Rh3BG006300

Zinc finger CCCH domain-containing protein ZFN-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0011471
Physical Location & Seq
Forward (+)
444787 .. 449652
4866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG006300.1

Sequence Viewer

Length: 975 bp
ATGTGGCAAATGAATTTGAGATCAAGTGAATCAATGGAACCTGGACCCTATCCTGAGCGAGCTGGAGAGCCAGATTGCTCTTATTACATCAGAACAGGCCTCTGTAGATTTGGGGCAACATGTCGCTTCAATCATCCTCCTAACCGAAAGCTGGCTATTGCCACTGCAAGAATGAAGGGGGAGTTCCCAGAAAGAATTGGACAACCTGAATGCCAGTATTACCTGAAGACAGGAACTTGCAAGTTCGGAGCGACATGCAAGTTTCATCATCCTAGAGACAAGGCAGGAATTGCTGGAAGAGTTGCCTTAAATATCTTAGGCTATCCACTTCGACCGAATGAGATTGAATGTGCATATTATTTACGAACTGGACAATGCAAGTTTGCAAGCACTTGTAAATTCCACCATCCACAACCTACTAATATGATGGTTTCATTAAGTGGTTCTCCTGTATATCCTACTGTTCAATCTCCAACTACACCTGGTCAGCAGTCATACCCGGGAGGAGTTACAAACTGGTCAAGAGCATCTTTTATTCCCAGTCCGCGTTGGCAAGGTCCATCAAGTTATGCTCCTCTTATTGTTCCTCAGGGAGTGGTATCAGTCCCGGGATGGAGCCCATACAGTGGCCAGGTCGGCTCCATTTCAACATCAGAGGGGCAGCAGCAAACGATAGGAAGTAGTCAGGTTTATGGAACTCCACGCCAACGTGAACCGGAAAATTCAGGATCTCAAGGGGCCTTTTCTTCATACCGGTCTGGCTCCATTCCTGTAGGGTTCTATGCATTGCAGAGGGAAAATGTATTTCCTGAGAGACCTGGCCAACCAGAGTGCCAGTTTTACATGAAGACAGGTGATTGTAAGTTTGGTGCGGTTTGTAGGTTCCATCATCCTAGGGAGCGATTAATTCCTGCTCCAGATTGTGTTTTGAGTCCAATAGGCCTTCCTTTGCGACCGGTGAGTTACTTTTGTTGA

Protein Analysis

324

Amino Acids

35.86

Weight (kDa)

9.18

Isoelectric Point (pI)

