123, 1176
BsmAI GTCTC 3 cut(s) 33, 360, 1258
BsmFI GGGAC 2 cut(s) 680, 841
BsnI GGCC 5 cut(s) 189, 720, 912, 1032, 1045
BsoBI CYCGRG 1 cut(s) 143
Bsp143I GATC 2 cut(s) 110, 1247
BspACI CCGC 2 cut(s) 39, 590
BspANI GGCC 5 cut(s) 189, 720, 912, 1032, 1045
BspCNI CTCAG 2 cut(s) 691, 910
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 6 cut(s) 129, 136, 730, 829, 853, 974
BspMI ACCTGC 1 cut(s) 960
BspPI GGATC 1 cut(s) 1255
BsrDI GCAATG 3 cut(s) 96, 524, 875
BsrI ACTGG 5 cut(s) 129, 463, 630, 761, 925
BssECI CCNNGG 6 cut(s) 131, 697, 796, 983, 1259, 1283
BssMI GATC 2 cut(s) 110, 1247
BssSI CACGAG 1 cut(s) 30
BssT1I CCWWGG 3 cut(s) 796, 983, 1283
Bst2BI CACGAG 1 cut(s) 30
Bst2UI CCWGG 5 cut(s) 132, 573, 699, 909, 1261
Bst4CI ACNGT 6 cut(s) 66, 553, 716, 773, 1013, 1275
Bst6I CTCTTC 1 cut(s) 382
BstAPI GCANNNNNTGC 1 cut(s) 380
BstC8I GCNNGC 4 cut(s) 243, 641, 645, 914
BstDEI CTNAG 2 cut(s) 678, 918
BstF5I GGATG 5 cut(s) 223, 267, 358, 496, 979
BstFNI CGCG 1 cut(s) 41
BstHHI GCGC 2 cut(s) 43, 710
BstKTI GATC 2 cut(s) 113, 1250
BstMAI GTCTC 3 cut(s) 33, 360, 1258
BstMBI GATC 2 cut(s) 110, 1247
BstMCI CGRYCG 2 cut(s) 425, 1046
BstMWI GCNNNNNNNGC 3 cut(s) 380, 726, 1250
BstNI CCWGG 5 cut(s) 132, 573, 699, 909, 1261
BstNSI RCATGY 2 cut(s) 213, 348
BstSCI CCNGG 7 cut(s) 130, 571, 697, 907, 1045, 1175, 1259
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 22
BstV2I GAAGAC 2 cut(s) 323, 944
BstXI CCANNNNNNTGG 1 cut(s) 862
BstZI CGGCCG 1 cut(s) 1043
Bsu36I CCTNAGG 1 cut(s) 678
BsuRI GGCC 5 cut(s) 189, 720, 912, 1032, 1045
BtsCI GGATG 5 cut(s) 223, 267, 358, 496, 979
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 6 cut(s) 62, 122, 252, 721, 768, 1271
BveI ACCTGC 1 cut(s) 960
Cac8I GCNNGC 4 cut(s) 243, 641, 645, 914
CfoI GCGC 2 cut(s) 43, 710
Cfr13I GGNCC 3 cut(s) 135, 828, 1097
CpoI CGGWCCG 1 cut(s) 1097
CseI GACGC 1 cut(s) 62
Csp6I GTAC 2 cut(s) 150, 307
CspI CGGWCCG 1 cut(s) 1097
CviAII CATG 4 cut(s) 25, 210, 345, 934
CviQI GTAC 2 cut(s) 150, 307
DdeI CTNAG 2 cut(s) 678, 918
DpnI GATC 2 cut(s) 112, 1249
DpnII GATC 2 cut(s) 110, 1247
DriI GACNNNNNGTC 1 cut(s) 58
EaeI YGGCCR 3 cut(s) 718, 910, 1043
EagI CGGCCG 1 cut(s) 1043
Eam1104I CTCTTC 1 cut(s) 382
Eam1105I GACNNNNNGTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 382
EclXI CGGCCG 1 cut(s) 1043
Eco130I CCWWGG 3 cut(s) 796, 983, 1283
Eco147I AGGCCT 2 cut(s) 189, 1032
Eco47I GGWCC 3 cut(s) 135, 828, 1097
Eco52I CGGCCG 1 cut(s) 1043
Eco57I CTGAAG 1 cut(s) 335
Eco81I CCTNAGG 1 cut(s) 678
Eco88I CYCGRG 1 cut(s) 143
EcoO109I RGGNCCY 2 cut(s) 135, 828
