Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011471

Physical Location & Seq

Genomic Coordinates Reverse (-)

72462211 .. 72462783

Gene Structure 573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0607400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTCAGGAGGAACAGAAGCTTTTCCAGATTTGGGAAGACATTGCCAGCACCCTGATTGCCACCAACTCGATTTCCTCCCATTCAAATGCGCCGGCTGCCATGACGTGTTCTGCGTCGAACACCGCTCTTACAAGTCCCACGACTGCCCCAAATCCGACCACAACAGCCGGAAAGTGATCATTTGCGAGGTCTGCTCCACCTCCATAGAGACCACCGGCCACGACGGCGAAGCGAGCCAGAAGGTGTTGCTGGAGAGGCACAGCAAGTCCGGGGATTGCGACCCGAAAAAGAAGAAGAAGCCCACATGCCCTGTTAAGAGGTGCAAGGAGATTCTGACCTTTTCGAATAATAGTACTTGCAAGACTTGCCATTTGAAGGTCTGCCTCAAGCACCGGTTTCCGGCAGACCATGAATGTAAGAAGGAAGCGAAGGCGGTGCCTGTGGCGGCGAACGGAGGGGCCTGGAATGGGAGGTTCTTGGCTGCTTTTGCTTCGAGGAATGGGAAAGATTGTGGGAAGAGTGAGAGGGGTTCCAAGTCTCCTCCCAGTACTCCATCAGTTAGGGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010313 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016787 GO:0016788 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048027 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

190

Amino Acids

20.9

Weight (kDa)

