Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8476507.1

Orthogroup ID

OG0011471

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1553

Gene Structure 1553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8476507.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

aatgagattgaatgtgcatattatttacgaactggacaatgcaagtttgcaagcacttgtaaattccaccatccacaacctactaatatgatggtttcgctaagtggttctcctgtatatcctactgttcaatctccaactacacctggtcagcagtcatacccgggaggagttacgaactggtcaagagcatcttttattcccagtccgcgttggcaaggtccatcaagttatgctcctcttattgttcctcagggagtggtatcagtcccaggatggagcccatacagtggccaggtcggctcaatttcaacttcagaggggcagcagcaaacgataggaagtagtcaggtttatggaactccacgccaacgtgaaccggaaaattcaggatctcaaggggccttttcttcatatcggtctggctccattcctgtagggttctatgcattgcagagggaaaatgtatttcctgagagacctggacaaccagagtgccagttttacatgaagacaggtgattgtaagtttggtgcggtttgtaggttccatcatcctagggagcgattaattcctgctccagattgtgttttgagtccaataggccttcctttgcgaccgggagaacctttgtgcatcttttattctcgttatggtatctgtaagtttggtccgagttgcaagtttgaccaccctatgggtatcttcacttataacctttctgcttcatcttcggctgagagccctgcgcggcgtttgttggggtcgacatcaggcaccacttcattaaatttatcatcagaaggtctagttgaagcaggatcaacaaagccaaggagactttcactatcagagcctaggcagatgccttctgcggatgaaaatattgacacagaggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010313 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016787 GO:0016788 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048027 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

300

Amino Acids

32.61

Weight (kDa)

8.32

Isoelectric Point (pI)