57.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 23 - 47 5e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 68 - 92 3.5e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 116 - 138 1.2e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 273 - 299 4.6e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02830 AT3G02830
fragaria_vesca FvH4_6g00570 FvH4_6g00570
malus_domestica MD04G1244100.v1.1 MD12G1259900.v1.1
prunus_persica Prupe.6G360600_v2.0.a1
pyrus_communis pycom04g21500 pycom12g23800
rosa_chinensis RchiOBHm_Chr3g0447961
rosa_laevigata RLG00000025957
rosa_multiflora Rmu_co8476507.1_g000001
rosa_roxburghii Rroxscaffold_6G00426150
rosa_rugosa Rorug02G0607300 Rorug02G0607400
rosa_samantha Rh3AG006600 Rh3BG006300 Rh3CG006500 Rh3DG006900
rosa_wichuraiana Rw3G000530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 626
AccII CGCG 1 cut(s) 547
AciI CCGC 2 cut(s) 545, 872
AclWI GGATC 1 cut(s) 736
AcoI YGGCCR 2 cut(s) 628, 820
AcsI RAATTY 3 cut(s) 13, 398, 721
AcuI CTGAAG 1 cut(s) 245
AfiI CCNNNNNNNGG 2 cut(s) 151, 626
AflIII ACRYGT 1 cut(s) 119
AgeI ACCGGT 2 cut(s) 753, 955
AgsI TTSAA 4 cut(s) 130, 347, 467, 648
AjnI CCWGG 4 cut(s) 40, 481, 630, 817
AluBI AGCT 2 cut(s) 62, 151
AluI AGCT 2 cut(s) 62, 151
Alw26I GTCTC 2 cut(s) 270, 808
AlwI GGATC 1 cut(s) 736
Ama87I CYCGRG 2 cut(s) 499, 607
AoxI GGCC 5 cut(s) 97, 628, 738, 820, 940
ApeKI GCWGC 2 cut(s) 661, 664
ApoI RAATTY 3 cut(s) 13, 398, 721
AseI ATTAAT 1 cut(s) 905
AsiGI ACCGGT 2 cut(s) 753, 955
AspA2I CCTAGG 1 cut(s) 893
AspS9I GGNCC 3 cut(s) 44, 557, 738
AsuC2I CCSGG 4 cut(s) 500, 501, 608, 609
AsuHPI GGTGA 2 cut(s) 866, 970
AvaI CYCGRG 2 cut(s) 499, 607
AvaII GGWCC 2 cut(s) 44, 557
AvrII CCTAGG 1 cut(s) 893
AxyI CCTNAGG 1 cut(s) 588
BalI TGGCCA 2 cut(s) 630, 822
BanII GRGCYC 1 cut(s) 620
BbsI GAAGAC 2 cut(s) 233, 854
BbvI GCAGC 2 cut(s) 673, 676
BccI CCATC 5 cut(s) 414, 421, 568, 606, 894
BciT130I CCWGG 4 cut(s) 42, 483, 632, 819
BcnI CCSGG 4 cut(s) 500, 501, 608, 609
BcoDI GTCTC 2 cut(s) 270, 808
BfaI CTAG 2 cut(s) 273, 894
BfmI CTRYAG 2 cut(s) 103, 771
BglI GCCNNNNNGGC 1 cut(s) 636
BisI GCNGC 2 cut(s) 662, 665
BlnI CCTAGG 1 cut(s) 893
BlsI GCNGC 2 cut(s) 663, 666
Bme1390I CCNGG 8 cut(s) 42, 483, 500, 501, 608, 609, 632, 819
Bme18I GGWCC 2 cut(s) 44, 557
BmeT110I CYCGRG 2 cut(s) 499, 607
BmgT120I GGNCC 3 cut(s) 44, 557, 738
BmiI GGNNCC 7 cut(s) 39, 46, 617, 640, 739, 763, 884
BmrFI CCNGG 8 cut(s) 42, 483, 500, 501, 608, 609, 632, 819
BmrI ACTGGG 1 cut(s) 534
BmsI GCATC 1 cut(s) 536
BmuI ACTGGG 1 cut(s) 534
BpiI GAAGAC 2 cut(s) 233, 854
