Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0011471

Physical Location & Seq

Genomic Coordinates Forward (+)

46974214 .. 46977815

Gene Structure 3602 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00426150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGACTTCGATGCCGGAATTCCCATGTCCCGTGCTTCCGCCGCGCCTGTGACCGACGACGCCTCCTCACTGTCACCGCAAGATGCAATGTGGCAAATGAATTTGAGATCAAGTGAATCCATGGAACCTGGACCCTATCCTGAGCGAGCTGGAGAGCCAGATTGCTCTTATTACATCAGAACAGGCCTCTGTAGATTTGGGGCAACATGTCGCTTCAATCATCCTCCTAACCGAAAGCTGAATGAGATTGAATGTGCATATTATTTACGAACTGGACAATGCAAGTTTGCAAGCACTTGTAAATTCCACCATCCACAACCTACTAATATGATGGTTTCATTAAGTGGTTCTCCTGTATATCCTACTGTTCAATCTCCAACTACACCTGGTCAGCAGTCATACCCGGGAGGAGTTACAAACTGGTCAAGAGCATCTTTTATTCCCAGTCCGCGTTGGCAAGGTCCATCAAGTTATGCTCCTCTTATTGTTCCTCAGGGAGTGGTATCAGTCCCGGGATGGAGCCCATACAGTGGCCAGGTCGGCTCCATTTCAACTTCAGAGGGGCAGCAGCAAACGATAGGAAATAGTCAGAGGGAAAATGTATTTCCTGAGAGACCTGGCCAACCAGAGTGCCAGTTTTACATGAAGACAGGTGATTGTAAGTTTGGTGCGGTTTGTAGATTCCATCATCCTAGGGAGCGATTAATTCCTGCTCCAGATTGTGTTTTGAGTCCAATAGGCCTTCCTTTGCGACCGAACCTTTGTGCATCTTTTATTCTCGTTATGGTATCTGTAAGTTTGGTCCGAGTTGCAAGTTTGACCACCCTATGGGTATCTTCACTTATAACCTTTCTGCTTCATCTTCGGGGTGAGAGCCCTGGGCGGCGTTTGTTGGGGTCGGCATCAGGCACCACTTCATTAAATTTATCATCAGAAGGTCTAGTTGAAGCAGGATCAACAAAGCCAAGGAGACTTTCACTATCAGAGCCTAGGCAGATGCCTTCTGCAGATGAAAATATTGACACAGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010313 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016787 GO:0016788 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048027 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

344

Amino Acids

37.52

Weight (kDa)

7.53

Isoelectric Point (pI)