EcoRI GAATTC 1 cut(s) 18
EcoRII CCWGG 5 cut(s) 130, 571, 697, 907, 1259
EcoT14I CCWWGG 3 cut(s) 796, 983, 1283
EcoT22I ATGCAT 3 cut(s) 877, 1064, 1153
ErhI CCWWGG 3 cut(s) 796, 983, 1283
FaeI CATG 4 cut(s) 28, 213, 348, 937
FalI AAGNNNNNCTT 2 cut(s) 604, 636
FaqI GGGAC 2 cut(s) 680, 841
FatI CATG 4 cut(s) 24, 209, 344, 933
FauI CCCGC 1 cut(s) 583
Fnu4HI GCNGC 2 cut(s) 36, 39
FokI GGATG 5 cut(s) 210, 274, 345, 483, 966
Fsp4HI GCNGC 2 cut(s) 36, 39
FspBI CTAG 3 cut(s) 363, 984, 1284
GlaI GCGC 2 cut(s) 42, 709
GluI GCNGC 2 cut(s) 36, 39
GsaI CCCAGC 1 cut(s) 1175
GsuI CTGGAG 3 cut(s) 726, 990, 1320
HaeIII GGCC 5 cut(s) 189, 720, 912, 1032, 1045
HapII CCGG 6 cut(s) 15, 153, 235, 806, 1046, 1177
HgaI GACGC 1 cut(s) 62
HhaI GCGC 2 cut(s) 43, 710
Hin1II CATG 4 cut(s) 28, 213, 348, 937
Hin6I GCGC 2 cut(s) 41, 708
HinP1I GCGC 2 cut(s) 41, 708
HinfI GANTC 1 cut(s) 1021
HpaII CCGG 6 cut(s) 15, 153, 235, 806, 1046, 1177
HphI GGTGA 3 cut(s) 60, 812, 1215
Hpy166II GTNNAC 2 cut(s) 635, 803
Hpy188I TCNGA 4 cut(s) 182, 476, 1101, 1279
Hpy188III TCNNGA 6 cut(s) 143, 612, 743, 899, 1007, 1299
Hpy8I GTNNAC 2 cut(s) 635, 803
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 4 cut(s) 259, 1043, 1223, 1305
HpyCH4III ACNGT 6 cut(s) 66, 553, 716, 773, 1013, 1275
HpyCH4IV ACGT 1 cut(s) 1196
HpyF10VI GCNNNNNNNGC 3 cut(s) 380, 726, 1250
HpyF3I CTNAG 2 cut(s) 678, 918
HpySE526I ACGT 1 cut(s) 1196
Hsp92II CATG 4 cut(s) 28, 213, 348, 937
HspAI GCGC 2 cut(s) 41, 708
Kzo9I GATC 2 cut(s) 110, 1247
LmnI GCTCC 9 cut(s) 61, 203, 338, 652, 667, 705, 734, 857, 1009
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 5 cut(s) 76, 626, 1071, 1156, 1160
MaeI CTAG 3 cut(s) 363, 984, 1284
MaeII ACGT 1 cut(s) 1196
MaeIII GTNAC 4 cut(s) 46, 60, 66, 656
MalI GATC 2 cut(s) 112, 1249
MboI GATC 2 cut(s) 110, 1247
MboII GAAGA 6 cut(s) 328, 399, 828, 949, 1123, 1149
MlsI TGGCCA 2 cut(s) 720, 912
MluCI AATT 9 cut(s) 18, 103, 285, 378, 597, 604, 811, 996, 1216
MluNI TGGCCA 2 cut(s) 720, 912
MlyI GAGTC 1 cut(s) 1030
MmeI TCCRAC 2 cut(s) 587, 683
MnlI CCTC 7 cut(s) 82, 237, 587, 675, 687, 876, 1315
Mox20I TGGCCA 2 cut(s) 720, 912
Mph1103I ATGCAT 3 cut(s) 877, 1064, 1153
MscI TGGCCA 2 cut(s) 720, 912
MseI TTAA 4 cut(s) 219, 398, 995, 1214
MslI CAYNNNNRTG 1 cut(s) 860
Msp20I TGGCCA 2 cut(s) 720, 912
MspI CCGG 6 cut(s) 15, 153, 235, 806, 1046, 1177
MspR9I CCNGG 7 cut(s) 132, 573, 699, 909, 1047, 1177, 1261
MvaI CCWGG 5 cut(s) 132, 573, 699, 909, 1261
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 3 cut(s) 380, 726, 1250
NciI CCSGG 2 cut(s) 1047, 1177