BpmI CTGGAG 2 cut(s) 84, 900
Bpu10I CCTNAGC 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 717
BpuMI CCSGG 4 cut(s) 500, 501, 608, 609
BsaI GGTCTC 1 cut(s) 808
BsaJI CCNNGG 3 cut(s) 499, 607, 893
BsaWI WCCGGW 3 cut(s) 715, 753, 955
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 626
Bse118I RCCGGY 2 cut(s) 753, 955
Bse1I ACTGG 5 cut(s) 214, 373, 521, 540, 835
Bse21I CCTNAGG 1 cut(s) 588
Bse3DI GCAATG 1 cut(s) 785
BseBI CCWGG 4 cut(s) 42, 483, 632, 819
BseDI CCNNGG 3 cut(s) 499, 607, 893
BseGI GGATG 5 cut(s) 133, 268, 406, 617, 889
BseLI CCNNNNNNNGG 2 cut(s) 151, 626
BseMI GCAATG 1 cut(s) 785
BseMII CTCAG 3 cut(s) 45, 602, 801
BseNI ACTGG 5 cut(s) 214, 373, 521, 540, 835
BseRI GAGGAG 2 cut(s) 519, 564
BseXI GCAGC 2 cut(s) 673, 676
Bsh1236I CGCG 1 cut(s) 547
Bsh1285I CGRYCG 2 cut(s) 335, 956
BshFI GGCC 5 cut(s) 99, 630, 740, 822, 942
BshTI ACCGGT 2 cut(s) 753, 955
BsiEI CGRYCG 2 cut(s) 335, 956
BsiHKCI CYCGRG 2 cut(s) 499, 607
BsiSI CCGG 5 cut(s) 500, 608, 716, 754, 956
BslFI GGGAC 1 cut(s) 590
BslI CCNNNNNNNGG 2 cut(s) 151, 626
BsmAI GTCTC 2 cut(s) 270, 808
BsmFI GGGAC 1 cut(s) 590
BsmI GAATGC 1 cut(s) 215
BsnI GGCC 5 cut(s) 99, 630, 740, 822, 942
Bso31I GGTCTC 1 cut(s) 808
BsoBI CYCGRG 2 cut(s) 499, 607
Bsp1286I GDGCHC 1 cut(s) 620
Bsp143I GATC 2 cut(s) 20, 728
BspACI CCGC 2 cut(s) 545, 872
BspANI GGCC 5 cut(s) 99, 630, 740, 822, 942
BspCNI CTCAG 3 cut(s) 46, 601, 802
BspFNI CGCG 1 cut(s) 547
BspLI GGNNCC 7 cut(s) 39, 46, 617, 640, 739, 763, 884
BspPI GGATC 1 cut(s) 736
BspTNI GGTCTC 1 cut(s) 808
BsrDI GCAATG 1 cut(s) 785
BsrFI RCCGGY 2 cut(s) 753, 955
BsrI ACTGG 5 cut(s) 214, 373, 521, 540, 835
BssAI RCCGGY 2 cut(s) 753, 955
BssECI CCNNGG 3 cut(s) 499, 607, 893
BssMI GATC 2 cut(s) 20, 728
BssT1I CCWWGG 1 cut(s) 893
Bst2UI CCWGG 4 cut(s) 42, 483, 632, 819
Bst4CI ACNGT 2 cut(s) 463, 626
Bst6I CTCTTC 1 cut(s) 292
BstAPI GCANNNNNTGC 1 cut(s) 290
BstC8I GCNNGC 3 cut(s) 60, 153, 388
BstDEI CTNAG 4 cut(s) 54, 316, 588, 810
BstF5I GGATG 5 cut(s) 133, 268, 406, 617, 889
BstFNI CGCG 1 cut(s) 547
BstKTI GATC 2 cut(s) 23, 731
BstMAI GTCTC 2 cut(s) 270, 808
BstMBI GATC 2 cut(s) 20, 728
BstMCI CGRYCG 2 cut(s) 335, 956
BstMWI GCNNNNNNNGC 2 cut(s) 290, 636
BstNI CCWGG 4 cut(s) 42, 483, 632, 819
BstNSI RCATGY 2 cut(s) 123, 258
BstSCI CCNGG 8 cut(s) 40, 481, 498, 499, 606, 607, 630, 817
BstSFI CTRYAG 2 cut(s) 103, 771
BstUI CGCG 1 cut(s) 547
BstV1I GCAGC 2 cut(s) 673, 676
BstV2I GAAGAC 2 cut(s) 233, 854
BstX2I RGATCY 1 cut(s) 728
BstYI RGATCY 1 cut(s) 728
Bsu36I CCTNAGG 1 cut(s) 588