62.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	52 - 76	5.4e-08	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	84 - 106	2.1e-07	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	206 - 232	5e-09	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02830 AT3G02830
fragaria_vesca	FvH4_6g00570 FvH4_6g00570
malus_domestica	MD04G1244100.v1.1 MD12G1259900.v1.1
prunus_persica	Prupe.6G360600_v2.0.a1
pyrus_communis	pycom04g21500 pycom12g23800
rosa_chinensis	RchiOBHm_Chr3g0447961
rosa_laevigata	RLG00000025957
rosa_multiflora	Rmu_co8476507.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426150
rosa_rugosa	Rorug02G0607300 Rorug02G0607400
rosa_samantha	Rh3AG006600 Rh3BG006300 Rh3CG006500 Rh3DG006900
rosa_wichuraiana	Rw3G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	845
AccB1I	GGYRCC	1 cut(s)	908
AccB7I	CCANNNNNTGG	2 cut(s)	530, 828
AccII	CGCG	2 cut(s)	44, 451
AciI	CCGC	6 cut(s)	39, 42, 77, 449, 671, 883
AclWI	GGATC	1 cut(s)	961
AcoI	YGGCCR	2 cut(s)	532, 619
AcsI	RAATTY	4 cut(s)	18, 100, 302, 922
AcuI	CTGAAG	1 cut(s)	540
AcyI	GRCGYC	1 cut(s)	60
AfiI	CCNNNNNNNGG	2 cut(s)	530, 828
AflIII	ACRYGT	1 cut(s)	206
AgsI	TTSAA	5 cut(s)	217, 251, 371, 552, 947
AjnI	CCWGG	5 cut(s)	127, 385, 534, 616, 877
AjuI	GAANNNNNNNTTGG	2 cut(s)	958, 990
AluBI	AGCT	2 cut(s)	149, 238
AluI	AGCT	2 cut(s)	149, 238
Alw26I	GTCTC	2 cut(s)	607, 964
AlwI	GGATC	1 cut(s)	961
Ama87I	CYCGRG	2 cut(s)	403, 511
AoxI	GGCC	4 cut(s)	184, 532, 619, 739
ApeKI	GCWGC	2 cut(s)	565, 568
ApoI	RAATTY	4 cut(s)	18, 100, 302, 922
ArsI	GACNNNNNNTTYG	2 cut(s)	744, 776
AseI	ATTAAT	1 cut(s)	704
AspA2I	CCTAGG	2 cut(s)	692, 989
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	3 cut(s)	131, 461, 802
AsuC2I	CCSGG	4 cut(s)	404, 405, 512, 513
AsuHPI	GGTGA	3 cut(s)	66, 665, 881
AvaI	CYCGRG	2 cut(s)	403, 511
AvaII	GGWCC	3 cut(s)	131, 461, 802
AvrII	CCTAGG	2 cut(s)	692, 989
AxyI	CCTNAGG	1 cut(s)	492
BalI	TGGCCA	2 cut(s)	534, 621
BanI	GGYRCC	1 cut(s)	908
BanII	GRGCYC	2 cut(s)	524, 878
BbsI	GAAGAC	1 cut(s)	653
BbvI	GCAGC	2 cut(s)	577, 580
BccI	CCATC	5 cut(s)	318, 325, 472, 510, 693
BciT130I	CCWGG	5 cut(s)	129, 387, 536, 618, 879
BcnI	CCSGG	4 cut(s)	404, 405, 512, 513
BcoDI	GTCTC	2 cut(s)	607, 964
BfaI	CTAG	3 cut(s)	693, 941, 990
BfmI	CTRYAG	2 cut(s)	190, 1005
BglI	GCCNNNNNGGC	1 cut(s)	540
BisI	GCNGC	4 cut(s)	42, 566, 569, 884
BlnI	CCTAGG	2 cut(s)	692, 989
BlsI	GCNGC	4 cut(s)	43, 567, 570, 885
Bme1390I	CCNGG	9 cut(s)	129, 387, 404, 405, 512, 513, 536, 618, 879
Bme18I	GGWCC	3 cut(s)	131, 461, 802
BmeT110I	CYCGRG	2 cut(s)	403, 511
BmgT120I	GGNCC	3 cut(s)	131, 461, 802
BmiI	GGNNCC	5 cut(s)	126, 133, 521, 544, 910
BmrFI	CCNGG	9 cut(s)	129, 387, 404, 405, 512, 513, 536, 618, 879