NdeII GATC 2 cut(s) 110, 1247
NlaIII CATG 4 cut(s) 28, 213, 348, 937
NlaIV GGNNCC 6 cut(s) 129, 136, 730, 829, 853, 974
NmuCI GTSAC 3 cut(s) 46, 60, 66
NsiI ATGCAT 3 cut(s) 877, 1064, 1153
NspI RCATGY 2 cut(s) 213, 348
PceI AGGCCT 2 cut(s) 189, 1032
PciI ACATGT 1 cut(s) 209
PflMI CCANNNNNTGG 1 cut(s) 1123
PkrI GCNGC 2 cut(s) 37, 40
PleI GAGTC 1 cut(s) 1029
PpsI GAGTC 1 cut(s) 1029
PpuMI RGGWCCY 2 cut(s) 135, 828
PscI ACATGT 1 cut(s) 209
PshBI ATTAAT 1 cut(s) 995
Psp5II RGGWCCY 2 cut(s) 135, 828
Psp6I CCWGG 5 cut(s) 130, 571, 697, 907, 1259
PspFI CCCAGC 1 cut(s) 1171
PspGI CCWGG 5 cut(s) 130, 571, 697, 907, 1259
PspN4I GGNNCC 6 cut(s) 129, 136, 730, 829, 853, 974
PspPI GGNCC 3 cut(s) 135, 828, 1097
PspPPI RGGWCCY 2 cut(s) 135, 828
RsaI GTAC 2 cut(s) 151, 308
RsaNI GTAC 2 cut(s) 150, 307
RseI CAYNNNNRTG 1 cut(s) 860
Rsr2I CGGWCCG 1 cut(s) 1097
RsrII CGGWCCG 1 cut(s) 1097
SaqAI TTAA 4 cut(s) 219, 398, 995, 1214
SatI GCNGC 2 cut(s) 36, 39
Sau3AI GATC 2 cut(s) 110, 1247
Sau96I GGNCC 3 cut(s) 135, 828, 1097
ScaI AGTACT 1 cut(s) 308
SchI GAGTC 1 cut(s) 1030
ScrFI CCNGG 7 cut(s) 132, 573, 699, 909, 1047, 1177, 1261
SfaNI GCATC 5 cut(s) 76, 626, 1071, 1156, 1160
SinI GGWCC 3 cut(s) 135, 828, 1097
SmiMI CAYNNNNRTG 1 cut(s) 860
SmlI CTYRAG 1 cut(s) 822
SmoI CTYRAG 1 cut(s) 822
Sse9I AATT 9 cut(s) 18, 103, 285, 378, 597, 604, 811, 996, 1216
SseBI AGGCCT 2 cut(s) 189, 1032
SsiI CCGC 2 cut(s) 39, 590
SspI AATATT 1 cut(s) 1312
SspMI CTAG 3 cut(s) 363, 984, 1284
StuI AGGCCT 2 cut(s) 189, 1032
StyD4I CCNGG 7 cut(s) 130, 571, 697, 907, 1045, 1175, 1259
StyI CCWWGG 3 cut(s) 796, 983, 1283
TaaI ACNGT 6 cut(s) 66, 553, 716, 773, 1013, 1275
TaiI ACGT 1 cut(s) 1199
TaqI TCGA 2 cut(s) 9, 421
TaqII GACCGA 3 cut(s) 65, 439, 1085
TasI AATT 9 cut(s) 18, 103, 285, 378, 597, 604, 811, 996, 1216
TatI WGTACW 1 cut(s) 306
TauI GCSGC 1 cut(s) 41
Tru1I TTAA 4 cut(s) 219, 398, 995, 1214
Tru9I TTAA 4 cut(s) 219, 398, 995, 1214
TscAI CASTG 6 cut(s) 69, 129, 259, 721, 768, 1278
TseFI GTSAC 3 cut(s) 46, 60, 66
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 3 cut(s) 46, 60, 66
TspDTI ATGAA 8 cut(s) 116, 278, 344, 513, 726, 828, 950, 1200
TspGWI ACGGA 2 cut(s) 48, 721
TspRI CASTG 6 cut(s) 69, 129, 259, 721, 768, 1278
Van91I CCANNNNNTGG 1 cut(s) 1123
VpaK11BI GGWCC 3 cut(s) 135, 828, 1097
VspI ATTAAT 1 cut(s) 995
XapI RAATTY 4 cut(s) 18, 103, 811, 1216
XceI RCATGY 2 cut(s) 213, 348
XmaJI CCTAGG 2 cut(s) 983, 1283
XspI CTAG 3 cut(s) 363, 984, 1284
ZrmI AGTACT 1 cut(s) 308
Zsp2I ATGCAT 3 cut(s) 877, 1064, 1153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.