Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009329

Physical Location & Seq

Genomic Coordinates Forward (+)

72459203 .. 72463071

Gene Structure 3869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0607300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGTCGAAGCCCAGGGTCACCATCACCCTCGGTCGCTCTGGTCAGGTTGTGGAGAGGGGAGGGACATCAGACTCTGTAAATATGCGTGGCGAAAGAGCTATGGTTTCGGGAGGTAAACGATCAATGGGAGACAGGCTTGGGAGTAATGCTTATGGAAAGCGGCAACGAGGAGATGGAATAAAATGGAGAGGGGGTGACGATACATTACATGATTCACAAATCAGTCGAAATGACCTCAGATTGAAACTGTTGCGCAAAAGATCATTTAAGCAAAATGGGGGAGTTGCAGAACGCAAGCAGATGCTCCCGCGCCCAAAGCTGTCAAAACCTGCTCATTCTGCAGTGAGGTATCAGATGCCACGGCACAAGTCAGAAACAAATGAGAGTAGCTTCCTGAGGCAAATTCCTCCCAGGGAAGCTGCAGCTGATTTGTATCATGTAAATCCACAGAGGAACTTCAACTCTTCTCAAAGTAGAGAAGGATTCCGAGCTAGATCCCCCGATAACTTTGTGAACACTTCTTATGGGCCATCACCTCAAAGAAACTCCTTCAGGGCAGCTGACGCTCCTAGAGCTGGCCAGTTCCTGAGAAATGGTATGGTTGGTTCGTCTCAGCCAACAGATTCCTTCCTTTTCAGAACAAAATCTAACCCTCAAACTGCCAAGCCAGCTGGACAGCTTGTGCCAATAAATTACAGCATGCAAAAAGTCCCTTATATGGAGGAGGAACCTCCAAGTGTTGCTAGTTTATTGCATAGACTTGGTTTGGGCAAATATGCTATTATTTTCCAGGCTGAAGAAGTGGACATAGGTACTCTGAAGCAGATGGGGGATAAGGACCTTAAAGAGCTGGGTATACCAATGGGGCCAAGGAAAAAGATTCTTCTTGCGCTTTTGGCCCGCGGTAAACGACCGCCGCCACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010313 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016787 GO:0016788 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048027 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

308

Amino Acids

34.25

Weight (kDa)