67.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02830 AT3G02830
fragaria_vesca	FvH4_6g00570 FvH4_6g00570
malus_domestica	MD04G1244100.v1.1 MD12G1259900.v1.1
prunus_persica	Prupe.6G360600_v2.0.a1
pyrus_communis	pycom04g21500 pycom12g23800
rosa_chinensis	RchiOBHm_Chr3g0447961
rosa_laevigata	RLG00000025957
rosa_multiflora	Rmu_co8476507.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426150
rosa_rugosa	Rorug02G0607300 Rorug02G0607400
rosa_samantha	Rh3AG006600 Rh3BG006300 Rh3CG006500 Rh3DG006900
rosa_wichuraiana	Rw3G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	714
AccB1I	GGYRCC	1 cut(s)	776
AccB7I	CCANNNNNTGG	2 cut(s)	290, 697
AccI	GTMKAC	1 cut(s)	767
AccII	CGCG	2 cut(s)	211, 751
AciI	CCGC	4 cut(s)	209, 536, 751, 875
AclWI	GGATC	2 cut(s)	400, 829
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	3 cut(s)	62, 385, 790
AcuI	CTGAAG	1 cut(s)	300
AfiI	CCNNNNNNNGG	2 cut(s)	290, 697
AgsI	TTSAA	4 cut(s)	11, 131, 312, 815
AjnI	CCWGG	4 cut(s)	145, 271, 294, 481
AjuI	GAANNNNNNNTTGG	2 cut(s)	826, 858
Alw26I	GTCTC	2 cut(s)	472, 832
AlwI	GGATC	2 cut(s)	400, 829
Ama87I	CYCGRG	1 cut(s)	163
AoxI	GGCC	3 cut(s)	292, 402, 604
ApeKI	GCWGC	2 cut(s)	325, 328
ApoI	RAATTY	3 cut(s)	62, 385, 790
AseI	ATTAAT	1 cut(s)	569
AspA2I	CCTAGG	2 cut(s)	557, 857
AspLEI	GCGC	1 cut(s)	751
AspS9I	GGNCC	3 cut(s)	221, 402, 671
AsuC2I	CCSGG	3 cut(s)	164, 165, 621
AsuHPI	GGTGA	1 cut(s)	530
AvaI	CYCGRG	1 cut(s)	163
AvaII	GGWCC	2 cut(s)	221, 671
AvrII	CCTAGG	2 cut(s)	557, 857
AxyI	CCTNAGG	1 cut(s)	252
BalI	TGGCCA	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	776
BanII	GRGCYC	2 cut(s)	284, 746
BbsI	GAAGAC	1 cut(s)	518
BbvI	GCAGC	2 cut(s)	337, 340
BccI	CCATC	5 cut(s)	78, 85, 232, 270, 558
BciT130I	CCWGG	4 cut(s)	147, 273, 296, 483
BcnI	CCSGG	3 cut(s)	164, 165, 621
BcoDI	GTCTC	2 cut(s)	472, 832
BfaI	CTAG	3 cut(s)	558, 809, 858
BfmI	CTRYAG	1 cut(s)	435
BglI	GCCNNNNNGGC	1 cut(s)	300
BisI	GCNGC	3 cut(s)	326, 329, 752
BlnI	CCTAGG	2 cut(s)	557, 857
BlsI	GCNGC	3 cut(s)	327, 330, 753
Bme1390I	CCNGG	7 cut(s)	147, 164, 165, 273, 296, 483, 621
Bme18I	GGWCC	2 cut(s)	221, 671
BmeT110I	CYCGRG	1 cut(s)	163
BmgT120I	GGNCC	3 cut(s)	221, 402, 671
BmiI	GGNNCC	5 cut(s)	281, 403, 427, 548, 778
BmrFI	CCNGG	7 cut(s)	147, 164, 165, 273, 296, 483, 621
BmrI	ACTGGG	1 cut(s)	198
BmsI	GCATC	3 cut(s)	200, 645, 855
BmuI	ACTGGG	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	518
BpmI	CTGGAG	1 cut(s)	564
BpuEI	CTTGAG	1 cut(s)	381
BpuMI	CCSGG	3 cut(s)	164, 165, 621
BsaI	GGTCTC	1 cut(s)	472
BsaJI	CCNNGG	5 cut(s)	163, 271, 557, 833, 857
BsaWI	WCCGGW	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 697
Bse1I	ACTGG	4 cut(s)	37, 185, 204, 499
Bse21I	CCTNAGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	449
BseBI	CCWGG	4 cut(s)	147, 273, 296, 483
BseDI	CCNNGG	5 cut(s)	163, 271, 557, 833, 857
BseGI	GGATG	4 cut(s)	70, 281, 553, 883
BseLI	CCNNNNNNNGG	2 cut(s)	290, 697
BseMI	GCAATG	1 cut(s)	449
BseMII	CTCAG	3 cut(s)	266, 465, 729
BseNI	ACTGG	4 cut(s)	37, 185, 204, 499
BseRI	GAGGAG	2 cut(s)	183, 228
BseXI	GCAGC	2 cut(s)	337, 340
Bsh1236I	CGCG	2 cut(s)	211, 751
Bsh1285I	CGRYCG	1 cut(s)	620
BshFI	GGCC	3 cut(s)	294, 404, 606
BshNI	GGYRCC	1 cut(s)	776
BsiEI	CGRYCG	1 cut(s)	620
BsiHKCI	CYCGRG	1 cut(s)	163