BsuRI GGCC 5 cut(s) 99, 630, 740, 822, 942
BtsCI GGATG 5 cut(s) 133, 268, 406, 617, 889
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 2 cut(s) 162, 631
Cac8I GCNNGC 3 cut(s) 60, 153, 388
Cfr10I RCCGGY 2 cut(s) 753, 955
Cfr13I GGNCC 3 cut(s) 44, 557, 738
Cfr9I CCCGGG 2 cut(s) 499, 607
CsiI ACCWGGT 1 cut(s) 481
CspAI ACCGGT 2 cut(s) 753, 955
CviAII CATG 3 cut(s) 120, 255, 844
DdeI CTNAG 4 cut(s) 54, 316, 588, 810
DpnI GATC 2 cut(s) 22, 730
DpnII GATC 2 cut(s) 20, 728
EaeI YGGCCR 2 cut(s) 628, 820
Eam1104I CTCTTC 1 cut(s) 292
EarI CTCTTC 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 893
Eco147I AGGCCT 2 cut(s) 99, 942
Eco24I GRGCYC 1 cut(s) 620
Eco31I GGTCTC 1 cut(s) 808
Eco47I GGWCC 2 cut(s) 44, 557
Eco57I CTGAAG 1 cut(s) 245
Eco81I CCTNAGG 1 cut(s) 588
Eco88I CYCGRG 2 cut(s) 499, 607
EcoO109I RGGNCCY 1 cut(s) 738
EcoRII CCWGG 4 cut(s) 40, 481, 630, 817
EcoT14I CCWWGG 1 cut(s) 893
EcoT22I ATGCAT 1 cut(s) 787
EcoT38I GRGCYC 1 cut(s) 620
ErhI CCWWGG 1 cut(s) 893
FaeI CATG 3 cut(s) 123, 258, 847
FalI AAGNNNNNCTT 2 cut(s) 514, 546
FaqI GGGAC 1 cut(s) 590
FatI CATG 3 cut(s) 119, 254, 843
Fnu4HI GCNGC 2 cut(s) 662, 665
FokI GGATG 5 cut(s) 120, 255, 393, 624, 876
FriOI GRGCYC 1 cut(s) 620
Fsp4HI GCNGC 2 cut(s) 662, 665
FspBI CTAG 2 cut(s) 273, 894
GluI GCNGC 2 cut(s) 662, 665
GsuI CTGGAG 2 cut(s) 84, 900
HaeIII GGCC 5 cut(s) 99, 630, 740, 822, 942
HapII CCGG 5 cut(s) 500, 608, 716, 754, 956
Hin1II CATG 3 cut(s) 123, 258, 847
HinfI GANTC 2 cut(s) 29, 931
HpaII CCGG 5 cut(s) 500, 608, 716, 754, 956
HphI GGTGA 2 cut(s) 866, 970
Hpy166II GTNNAC 1 cut(s) 713
Hpy188I TCNGA 3 cut(s) 92, 248, 655
Hpy188III TCNNGA 5 cut(s) 53, 522, 726, 809, 917
Hpy8I GTNNAC 1 cut(s) 713
HpyAV CCTTC 2 cut(s) 169, 953
HpyCH4III ACNGT 2 cut(s) 463, 626
HpyCH4IV ACGT 1 cut(s) 709
HpyCH4V TGCA 8 cut(s) 167, 240, 258, 353, 378, 386, 785, 790
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 636
HpyF3I CTNAG 4 cut(s) 54, 316, 588, 810
HpySE526I ACGT 1 cut(s) 709
Hsp92II CATG 3 cut(s) 123, 258, 847
Kzo9I GATC 2 cut(s) 20, 728
LmnI GCTCC 7 cut(s) 248, 577, 615, 644, 767, 898, 919
Lsp1109I GCAGC 2 cut(s) 673, 676
LweI GCATC 1 cut(s) 536
MabI ACCWGGT 1 cut(s) 481
MaeI CTAG 2 cut(s) 273, 894
MaeII ACGT 1 cut(s) 709
MaeIII GTNAC 2 cut(s) 508, 962
MalI GATC 2 cut(s) 22, 730
MboI GATC 2 cut(s) 20, 728
MboII GAAGA 4 cut(s) 238, 309, 738, 859
MflI RGATCY 1 cut(s) 728
MhlI GDGCHC 1 cut(s) 620
MlsI TGGCCA 2 cut(s) 630, 822
MluCI AATT 6 cut(s) 13, 195, 288, 398, 721, 906
MluNI TGGCCA 2 cut(s) 630, 822
MlyI GAGTC 1 cut(s) 940
MmeI TCCRAC 1 cut(s) 497