10.79

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	244 - 298	2.4e-12	SAM domain (Sterile alpha motif)
SAM_2	PF07647	244 - 297	4.7e-08	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36290 AT5G36290
fragaria_vesca	FvH4_6g00560
malus_domestica	MD04G1244200.v1.1 MD12G1260000.v1.1
prunus_persica	Prupe.6G360700_v2.0.a1 Prupe.6G360700_v2.0.a1
pyrus_communis	pycom04g21510 pycom12g23810
rosa_chinensis	RchiOBHm_Chr3g0447951
rosa_laevigata	RLG00000025958
rosa_multiflora	Rmu_sc0005969.1_g000006 Rmu_sc0033046.1_g000001 Rmu_sc0039980.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426140
rosa_rugosa	Rorug01G0061500.1 Rorug02G0607300
rosa_samantha	Rh1BG063200 Rh3BG006200 Rh3CG006400 Rh3DG006800
rosa_wichuraiana	Rw3G000520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	337
AccI	GTMKAC	1 cut(s)	856
AccII	CGCG	2 cut(s)	310, 903
AciI	CCGC	6 cut(s)	160, 308, 901, 903, 914, 917
AclWI	GGATC	1 cut(s)	489
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	1 cut(s)	402
AcuI	CTGAAG	3 cut(s)	535, 816, 839
AfaI	GTAC	1 cut(s)	814
AfiI	CCNNNNNNNGG	2 cut(s)	575, 718
AgsI	TTSAA	2 cut(s)	244, 460
AjnI	CCWGG	3 cut(s)	11, 410, 789
Alw26I	GTCTC	2 cut(s)	123, 615
AlwI	GGATC	1 cut(s)	489
AlwNI	CAGNNNCTG	2 cut(s)	74, 586
AoxI	GGCC	4 cut(s)	527, 577, 866, 897
ApeKI	GCWGC	3 cut(s)	419, 422, 557
ApoI	RAATTY	1 cut(s)	402
AspLEI	GCGC	3 cut(s)	255, 312, 892
AspS9I	GGNCC	4 cut(s)	527, 838, 866, 898
AsuHPI	GGTGA	4 cut(s)	10, 16, 206, 525
AvaII	GGWCC	1 cut(s)	838
AxyI	CCTNAGG	1 cut(s)	395
BalI	TGGCCA	1 cut(s)	579
BbvI	GCAGC	3 cut(s)	406, 434, 569
BccI	CCATC	4 cut(s)	29, 167, 538, 820
BceAI	ACGGC	1 cut(s)	377
BciT130I	CCWGG	3 cut(s)	13, 412, 791
BcoDI	GTCTC	2 cut(s)	123, 615
BfaI	CTAG	3 cut(s)	492, 570, 744
BfmI	CTRYAG	2 cut(s)	339, 420
BfuAI	ACCTGC	1 cut(s)	337
BisI	GCNGC	5 cut(s)	161, 420, 423, 558, 917
BlsI	GCNGC	5 cut(s)	162, 421, 424, 559, 918
Bme1390I	CCNGG	3 cut(s)	13, 412, 791
Bme18I	GGWCC	1 cut(s)	838
BmgT120I	GGNCC	4 cut(s)	527, 838, 866, 898
BmiI	GGNNCC	2 cut(s)	729, 867
BmrFI	CCNGG	3 cut(s)	13, 412, 791
BmsI	GCATC	2 cut(s)	291, 345
BsaBI	GATNNNNATC	1 cut(s)	432
BsaJI	CCNNGG	8 cut(s)	11, 12, 28, 359, 410, 411, 869, 901
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bsc4I	CCNNNNNNNGG	2 cut(s)	575, 718
Bse1I	ACTGG	1 cut(s)	580
Bse21I	CCTNAGG	1 cut(s)	395
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	3 cut(s)	13, 412, 791
BseDI	CCNNGG	8 cut(s)	11, 12, 28, 359, 410, 411, 869, 901
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	2 cut(s)	575, 718
BseMII	CTCAG	4 cut(s)	250, 386, 578, 626
BseNI	ACTGG	1 cut(s)	580
BseRI	GAGGAG	2 cut(s)	183, 737
BseXI	GCAGC	3 cut(s)	406, 434, 569
BseYI	CCCAGC	1 cut(s)	850
Bsh1236I	CGCG	2 cut(s)	310, 903
Bsh1285I	CGRYCG	2 cut(s)	34, 914
BshFI	GGCC	4 cut(s)	529, 579, 868, 899
BsiEI	CGRYCG	2 cut(s)	34, 914
BslFI	GGGAC	2 cut(s)	76, 695
BslI	CCNNNNNNNGG	2 cut(s)	575, 718
BsmAI	GTCTC	2 cut(s)	123, 615
BsmBI	CGTCTC	1 cut(s)	615
BsmFI	GGGAC	2 cut(s)	76, 695
BsnI	GGCC	4 cut(s)	529, 579, 868, 899
Bsp143I	GATC	3 cut(s)	119, 260, 494
BspACI	CCGC	6 cut(s)	160, 308, 901, 903, 914, 917