BmrI	ACTGGG	1 cut(s)	438
BmsI	GCATC	5 cut(s)	73, 440, 776, 911, 987
BmuI	ACTGGG	1 cut(s)	438
BpiI	GAAGAC	1 cut(s)	653
BpmI	CTGGAG	2 cut(s)	171, 699
Bpu10I	CCTNAGC	1 cut(s)	141
BpuMI	CCSGG	4 cut(s)	404, 405, 512, 513
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	607
BsaJI	CCNNGG	8 cut(s)	120, 403, 511, 692, 877, 878, 965, 989
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	2 cut(s)	530, 828
Bse1I	ACTGG	4 cut(s)	277, 425, 444, 634
Bse21I	CCTNAGG	1 cut(s)	492
Bse3DI	GCAATG	1 cut(s)	93
BseBI	CCWGG	5 cut(s)	129, 387, 536, 618, 879
BseDI	CCNNGG	8 cut(s)	120, 403, 511, 692, 877, 878, 965, 989
BseGI	GGATG	4 cut(s)	220, 310, 521, 688
BseLI	CCNNNNNNNGG	2 cut(s)	530, 828
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	3 cut(s)	132, 506, 600
BseNI	ACTGG	4 cut(s)	277, 425, 444, 634
BseRI	GAGGAG	3 cut(s)	55, 423, 468
BseXI	GCAGC	2 cut(s)	577, 580
Bsh1236I	CGCG	2 cut(s)	44, 451
Bsh1285I	CGRYCG	1 cut(s)	755
BshFI	GGCC	4 cut(s)	186, 534, 621, 741
BshNI	GGYRCC	1 cut(s)	908
BsiEI	CGRYCG	1 cut(s)	755
BsiHKCI	CYCGRG	2 cut(s)	403, 511
BsiSI	CCGG	3 cut(s)	15, 404, 512
BslFI	GGGAC	2 cut(s)	13, 494
BslI	CCNNNNNNNGG	2 cut(s)	530, 828
BsmAI	GTCTC	2 cut(s)	607, 964
BsmFI	GGGAC	2 cut(s)	13, 494
BsnI	GGCC	4 cut(s)	186, 534, 621, 741
Bso31I	GGTCTC	1 cut(s)	607
BsoBI	CYCGRG	2 cut(s)	403, 511
Bsp1286I	GDGCHC	2 cut(s)	524, 878
Bsp143I	GATC	2 cut(s)	107, 953
Bsp19I	CCATGG	1 cut(s)	120
BspACI	CCGC	6 cut(s)	39, 42, 77, 449, 671, 883
BspANI	GGCC	4 cut(s)	186, 534, 621, 741
BspCNI	CTCAG	3 cut(s)	133, 505, 601
BspFNI	CGCG	2 cut(s)	44, 451
BspLI	GGNNCC	5 cut(s)	126, 133, 521, 544, 910
BspMAI	CTGCAG	1 cut(s)	1009
BspPI	GGATC	1 cut(s)	961
BspT107I	GGYRCC	1 cut(s)	908
BspTNI	GGTCTC	1 cut(s)	607
BsrDI	GCAATG	1 cut(s)	93
BsrI	ACTGG	4 cut(s)	277, 425, 444, 634
BssECI	CCNNGG	8 cut(s)	120, 403, 511, 692, 877, 878, 965, 989
BssMI	GATC	2 cut(s)	107, 953
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	4 cut(s)	120, 692, 965, 989
Bst2UI	CCWGG	5 cut(s)	129, 387, 536, 618, 879
Bst4CI	ACNGT	3 cut(s)	72, 367, 530
BstACI	GRCGYC	1 cut(s)	60
BstC8I	GCNNGC	2 cut(s)	147, 292
BstDEI	CTNAG	3 cut(s)	141, 492, 609
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	4 cut(s)	220, 310, 521, 688
BstFNI	CGCG	2 cut(s)	44, 451
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	2 cut(s)	110, 956
BstMAI	GTCTC	2 cut(s)	607, 964
BstMBI	GATC	2 cut(s)	107, 953
BstMCI	CGRYCG	1 cut(s)	755
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 540
BstNI	CCWGG	5 cut(s)	129, 387, 536, 618, 879
BstNSI	RCATGY	1 cut(s)	210
BstSCI	CCNGG	9 cut(s)	127, 385, 402, 403, 510, 511, 534, 616, 877
BstSFI	CTRYAG	2 cut(s)	190, 1005
BstUI	CGCG	2 cut(s)	44, 451
BstV1I	GCAGC	2 cut(s)	577, 580
BstV2I	GAAGAC	1 cut(s)	653