MnlI CCTC 7 cut(s) 110, 147, 497, 585, 597, 649, 786
Mox20I TGGCCA 2 cut(s) 630, 822
Mph1103I ATGCAT 1 cut(s) 787
MscI TGGCCA 2 cut(s) 630, 822
MseI TTAA 3 cut(s) 308, 437, 905
Msp20I TGGCCA 2 cut(s) 630, 822
MspI CCGG 5 cut(s) 500, 608, 716, 754, 956
MspR9I CCNGG 8 cut(s) 42, 483, 500, 501, 608, 609, 632, 819
Mva1269I GAATGC 1 cut(s) 215
MvaI CCWGG 4 cut(s) 42, 483, 632, 819
MvnI CGCG 1 cut(s) 547
MwoI GCNNNNNNNGC 2 cut(s) 290, 636
NciI CCSGG 4 cut(s) 500, 501, 608, 609
NdeII GATC 2 cut(s) 20, 728
NlaIII CATG 3 cut(s) 123, 258, 847
NlaIV GGNNCC 7 cut(s) 39, 46, 617, 640, 739, 763, 884
NsiI ATGCAT 1 cut(s) 787
NspI RCATGY 2 cut(s) 123, 258
PceI AGGCCT 2 cut(s) 99, 942
PciI ACATGT 1 cut(s) 119
PctI GAATGC 1 cut(s) 215
PfeI GAWTC 1 cut(s) 29
PflMI CCANNNNNTGG 1 cut(s) 626
PinAI ACCGGT 2 cut(s) 753, 955
PkrI GCNGC 2 cut(s) 663, 666
PleI GAGTC 1 cut(s) 939
PpsI GAGTC 1 cut(s) 939
PscI ACATGT 1 cut(s) 119
PshBI ATTAAT 1 cut(s) 905
Psp6I CCWGG 4 cut(s) 40, 481, 630, 817
PspGI CCWGG 4 cut(s) 40, 481, 630, 817
PspN4I GGNNCC 7 cut(s) 39, 46, 617, 640, 739, 763, 884
PspPI GGNCC 3 cut(s) 44, 557, 738
PsuI RGATCY 1 cut(s) 728
SaqAI TTAA 3 cut(s) 308, 437, 905
SatI GCNGC 2 cut(s) 662, 665
Sau3AI GATC 2 cut(s) 20, 728
Sau96I GGNCC 3 cut(s) 44, 557, 738
SchI GAGTC 1 cut(s) 940
ScrFI CCNGG 8 cut(s) 42, 483, 500, 501, 608, 609, 632, 819
SduI GDGCHC 1 cut(s) 620
SexAI ACCWGGT 1 cut(s) 481
SfaNI GCATC 1 cut(s) 536
SfcI CTRYAG 2 cut(s) 103, 771
SinI GGWCC 2 cut(s) 44, 557
SmaI CCCGGG 2 cut(s) 501, 609
SmlI CTYRAG 1 cut(s) 732
SmoI CTYRAG 1 cut(s) 732
Sse9I AATT 6 cut(s) 13, 195, 288, 398, 721, 906
SseBI AGGCCT 2 cut(s) 99, 942
SsiI CCGC 2 cut(s) 545, 872
SspMI CTAG 2 cut(s) 273, 894
StuI AGGCCT 2 cut(s) 99, 942
StyD4I CCNGG 8 cut(s) 40, 481, 498, 499, 606, 607, 630, 817
StyI CCWWGG 1 cut(s) 893
TaaI ACNGT 2 cut(s) 463, 626
TaiI ACGT 1 cut(s) 712
TaqI TCGA 1 cut(s) 331
TaqII GACCGA 1 cut(s) 349
TasI AATT 6 cut(s) 13, 195, 288, 398, 721, 906
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 3 cut(s) 308, 437, 905
Tru9I TTAA 3 cut(s) 308, 437, 905
TscAI CASTG 2 cut(s) 169, 631
TseI GCWGC 2 cut(s) 661, 664
TspDTI ATGAA 6 cut(s) 26, 188, 254, 423, 738, 860
TspMI CCCGGG 2 cut(s) 499, 607
TspRI CASTG 2 cut(s) 169, 631
Van91I CCANNNNNTGG 1 cut(s) 626
VpaK11BI GGWCC 2 cut(s) 44, 557
VspI ATTAAT 1 cut(s) 905
XapI RAATTY 3 cut(s) 13, 398, 721
XceI RCATGY 2 cut(s) 123, 258
XmaI CCCGGG 2 cut(s) 499, 607
XmaJI CCTAGG 1 cut(s) 893
XspI CTAG 2 cut(s) 273, 894
Zsp2I ATGCAT 1 cut(s) 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.