BsiSI	CCGG	3 cut(s)	164, 380, 620
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	2 cut(s)	290, 697
BsmAI	GTCTC	2 cut(s)	472, 832
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	3 cut(s)	294, 404, 606
Bso31I	GGTCTC	1 cut(s)	472
BsoBI	CYCGRG	1 cut(s)	163
Bsp1286I	GDGCHC	2 cut(s)	284, 746
Bsp143I	GATC	2 cut(s)	392, 821
BspACI	CCGC	4 cut(s)	209, 536, 751, 875
BspANI	GGCC	3 cut(s)	294, 404, 606
BspCNI	CTCAG	3 cut(s)	265, 466, 730
BspFNI	CGCG	2 cut(s)	211, 751
BspLI	GGNNCC	5 cut(s)	281, 403, 427, 548, 778
BspPI	GGATC	2 cut(s)	400, 829
BspT107I	GGYRCC	1 cut(s)	776
BspTNI	GGTCTC	1 cut(s)	472
BsrDI	GCAATG	1 cut(s)	449
BsrI	ACTGG	4 cut(s)	37, 185, 204, 499
BssECI	CCNNGG	5 cut(s)	163, 271, 557, 833, 857
BssMI	GATC	2 cut(s)	392, 821
BssT1I	CCWWGG	3 cut(s)	557, 833, 857
Bst2UI	CCWGG	4 cut(s)	147, 273, 296, 483
Bst4CI	ACNGT	2 cut(s)	127, 290
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	4 cut(s)	101, 252, 474, 738
BstF5I	GGATG	4 cut(s)	70, 281, 553, 883
BstFNI	CGCG	2 cut(s)	211, 751
BstHHI	GCGC	1 cut(s)	751
BstKTI	GATC	2 cut(s)	395, 824
BstMAI	GTCTC	2 cut(s)	472, 832
BstMBI	GATC	2 cut(s)	392, 821
BstMCI	CGRYCG	1 cut(s)	620
BstMWI	GCNNNNNNNGC	1 cut(s)	300
BstNI	CCWGG	4 cut(s)	147, 273, 296, 483
BstSCI	CCNGG	7 cut(s)	145, 162, 163, 271, 294, 481, 619
BstSFI	CTRYAG	1 cut(s)	435
BstUI	CGCG	2 cut(s)	211, 751
BstV1I	GCAGC	2 cut(s)	337, 340
BstV2I	GAAGAC	1 cut(s)	518
BstX2I	RGATCY	1 cut(s)	392
BstYI	RGATCY	1 cut(s)	392
Bsu36I	CCTNAGG	1 cut(s)	252
BsuRI	GGCC	3 cut(s)	294, 404, 606
BtsCI	GGATG	4 cut(s)	70, 281, 553, 883
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	1 cut(s)	52
CfoI	GCGC	1 cut(s)	751
Cfr13I	GGNCC	3 cut(s)	221, 402, 671
Cfr9I	CCCGGG	1 cut(s)	163
CsiI	ACCWGGT	1 cut(s)	145
CviAII	CATG	1 cut(s)	508
DdeI	CTNAG	4 cut(s)	101, 252, 474, 738
DpnI	GATC	2 cut(s)	394, 823
DpnII	GATC	2 cut(s)	392, 821
EaeI	YGGCCR	1 cut(s)	292
Eco130I	CCWWGG	3 cut(s)	557, 833, 857
Eco147I	AGGCCT	1 cut(s)	606
Eco24I	GRGCYC	2 cut(s)	284, 746
Eco31I	GGTCTC	1 cut(s)	472
Eco47I	GGWCC	2 cut(s)	221, 671
Eco57I	CTGAAG	1 cut(s)	300
Eco81I	CCTNAGG	1 cut(s)	252
Eco88I	CYCGRG	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	402
EcoRII	CCWGG	4 cut(s)	145, 271, 294, 481
EcoT14I	CCWWGG	3 cut(s)	557, 833, 857
EcoT22I	ATGCAT	1 cut(s)	451
EcoT38I	GRGCYC	2 cut(s)	284, 746
ErhI	CCWWGG	3 cut(s)	557, 833, 857
FaeI	CATG	1 cut(s)	511
FalI	AAGNNNNNCTT	2 cut(s)	178, 210
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	1 cut(s)	507
FblI	GTMKAC	1 cut(s)	767
Fnu4HI	GCNGC	3 cut(s)	326, 329, 752
FokI	GGATG	4 cut(s)	57, 288, 540, 890
FriOI	GRGCYC	2 cut(s)	284, 746
Fsp4HI	GCNGC	3 cut(s)	326, 329, 752
FspBI	CTAG	3 cut(s)	558, 809, 858
GlaI	GCGC	1 cut(s)	750
GluI	GCNGC	3 cut(s)	326, 329, 752
GsuI	CTGGAG	1 cut(s)	564
HaeIII	GGCC	3 cut(s)	294, 404, 606
HapII	CCGG	3 cut(s)	164, 380, 620
HhaI	GCGC	1 cut(s)	751
Hin1II	CATG	1 cut(s)	511
Hin6I	GCGC	1 cut(s)	749
HinP1I	GCGC	1 cut(s)	749
HincII	GTYRAC	1 cut(s)	768
HindII	GTYRAC	1 cut(s)	768
HinfI	GANTC	1 cut(s)	595
HpaII	CCGG	3 cut(s)	164, 380, 620
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	2 cut(s)	377, 768
Hpy188I	TCNGA	4 cut(s)	319, 675, 802, 853
Hpy188III	TCNNGA	4 cut(s)	186, 390, 473, 581
Hpy8I	GTNNAC	2 cut(s)	377, 768