Bsu36I	CCTNAGG	1 cut(s)	492
BsuRI	GGCC	4 cut(s)	186, 534, 621, 741
BtgI	CCRYGG	1 cut(s)	120
BtsCI	GGATG	4 cut(s)	220, 310, 521, 688
BtsIMutI	CAGTG	2 cut(s)	68, 535
Cac8I	GCNNGC	2 cut(s)	147, 292
CfoI	GCGC	1 cut(s)	46
Cfr13I	GGNCC	3 cut(s)	131, 461, 802
Cfr9I	CCCGGG	2 cut(s)	403, 511
CseI	GACGC	1 cut(s)	68
CsiI	ACCWGGT	1 cut(s)	385
CviAII	CATG	4 cut(s)	25, 121, 207, 643
DdeI	CTNAG	3 cut(s)	141, 492, 609
DpnI	GATC	2 cut(s)	109, 955
DpnII	GATC	2 cut(s)	107, 953
EaeI	YGGCCR	2 cut(s)	532, 619
EciI	GGCGGA	1 cut(s)	28
Eco130I	CCWWGG	4 cut(s)	120, 692, 965, 989
Eco147I	AGGCCT	2 cut(s)	186, 741
Eco24I	GRGCYC	2 cut(s)	524, 878
Eco31I	GGTCTC	1 cut(s)	607
Eco47I	GGWCC	3 cut(s)	131, 461, 802
Eco57I	CTGAAG	1 cut(s)	540
Eco81I	CCTNAGG	1 cut(s)	492
Eco88I	CYCGRG	2 cut(s)	403, 511
EcoRI	GAATTC	1 cut(s)	18
EcoRII	CCWGG	5 cut(s)	127, 385, 534, 616, 877
EcoT14I	CCWWGG	4 cut(s)	120, 692, 965, 989
EcoT38I	GRGCYC	2 cut(s)	524, 878
ErhI	CCWWGG	4 cut(s)	120, 692, 965, 989
FaeI	CATG	4 cut(s)	28, 124, 210, 646
FalI	AAGNNNNNCTT	2 cut(s)	418, 450
FaqI	GGGAC	2 cut(s)	13, 494
FatI	CATG	4 cut(s)	24, 120, 206, 642
Fnu4HI	GCNGC	4 cut(s)	42, 566, 569, 884
FokI	GGATG	4 cut(s)	207, 297, 528, 675
FriOI	GRGCYC	2 cut(s)	524, 878
Fsp4HI	GCNGC	4 cut(s)	42, 566, 569, 884
FspBI	CTAG	3 cut(s)	693, 941, 990
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	4 cut(s)	42, 566, 569, 884
GsuI	CTGGAG	2 cut(s)	171, 699
HaeIII	GGCC	4 cut(s)	186, 534, 621, 741
HapII	CCGG	3 cut(s)	15, 404, 512
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	46
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	4 cut(s)	28, 124, 210, 646
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HinfI	GANTC	3 cut(s)	116, 681, 730
HpaII	CCGG	3 cut(s)	15, 404, 512
HphI	GGTGA	3 cut(s)	66, 665, 881
Hpy188I	TCNGA	6 cut(s)	179, 559, 591, 806, 934, 985
Hpy188III	TCNNGA	4 cut(s)	140, 426, 608, 716
Hpy99I	CGWCG	2 cut(s)	59, 62
HpyAV	CCTTC	3 cut(s)	752, 929, 1011
HpyCH4III	ACNGT	3 cut(s)	72, 367, 530
HpyCH4V	TGCA	7 cut(s)	86, 257, 282, 290, 767, 812, 1007
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 540
HpyF3I	CTNAG	3 cut(s)	141, 492, 609
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	4 cut(s)	28, 124, 210, 646
HspAI	GCGC	1 cut(s)	44
Kzo9I	GATC	2 cut(s)	107, 953
LmnI	GCTCC	5 cut(s)	481, 519, 548, 697, 718
Lsp1109I	GCAGC	2 cut(s)	577, 580
LweI	GCATC	5 cut(s)	73, 440, 776, 911, 987
MabI	ACCWGGT	1 cut(s)	385
MaeI	CTAG	3 cut(s)	693, 941, 990
MaeIII	GTNAC	3 cut(s)	49, 72, 412
MalI	GATC	2 cut(s)	109, 955
MboI	GATC	2 cut(s)	107, 953
MboII	GAAGA	3 cut(s)	658, 828, 854
MhlI	GDGCHC	2 cut(s)	524, 878
MlsI	TGGCCA	2 cut(s)	534, 621
MluCI	AATT	5 cut(s)	18, 100, 302, 705, 922
MluNI	TGGCCA	2 cut(s)	534, 621