BspANI	GGCC	4 cut(s)	529, 579, 868, 899
BspCNI	CTCAG	4 cut(s)	249, 387, 579, 625
BspFNI	CGCG	2 cut(s)	310, 903
BspLI	GGNNCC	2 cut(s)	729, 867
BspMAI	CTGCAG	2 cut(s)	343, 424
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	1 cut(s)	489
BsrI	ACTGG	1 cut(s)	580
BssECI	CCNNGG	8 cut(s)	11, 12, 28, 359, 410, 411, 869, 901
BssMI	GATC	3 cut(s)	119, 260, 494
BssNAI	GTATAC	1 cut(s)	857
BssT1I	CCWWGG	1 cut(s)	869
Bst1107I	GTATAC	1 cut(s)	857
Bst2UI	CCWGG	3 cut(s)	13, 412, 791
Bst4CI	ACNGT	2 cut(s)	249, 924
Bst6I	CTCTTC	1 cut(s)	469
BstC8I	GCNNGC	5 cut(s)	296, 577, 669, 701, 901
BstDEI	CTNAG	4 cut(s)	236, 395, 587, 612
BstDSI	CCRYGG	2 cut(s)	359, 901
BstEII	GGTNACC	1 cut(s)	16
BstFNI	CGCG	2 cut(s)	310, 903
BstHHI	GCGC	3 cut(s)	255, 312, 892
BstKTI	GATC	3 cut(s)	122, 263, 497
BstMAI	GTCTC	2 cut(s)	123, 615
BstMBI	GATC	3 cut(s)	119, 260, 494
BstMCI	CGRYCG	2 cut(s)	34, 914
BstMWI	GCNNNNNNNGC	6 cut(s)	316, 338, 563, 572, 668, 896
BstNI	CCWGG	3 cut(s)	13, 412, 791
BstNSI	RCATGY	1 cut(s)	703
BstPI	GGTNACC	1 cut(s)	16
BstSCI	CCNGG	3 cut(s)	11, 410, 789
BstSFI	CTRYAG	2 cut(s)	339, 420
BstUI	CGCG	2 cut(s)	310, 903
BstV1I	GCAGC	3 cut(s)	406, 434, 569
BstX2I	RGATCY	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	494
BstZ17I	GTATAC	1 cut(s)	857
Bsu36I	CCTNAGG	1 cut(s)	395
BsuRI	GGCC	4 cut(s)	529, 579, 868, 899
BtgI	CCRYGG	2 cut(s)	359, 901
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	348
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	5 cut(s)	296, 577, 669, 701, 901
CaiI	CAGNNNCTG	2 cut(s)	74, 586
CfoI	GCGC	3 cut(s)	255, 312, 892
Cfr13I	GGNCC	4 cut(s)	527, 838, 866, 898
Cfr42I	CCGCGG	1 cut(s)	904
CseI	GACGC	1 cut(s)	572
Csp6I	GTAC	1 cut(s)	813
CviAII	CATG	3 cut(s)	209, 437, 700
CviQI	GTAC	1 cut(s)	813
DdeI	CTNAG	4 cut(s)	236, 395, 587, 612
DpnI	GATC	3 cut(s)	121, 262, 496
DpnII	GATC	3 cut(s)	119, 260, 494
EaeI	YGGCCR	1 cut(s)	577
Eam1104I	CTCTTC	1 cut(s)	469
EarI	CTCTTC	1 cut(s)	469
Eco130I	CCWWGG	1 cut(s)	869
Eco47I	GGWCC	1 cut(s)	838
Eco57I	CTGAAG	3 cut(s)	535, 816, 839
Eco81I	CCTNAGG	1 cut(s)	395
Eco91I	GGTNACC	1 cut(s)	16
EcoO109I	RGGNCCY	1 cut(s)	838
EcoO65I	GGTNACC	1 cut(s)	16
EcoRII	CCWGG	3 cut(s)	11, 410, 789
EcoT14I	CCWWGG	1 cut(s)	869
ErhI	CCWWGG	1 cut(s)	869
Esp3I	CGTCTC	1 cut(s)	615
FaeI	CATG	3 cut(s)	212, 440, 703
FaqI	GGGAC	2 cut(s)	76, 695
FatI	CATG	3 cut(s)	208, 436, 699
FauI	CCCGC	2 cut(s)	315, 908
FblI	GTMKAC	1 cut(s)	856
Fnu4HI	GCNGC	5 cut(s)	161, 420, 423, 558, 917
Fsp4HI	GCNGC	5 cut(s)	161, 420, 423, 558, 917
FspBI	CTAG	3 cut(s)	492, 570, 744
FspI	TGCGCA	1 cut(s)	254
GlaI	GCGC	3 cut(s)	254, 311, 891
GluI	GCNGC	5 cut(s)	161, 420, 423, 558, 917
GsaI	CCCAGC	1 cut(s)	854
HaeIII	GGCC	4 cut(s)	529, 579, 868, 899
HgaI	GACGC	1 cut(s)	572
HhaI	GCGC	3 cut(s)	255, 312, 892
Hin1II	CATG	3 cut(s)	212, 440, 703
Hin6I	GCGC	3 cut(s)	253, 310, 890
HinP1I	GCGC	3 cut(s)	253, 310, 890
HinfI	GANTC	5 cut(s)	71, 212, 483, 623, 880
HphI	GGTGA	4 cut(s)	10, 16, 206, 525
Hpy166II	GTNNAC	5 cut(s)	116, 514, 805, 857, 908
Hpy188I	TCNGA	7 cut(s)	70, 239, 354, 373, 488, 638, 819
Hpy188III	TCNNGA	3 cut(s)	108, 394, 586
Hpy8I	GTNNAC	5 cut(s)	116, 514, 805, 857, 908