8.99

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-AN1	PF01428	15 - 52	8.8e-11	AN1-like Zinc finger
zf-AN1	PF01428	103 - 143	8.4e-09	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02830 AT3G02830
fragaria_vesca	FvH4_6g00570 FvH4_6g00570
malus_domestica	MD04G1244100.v1.1 MD12G1259900.v1.1
prunus_persica	Prupe.6G360600_v2.0.a1
pyrus_communis	pycom04g21500 pycom12g23800
rosa_chinensis	RchiOBHm_Chr3g0447961
rosa_laevigata	RLG00000025957
rosa_multiflora	Rmu_co8476507.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426150
rosa_rugosa	Rorug02G0607300 Rorug02G0607400
rosa_samantha	Rh3AG006600 Rh3BG006300 Rh3CG006500 Rh3DG006900
rosa_wichuraiana	Rw3G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	436
AccBSI	CCGCTC	1 cut(s)	126
AciI	CCGC	3 cut(s)	124, 434, 446
AcoI	YGGCCR	1 cut(s)	217
AfaI	GTAC	2 cut(s)	355, 550
AfiI	CCNNNNNNNGG	4 cut(s)	32, 376, 400, 468
AflIII	ACRYGT	1 cut(s)	105
AgeI	ACCGGT	1 cut(s)	393
AgsI	TTSAA	2 cut(s)	85, 376
AjiI	CACGTC	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	461
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw26I	GTCTC	2 cut(s)	203, 543
AoxI	GGCC	2 cut(s)	217, 459
ApeKI	GCWGC	2 cut(s)	96, 482
ArsI	GACNNNNNNTTYG	2 cut(s)	355, 387
AsiGI	ACCGGT	1 cut(s)	393
Asp700I	GAANNNNTTC	1 cut(s)	21
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	459
AsuC2I	CCSGG	1 cut(s)	271
AsuII	TTCGAA	1 cut(s)	344
BanI	GGYRCC	1 cut(s)	436
BbsI	GAAGAC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	83, 469
BccI	CCATC	1 cut(s)	562
BceAI	ACGGC	1 cut(s)	241
BcgI	CGANNNNNNTGC	2 cut(s)	418, 452
BciT130I	CCWGG	1 cut(s)	463
BclI	TGATCA	1 cut(s)	177
BcnI	CCSGG	1 cut(s)	271
BcoDI	GTCTC	2 cut(s)	203, 543
BglI	GCCNNNNNGGC	1 cut(s)	225
BisI	GCNGC	3 cut(s)	97, 447, 483
BlsI	GCNGC	3 cut(s)	98, 448, 484
BmcAI	AGTACT	2 cut(s)	355, 550
Bme1390I	CCNGG	2 cut(s)	271, 463
BmgBI	CACGTC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	459
BmiI	GGNNCC	3 cut(s)	438, 460, 532
BmrFI	CCNGG	2 cut(s)	271, 463
BmrI	ACTGGG	1 cut(s)	540
BmuI	ACTGGG	1 cut(s)	540
BpiI	GAAGAC	1 cut(s)	43
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
BpmI	CTGGAG	1 cut(s)	272
Bpu14I	TTCGAA	1 cut(s)	344
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	271
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	393
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 376, 400, 468
Bse118I	RCCGGY	3 cut(s)	92, 215, 393
Bse1I	ACTGG	1 cut(s)	546
Bse3DI	GCAATG	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	463
BseDI	CCNNGG	1 cut(s)	270
BseLI	CCNNNNNNNGG	4 cut(s)	32, 376, 400, 468
BseMI	GCAATG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	546
BseRI	GAGGAG	1 cut(s)	531
BseXI	GCAGC	2 cut(s)	83, 469
BshFI	GGCC	2 cut(s)	219, 461
BshNI	GGYRCC	1 cut(s)	436
BshTI	ACCGGT	1 cut(s)	393
BsiSI	CCGG	6 cut(s)	93, 169, 216, 270, 394, 401
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	4 cut(s)	32, 376, 400, 468
BsmAI	GTCTC	2 cut(s)	203, 543
BsmFI	GGGAC	1 cut(s)	121
BsnI	GGCC	2 cut(s)	219, 461
Bso31I	GGTCTC	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	344
Bsp143I	GATC	1 cut(s)	177
BspACI	CCGC	3 cut(s)	124, 434, 446
BspANI	GGCC	2 cut(s)	219, 461
BspLI	GGNNCC	3 cut(s)	438, 460, 532
BspT104I	TTCGAA	1 cut(s)	344
BspT107I	GGYRCC	1 cut(s)	436
BspTNI	GGTCTC	1 cut(s)	203
BsrBI	CCGCTC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	40
BsrFI	RCCGGY	3 cut(s)	92, 215, 393
BsrI	ACTGG	1 cut(s)	546
BssAI	RCCGGY	3 cut(s)	92, 215, 393
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	463
Bst6I	CTCTTC	1 cut(s)	512
BstAPI	GCANNNNNTGC	1 cut(s)	366
BstBI	TTCGAA	1 cut(s)	344
BstC8I	GCNNGC	3 cut(s)	47, 94, 235
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	2 cut(s)	203, 543
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	7 cut(s)	96, 192, 225, 234, 256, 366, 488
