Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009329

Physical Location & Seq

Genomic Coordinates Forward (+)

30436809 .. 30440576

Gene Structure 3768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G360700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGGTTTTCGCTCAATTCCTAGAACATTTGCGTATGCTCTCGCCCTCATTGTGCTACTCATCTTTACCGTTTCTGCTCAGGAGTCTGGGGTTGAAGCTGAGAGGGGAGATTCTAGTGGATCCAAAGATCTCGGCCGTCGTAGCAAGATTAATTTGGGCTTTCTTGAAGTTAATGCTCTTGGACGCAAGAATGAGGTTGATGCAGTTGCTCTCGGTCTCAATGTGGACTCCGGTCTTGGAATTTTCGATGCCTTTATAGCAAGCTTGTCAATGATACTAGTCAGTGAGATCGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGCGTCACCCCAGGTCAATTGTCCTATCTGGTGCACTCACTGCCTTGGTTATAATGACGGTACTTTCCACTGGACTTGGTAGGATTGTGCCAAACTTGATATCAAGGAAGCATACAAATAGTGCAGCTACAGTTCTTTATTTATTTTTTGGGCTGCGTTTGCTTTACATTGCTTGGAGATCAGATCCAAAATCGTCCCAGAAGAAAGAAATGGAAGAAGTAGAAGAGAAACTTGAGTCTGGACAGGGGAAGACAAGCTTCCGCCGTTTCTTTTCCAGGTTTTGTACACCAATCTTTTTGGAGTCATTCATTCTAACGTTTTTAGCTGAGTGGGGAGATCGTAGCCAAATAGCGACAATTGCTCTGGCAACCCACAAGAATGCACTCGGAGTAGCGGTAGGTGCGACACTAGGGCACACCATCTGCACGTCTGTGGCTGTGGTGGGAGGGAGCATGCTGGCATCCAAAATCTCCCAACGCACTGTTGCTACAGTTGGAGGCTTGCTCTTTCTATGCTTCTCCGTATCATCGTATTTTTATCCTCCTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

293

Amino Acids

31.5

Weight (kDa)