HpyAV	CCTTC	3 cut(s)	473, 559, 637
HpyCH4III	ACNGT	2 cut(s)	249, 924
HpyCH4V	TGCA	5 cut(s)	287, 341, 422, 703, 754
HpyF10VI	GCNNNNNNNGC	6 cut(s)	316, 338, 563, 572, 668, 896
HpyF3I	CTNAG	4 cut(s)	236, 395, 587, 612
Hsp92II	CATG	3 cut(s)	212, 440, 703
HspAI	GCGC	3 cut(s)	253, 310, 890
KspI	CCGCGG	1 cut(s)	904
Kzo9I	GATC	3 cut(s)	119, 260, 494
LmnI	GCTCC	2 cut(s)	309, 571
Lsp1109I	GCAGC	3 cut(s)	406, 434, 569
LweI	GCATC	2 cut(s)	291, 345
MaeI	CTAG	3 cut(s)	492, 570, 744
MaeIII	GTNAC	2 cut(s)	16, 194
MalI	GATC	3 cut(s)	121, 262, 496
MboI	GATC	3 cut(s)	119, 260, 494
MboII	GAAGA	3 cut(s)	456, 809, 875
MflI	RGATCY	1 cut(s)	494
MlsI	TGGCCA	1 cut(s)	579
MluCI	AATT	2 cut(s)	402, 691
MluNI	TGGCCA	1 cut(s)	579
MlyI	GAGTC	1 cut(s)	65
Mox20I	TGGCCA	1 cut(s)	579
MscI	TGGCCA	1 cut(s)	579
MseI	TTAA	2 cut(s)	267, 843
Msp20I	TGGCCA	1 cut(s)	579
MspA1I	CMGCKG	4 cut(s)	425, 560, 671, 903
MspR9I	CCNGG	3 cut(s)	13, 412, 791
MvaI	CCWGG	3 cut(s)	13, 412, 791
MvnI	CGCG	2 cut(s)	310, 903
MwoI	GCNNNNNNNGC	6 cut(s)	316, 338, 563, 572, 668, 896
NdeII	GATC	3 cut(s)	119, 260, 494
NlaIII	CATG	3 cut(s)	212, 440, 703
NlaIV	GGNNCC	2 cut(s)	729, 867
NmuCI	GTSAC	2 cut(s)	16, 194
NsbI	TGCGCA	1 cut(s)	254
NspI	RCATGY	1 cut(s)	703
PaeI	GCATGC	1 cut(s)	703
PasI	CCCWGGG	2 cut(s)	12, 411
PfeI	GAWTC	4 cut(s)	212, 483, 623, 880
PkrI	GCNGC	5 cut(s)	162, 421, 424, 559, 918
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PpuMI	RGGWCCY	1 cut(s)	838
Psp5II	RGGWCCY	1 cut(s)	838
Psp6I	CCWGG	3 cut(s)	11, 410, 789
PspEI	GGTNACC	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	850
PspGI	CCWGG	3 cut(s)	11, 410, 789
PspN4I	GGNNCC	2 cut(s)	729, 867
PspPI	GGNCC	4 cut(s)	527, 838, 866, 898
PspPPI	RGGWCCY	1 cut(s)	838
PsrI	GAACNNNNNNTAC	2 cut(s)	589, 621
PstI	CTGCAG	2 cut(s)	343, 424
PstNI	CAGNNNCTG	2 cut(s)	74, 586
PsuI	RGATCY	1 cut(s)	494
PvuII	CAGCTG	3 cut(s)	425, 560, 671
RsaI	GTAC	1 cut(s)	814
RsaNI	GTAC	1 cut(s)	813
SacII	CCGCGG	1 cut(s)	904
SaqAI	TTAA	2 cut(s)	267, 843
SatI	GCNGC	5 cut(s)	161, 420, 423, 558, 917
Sau3AI	GATC	3 cut(s)	119, 260, 494
Sau96I	GGNCC	4 cut(s)	527, 838, 866, 898
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	3 cut(s)	13, 412, 791
SfaNI	GCATC	2 cut(s)	291, 345
SfcI	CTRYAG	2 cut(s)	339, 420
Sfr303I	CCGCGG	1 cut(s)	904
SgrBI	CCGCGG	1 cut(s)	904
SinI	GGWCC	1 cut(s)	838
SphI	GCATGC	1 cut(s)	703
Sse9I	AATT	2 cut(s)	402, 691
SsiI	CCGC	6 cut(s)	160, 308, 901, 903, 914, 917
SspMI	CTAG	3 cut(s)	492, 570, 744
StyD4I	CCNGG	3 cut(s)	11, 410, 789
StyI	CCWWGG	1 cut(s)	869
TaaI	ACNGT	2 cut(s)	249, 924
TaqI	TCGA	2 cut(s)	5, 226
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	2 cut(s)	402, 691
TauI	GCSGC	2 cut(s)	163, 919
TfiI	GAWTC	4 cut(s)	212, 483, 623, 880
Tru1I	TTAA	2 cut(s)	267, 843
Tru9I	TTAA	2 cut(s)	267, 843
TscAI	CASTG	1 cut(s)	348
TseFI	GTSAC	2 cut(s)	16, 194
TseI	GCWGC	3 cut(s)	419, 422, 557
Tsp45I	GTSAC	2 cut(s)	16, 194
TspRI	CASTG	1 cut(s)	348
VpaK11BI	GGWCC	1 cut(s)	838
XapI	RAATTY	1 cut(s)	402
XceI	RCATGY	1 cut(s)	703
XmiI	GTMKAC	1 cut(s)	856
XspI	CTAG	3 cut(s)	492, 570, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.