HpyAV	CCTTC	3 cut(s)	617, 797, 879
HpyCH4III	ACNGT	2 cut(s)	127, 290
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	7 cut(s)	17, 42, 50, 449, 454, 636, 681
HpyF10VI	GCNNNNNNNGC	1 cut(s)	300
HpyF3I	CTNAG	4 cut(s)	101, 252, 474, 738
HpySE526I	ACGT	1 cut(s)	373
Hsp92II	CATG	1 cut(s)	511
HspAI	GCGC	1 cut(s)	749
Kzo9I	GATC	2 cut(s)	392, 821
LmnI	GCTCC	5 cut(s)	241, 279, 431, 562, 583
Lsp1109I	GCAGC	2 cut(s)	337, 340
LweI	GCATC	3 cut(s)	200, 645, 855
MabI	ACCWGGT	1 cut(s)	145
MaeI	CTAG	3 cut(s)	558, 809, 858
MaeII	ACGT	1 cut(s)	373
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	2 cut(s)	394, 823
MboI	GATC	2 cut(s)	392, 821
MboII	GAAGA	4 cut(s)	402, 523, 697, 723
MflI	RGATCY	1 cut(s)	392
MhlI	GDGCHC	2 cut(s)	284, 746
MlsI	TGGCCA	1 cut(s)	294
MluCI	AATT	5 cut(s)	62, 306, 385, 570, 790
MluNI	TGGCCA	1 cut(s)	294
MlyI	GAGTC	1 cut(s)	604
MmeI	TCCRAC	1 cut(s)	161
MnlI	CCTC	6 cut(s)	161, 249, 261, 313, 450, 889
Mox20I	TGGCCA	1 cut(s)	294
Mph1103I	ATGCAT	1 cut(s)	451
MscI	TGGCCA	1 cut(s)	294
MseI	TTAA	2 cut(s)	569, 788
Msp20I	TGGCCA	1 cut(s)	294
MspI	CCGG	3 cut(s)	164, 380, 620
MspR9I	CCNGG	7 cut(s)	147, 164, 165, 273, 296, 483, 621
MvaI	CCWGG	4 cut(s)	147, 273, 296, 483
MvnI	CGCG	2 cut(s)	211, 751
MwoI	GCNNNNNNNGC	1 cut(s)	300
NciI	CCSGG	3 cut(s)	164, 165, 621
NdeII	GATC	2 cut(s)	392, 821
NlaIII	CATG	1 cut(s)	511
NlaIV	GGNNCC	5 cut(s)	281, 403, 427, 548, 778
NsiI	ATGCAT	1 cut(s)	451
PceI	AGGCCT	1 cut(s)	606
PflMI	CCANNNNNTGG	2 cut(s)	290, 697
PkrI	GCNGC	3 cut(s)	327, 330, 753
PleI	GAGTC	1 cut(s)	603
PpsI	GAGTC	1 cut(s)	603
PshBI	ATTAAT	1 cut(s)	569
PsiI	TTATAA	1 cut(s)	714
Psp6I	CCWGG	4 cut(s)	145, 271, 294, 481
PspGI	CCWGG	4 cut(s)	145, 271, 294, 481
PspN4I	GGNNCC	5 cut(s)	281, 403, 427, 548, 778
PspPI	GGNCC	3 cut(s)	221, 402, 671
PsuI	RGATCY	1 cut(s)	392
SalI	GTCGAC	1 cut(s)	766
SaqAI	TTAA	2 cut(s)	569, 788
SatI	GCNGC	3 cut(s)	326, 329, 752
Sau3AI	GATC	2 cut(s)	392, 821
Sau96I	GGNCC	3 cut(s)	221, 402, 671
SchI	GAGTC	1 cut(s)	604
ScrFI	CCNGG	7 cut(s)	147, 164, 165, 273, 296, 483, 621
SduI	GDGCHC	2 cut(s)	284, 746
SexAI	ACCWGGT	1 cut(s)	145
SfaNI	GCATC	3 cut(s)	200, 645, 855
SfcI	CTRYAG	1 cut(s)	435
SinI	GGWCC	2 cut(s)	221, 671
SmaI	CCCGGG	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	396
SmoI	CTYRAG	1 cut(s)	396
Sse9I	AATT	5 cut(s)	62, 306, 385, 570, 790
SseBI	AGGCCT	1 cut(s)	606
SsiI	CCGC	4 cut(s)	209, 536, 751, 875
SspI	AATATT	1 cut(s)	886
SspMI	CTAG	3 cut(s)	558, 809, 858
StuI	AGGCCT	1 cut(s)	606
StyD4I	CCNGG	7 cut(s)	145, 162, 163, 271, 294, 481, 619
StyI	CCWWGG	3 cut(s)	557, 833, 857
TaaI	ACNGT	2 cut(s)	127, 290
TaiI	ACGT	1 cut(s)	376
TaqI	TCGA	1 cut(s)	767
TaqII	GACCGA	1 cut(s)	408
TasI	AATT	5 cut(s)	62, 306, 385, 570, 790
TauI	GCSGC	1 cut(s)	754
Tru1I	TTAA	2 cut(s)	569, 788
Tru9I	TTAA	2 cut(s)	569, 788
TscAI	CASTG	1 cut(s)	295
TseI	GCWGC	2 cut(s)	325, 328
TspDTI	ATGAA	5 cut(s)	402, 524, 717, 774, 894
TspMI	CCCGGG	1 cut(s)	163
TspRI	CASTG	1 cut(s)	295
Van91I	CCANNNNNTGG	2 cut(s)	290, 697
VpaK11BI	GGWCC	2 cut(s)	221, 671
VspI	ATTAAT	1 cut(s)	569
XapI	RAATTY	3 cut(s)	62, 385, 790
XmaI	CCCGGG	1 cut(s)	163
XmaJI	CCTAGG	2 cut(s)	557, 857
XmiI	GTMKAC	1 cut(s)	767
XspI	CTAG	3 cut(s)	558, 809, 858
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.