MlyI	GAGTC	1 cut(s)	739
MmeI	TCCRAC	1 cut(s)	401
Mox20I	TGGCCA	2 cut(s)	534, 621
MscI	TGGCCA	2 cut(s)	534, 621
MseI	TTAA	3 cut(s)	341, 704, 920
Msp20I	TGGCCA	2 cut(s)	534, 621
MspI	CCGG	3 cut(s)	15, 404, 512
MspR9I	CCNGG	9 cut(s)	129, 387, 404, 405, 512, 513, 536, 618, 879
MvaI	CCWGG	5 cut(s)	129, 387, 536, 618, 879
MvnI	CGCG	2 cut(s)	44, 451
MwoI	GCNNNNNNNGC	2 cut(s)	41, 540
NciI	CCSGG	4 cut(s)	404, 405, 512, 513
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	2 cut(s)	107, 953
NlaIII	CATG	4 cut(s)	28, 124, 210, 646
NlaIV	GGNNCC	5 cut(s)	126, 133, 521, 544, 910
NmuCI	GTSAC	2 cut(s)	49, 72
NspI	RCATGY	1 cut(s)	210
PasI	CCCWGGG	1 cut(s)	878
PceI	AGGCCT	2 cut(s)	186, 741
PciI	ACATGT	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	116, 681
PflMI	CCANNNNNTGG	2 cut(s)	530, 828
PkrI	GCNGC	4 cut(s)	43, 567, 570, 885
PleI	GAGTC	1 cut(s)	738
PpsI	GAGTC	1 cut(s)	738
PscI	ACATGT	1 cut(s)	206
PshBI	ATTAAT	1 cut(s)	704
PsiI	TTATAA	1 cut(s)	845
Psp6I	CCWGG	5 cut(s)	127, 385, 534, 616, 877
PspGI	CCWGG	5 cut(s)	127, 385, 534, 616, 877
PspN4I	GGNNCC	5 cut(s)	126, 133, 521, 544, 910
PspPI	GGNCC	3 cut(s)	131, 461, 802
PstI	CTGCAG	1 cut(s)	1009
SaqAI	TTAA	3 cut(s)	341, 704, 920
SatI	GCNGC	4 cut(s)	42, 566, 569, 884
Sau3AI	GATC	2 cut(s)	107, 953
Sau96I	GGNCC	3 cut(s)	131, 461, 802
SchI	GAGTC	1 cut(s)	739
ScrFI	CCNGG	9 cut(s)	129, 387, 404, 405, 512, 513, 536, 618, 879
SduI	GDGCHC	2 cut(s)	524, 878
SexAI	ACCWGGT	1 cut(s)	385
SfaNI	GCATC	5 cut(s)	73, 440, 776, 911, 987
SfcI	CTRYAG	2 cut(s)	190, 1005
SinI	GGWCC	3 cut(s)	131, 461, 802
SmaI	CCCGGG	2 cut(s)	405, 513
Sse9I	AATT	5 cut(s)	18, 100, 302, 705, 922
SseBI	AGGCCT	2 cut(s)	186, 741
SsiI	CCGC	6 cut(s)	39, 42, 77, 449, 671, 883
SspI	AATATT	1 cut(s)	1018
SspMI	CTAG	3 cut(s)	693, 941, 990
StuI	AGGCCT	2 cut(s)	186, 741
StyD4I	CCNGG	9 cut(s)	127, 385, 402, 403, 510, 511, 534, 616, 877
StyI	CCWWGG	4 cut(s)	120, 692, 965, 989
TaaI	ACNGT	3 cut(s)	72, 367, 530
TaqI	TCGA	1 cut(s)	9
TaqII	GACCGA	2 cut(s)	68, 769
TasI	AATT	5 cut(s)	18, 100, 302, 705, 922
TauI	GCSGC	2 cut(s)	44, 886
TfiI	GAWTC	2 cut(s)	116, 681
Tru1I	TTAA	3 cut(s)	341, 704, 920
Tru9I	TTAA	3 cut(s)	341, 704, 920
TscAI	CASTG	2 cut(s)	75, 535
TseFI	GTSAC	2 cut(s)	49, 72
TseI	GCWGC	2 cut(s)	565, 568
Tsp45I	GTSAC	2 cut(s)	49, 72
TspDTI	ATGAA	6 cut(s)	113, 327, 659, 848, 906, 1026
TspMI	CCCGGG	2 cut(s)	403, 511
TspRI	CASTG	2 cut(s)	75, 535
Van91I	CCANNNNNTGG	2 cut(s)	530, 828
VpaK11BI	GGWCC	3 cut(s)	131, 461, 802
VspI	ATTAAT	1 cut(s)	704
XapI	RAATTY	4 cut(s)	18, 100, 302, 922
XceI	RCATGY	1 cut(s)	210
XmaI	CCCGGG	2 cut(s)	403, 511
XmaJI	CCTAGG	2 cut(s)	692, 989
XspI	CTAG	3 cut(s)	693, 941, 990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.