BstNI	CCWGG	1 cut(s)	463
BstNSI	RCATGY	1 cut(s)	309
BstSCI	CCNGG	2 cut(s)	269, 461
BstV1I	GCAGC	2 cut(s)	83, 469
BstV2I	GAAGAC	1 cut(s)	43
BsuRI	GGCC	2 cut(s)	219, 461
BtrI	CACGTC	1 cut(s)	106
Cac8I	GCNNGC	3 cut(s)	47, 94, 235
CfoI	GCGC	1 cut(s)	92
Cfr10I	RCCGGY	3 cut(s)	92, 215, 393
Cfr13I	GGNCC	1 cut(s)	459
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	2 cut(s)	354, 549
CspAI	ACCGGT	1 cut(s)	393
CviAII	CATG	3 cut(s)	101, 306, 410
CviJI	RGCY	8 cut(s)	20, 96, 168, 219, 237, 301, 461, 482
CviKI_1	RGCY	8 cut(s)	20, 96, 168, 219, 237, 301, 461, 482
CviQI	GTAC	2 cut(s)	354, 549
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	512
EarI	CTCTTC	1 cut(s)	512
Eco31I	GGTCTC	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	459
EcoRII	CCWGG	1 cut(s)	461
FaeI	CATG	3 cut(s)	104, 309, 413
FaiI	YATR	4 cut(s)	102, 206, 307, 411
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	3 cut(s)	100, 305, 409
FbaI	TGATCA	1 cut(s)	177
Fnu4HI	GCNGC	3 cut(s)	97, 447, 483
Fsp4HI	GCNGC	3 cut(s)	97, 447, 483
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	3 cut(s)	97, 447, 483
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	2 cut(s)	219, 461
HapII	CCGG	6 cut(s)	93, 169, 216, 270, 394, 401
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	3 cut(s)	104, 309, 413
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	1 cut(s)	331
HpaII	CCGG	6 cut(s)	93, 169, 216, 270, 394, 401
Hpy188I	TCNGA	2 cut(s)	157, 336
Hpy188III	TCNNGA	2 cut(s)	6, 26
Hpy99I	CGWCG	2 cut(s)	119, 227
HpyAV	CCTTC	4 cut(s)	235, 370, 415, 424
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	2 cut(s)	324, 360
HpyF10VI	GCNNNNNNNGC	7 cut(s)	96, 192, 225, 234, 256, 366, 488
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	3 cut(s)	104, 309, 413
HspAI	GCGC	1 cut(s)	90
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	2 cut(s)	83, 469
MaeII	ACGT	1 cut(s)	105
MalI	GATC	1 cut(s)	179
MbiI	CCGCTC	1 cut(s)	126
MboI	GATC	1 cut(s)	177
MboII	GAAGA	4 cut(s)	48, 304, 307, 529
MmeI	TCCRAC	1 cut(s)	180
MroNI	GCCGGC	1 cut(s)	92
MroXI	GAANNNNTTC	1 cut(s)	21
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	85
MspI	CCGG	6 cut(s)	93, 169, 216, 270, 394, 401
MspR9I	CCNGG	2 cut(s)	271, 463
MvaI	CCWGG	1 cut(s)	463
MwoI	GCNNNNNNNGC	7 cut(s)	96, 192, 225, 234, 256, 366, 488
NaeI	GCCGGC	1 cut(s)	94
NciI	CCSGG	1 cut(s)	271
NdeII	GATC	1 cut(s)	177
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	3 cut(s)	104, 309, 413
NlaIV	GGNNCC	3 cut(s)	438, 460, 532
NspI	RCATGY	1 cut(s)	309
NspV	TTCGAA	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PdiI	GCCGGC	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	331
PinAI	ACCGGT	1 cut(s)	393
PkrI	GCNGC	3 cut(s)	98, 448, 484
Psp6I	CCWGG	1 cut(s)	461
PspGI	CCWGG	1 cut(s)	461
PspN4I	GGNNCC	3 cut(s)	438, 460, 532
PspPI	GGNCC	1 cut(s)	459
RsaI	GTAC	2 cut(s)	355, 550
RsaNI	GTAC	2 cut(s)	354, 549
RseI	CAYNNNNRTG	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	3 cut(s)	97, 447, 483
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	1 cut(s)	459
ScaI	AGTACT	2 cut(s)	355, 550
ScrFI	CCNGG	2 cut(s)	271, 463
SetI	ASST	9 cut(s)	22, 108, 192, 203, 246, 323, 341, 381, 476
SfuI	TTCGAA	1 cut(s)	344
SmiMI	CAYNNNNRTG	1 cut(s)	85
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
SsiI	CCGC	3 cut(s)	124, 434, 446
StyD4I	CCNGG	2 cut(s)	269, 461
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	4 cut(s)	69, 117, 344, 494
TatI	WGTACW	2 cut(s)	353, 548
TauI	GCSGC	1 cut(s)	449
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TseI	GCWGC	2 cut(s)	96, 482
TspDTI	ATGAA	1 cut(s)	426
TspGWI	ACGGA	1 cut(s)	468
XceI	RCATGY	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	21
ZrmI	AGTACT	2 cut(s)	355, 550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.