9.19

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36290 AT5G36290
fragaria_vesca	FvH4_6g00560
malus_domestica	MD04G1244200.v1.1 MD12G1260000.v1.1
prunus_persica	Prupe.6G360700_v2.0.a1 Prupe.6G360700_v2.0.a1
pyrus_communis	pycom04g21510 pycom12g23810
rosa_chinensis	RchiOBHm_Chr3g0447951
rosa_laevigata	RLG00000025958
rosa_multiflora	Rmu_sc0005969.1_g000006 Rmu_sc0033046.1_g000001 Rmu_sc0039980.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426140
rosa_rugosa	Rorug01G0061500.1 Rorug02G0607300
rosa_samantha	Rh1BG063200 Rh3BG006200 Rh3CG006400 Rh3DG006800
rosa_wichuraiana	Rw3G000520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	308, 380
AciI	CCGC	2 cut(s)	589, 722
AclI	AACGTT	1 cut(s)	644
AclWI	GGATC	3 cut(s)	114, 127, 506
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	240
AfaI	GTAC	2 cut(s)	390, 613
AgsI	TTSAA	2 cut(s)	95, 167
AhlI	ACTAGT	1 cut(s)	277
AjiI	CACGTC	1 cut(s)	756
AjnI	CCWGG	2 cut(s)	338, 602
AleI	CACNNNNGTG	1 cut(s)	758
AluBI	AGCT	6 cut(s)	98, 264, 317, 455, 585, 653
AluI	AGCT	6 cut(s)	98, 264, 317, 455, 585, 653
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	1 cut(s)	221
Alw44I	GTGCAC	1 cut(s)	360
AlwI	GGATC	3 cut(s)	114, 127, 506
AoxI	GGCC	1 cut(s)	133
ApaLI	GTGCAC	1 cut(s)	360
ApeKI	GCWGC	3 cut(s)	314, 452, 481
ApoI	RAATTY	1 cut(s)	240
AseI	ATTAAT	1 cut(s)	150
AsuHPI	GGTGA	1 cut(s)	326
BaeGI	GKGCMC	2 cut(s)	364, 744
BamHI	GGATCC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	584
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	3 cut(s)	326, 464, 468
BccI	CCATC	1 cut(s)	755
BceAI	ACGGC	2 cut(s)	120, 576
BciT130I	CCWGG	2 cut(s)	340, 604
BcoDI	GTCTC	1 cut(s)	221
BcuI	ACTAGT	1 cut(s)	277
BfaI	CTAG	4 cut(s)	21, 114, 278, 737
BfmI	CTRYAG	2 cut(s)	456, 816
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	3 cut(s)	315, 453, 482
BlsI	GCNGC	3 cut(s)	316, 454, 483
Bme1390I	CCNGG	2 cut(s)	340, 604
BmgBI	CACGTC	1 cut(s)	756
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	2 cut(s)	340, 604
BmsI	GCATC	3 cut(s)	190, 238, 797
BoxI	GACNNNNGTC	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	584
BplI	GAGNNNNNCTC	2 cut(s)	816, 848
Bpu10I	CCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	581
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	338, 372
BsaWI	WCCGGW	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	708, 738
Bse1I	ACTGG	1 cut(s)	403
Bse3DI	GCAATG	2 cut(s)	333, 495
BseBI	CCWGG	2 cut(s)	340, 604
BseDI	CCNNGG	2 cut(s)	338, 372
BseGI	GGATG	1 cut(s)	788
BseMI	GCAATG	2 cut(s)	333, 495
BseMII	CTCAG	3 cut(s)	90, 92, 645
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	1 cut(s)	861
BseSI	GKGCMC	2 cut(s)	364, 744
BseX3I	CGGCCG	1 cut(s)	133
BseXI	GCAGC	3 cut(s)	326, 464, 468
BsgI	GTGCAG	2 cut(s)	471, 736
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	1 cut(s)	135
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	508
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	508
BsmI	GAATGC	1 cut(s)	712
BsnI	GGCC	1 cut(s)	135
Bso31I	GGTCTC	1 cut(s)	221
Bsp1286I	GDGCHC	2 cut(s)	364, 744
Bsp1407I	TGTACA	1 cut(s)	611
Bsp143I	GATC	6 cut(s)	119, 127, 288, 506, 511, 664
BspACI	CCGC	2 cut(s)	589, 722
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	3 cut(s)	91, 91, 646
BspLI	GGNNCC	1 cut(s)	121
BspPI	GGATC	3 cut(s)	114, 127, 506
BspTNI	GGTCTC	1 cut(s)	221
BsrDI	GCAATG	2 cut(s)	333, 495
BsrGI	TGTACA	1 cut(s)	611
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	2 cut(s)	338, 372
BssMI	GATC	6 cut(s)	119, 127, 288, 506, 511, 664
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	2 cut(s)	340, 604
Bst4CI	ACNGT	5 cut(s)	70, 388, 460, 811, 820
Bst6I	CTCTTC	1 cut(s)	546
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstAUI	TGTACA	1 cut(s)	611
BstC8I	GCNNGC	4 cut(s)	262, 782, 786, 830
BstDEI	CTNAG	3 cut(s)	78, 99, 654
BstF5I	GGATG	1 cut(s)	788
BstKTI	GATC	6 cut(s)	122, 130, 291, 509, 514, 667
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	6 cut(s)	119, 127, 288, 506, 511, 664
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	7 cut(s)	141, 257, 323, 368, 487, 686, 728
BstNI	CCWGG	2 cut(s)	340, 604
BstNSI	RCATGY	1 cut(s)	784
BstPAI	GACNNNNGTC	1 cut(s)	231
BstSCI	CCNGG	2 cut(s)	338, 602
BstSFI	CTRYAG	2 cut(s)	456, 816
BstSLI	GKGCMC	2 cut(s)	364, 744
BstV1I	GCAGC	3 cut(s)	326, 464, 468
BstV2I	GAAGAC	1 cut(s)	584
BstX2I	RGATCY	3 cut(s)	119, 127, 511
BstYI	RGATCY	3 cut(s)	119, 127, 511
BstZI	CGGCCG	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	135
BtrI	CACGTC	1 cut(s)	756
BtsCI	GGATG	1 cut(s)	788
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	4 cut(s)	289, 366, 396, 807
Cac8I	GCNNGC	4 cut(s)	262, 782, 786, 830
CseI	GACGC	2 cut(s)	192, 320
Csp6I	GTAC	2 cut(s)	389, 612
CspCI	CAANNNNNGTGG	2 cut(s)	385, 420
CviAII	CATG	1 cut(s)	781
CviQI	GTAC	2 cut(s)	389, 612
DdeI	CTNAG	3 cut(s)	78, 99, 654
DpnI	GATC	6 cut(s)	121, 129, 290, 508, 513, 666
DpnII	GATC	6 cut(s)	119, 127, 288, 506, 511, 664
EaeI	YGGCCR	1 cut(s)	133
EagI	CGGCCG	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
EciI	GGCGGA	1 cut(s)	578
EclXI	CGGCCG	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	372
Eco31I	GGTCTC	1 cut(s)	221
Eco32I	GATATC	1 cut(s)	429
Eco52I	CGGCCG	1 cut(s)	133
EcoRII	CCWGG	2 cut(s)	338, 602
EcoRV	GATATC	1 cut(s)	429
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	1 cut(s)	784
FaiI	YATR	9 cut(s)	36, 257, 308, 323, 380, 441, 782, 841, 877
FalI	AAGNNNNNCTT	4 cut(s)	543, 575, 569, 601
FaqI	GGGAC	1 cut(s)	508
FatI	CATG	1 cut(s)	780
Fnu4HI	GCNGC	3 cut(s)	315, 453, 482
FokI	GGATG	1 cut(s)	775
Fsp4HI	GCNGC	3 cut(s)	315, 453, 482
FspBI	CTAG	4 cut(s)	21, 114, 278, 737
GluI	GCNGC	3 cut(s)	315, 453, 482
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	1 cut(s)	231
HgaI	GACGC	2 cut(s)	192, 320
Hin1II	CATG	1 cut(s)	784
HindIII	AAGCTT	2 cut(s)	262, 583
HinfI	GANTC	5 cut(s)	83, 110, 227, 563, 629
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	3 cut(s)	226, 362, 614
Hpy188I	TCNGA	3 cut(s)	293, 511, 716
Hpy188III	TCNNGA	3 cut(s)	80, 164, 567
Hpy8I	GTNNAC	3 cut(s)	226, 362, 614
Hpy99I	CGWCG	1 cut(s)	141
HpyCH4III	ACNGT	5 cut(s)	70, 388, 460, 811, 820
HpyCH4IV	ACGT	2 cut(s)	644, 755
HpyCH4V	TGCA	5 cut(s)	203, 362, 452, 710, 753
HpyF10VI	GCNNNNNNNGC	7 cut(s)	141, 257, 323, 368, 487, 686, 728
HpyF3I	CTNAG	3 cut(s)	78, 99, 654
HpySE526I	ACGT	2 cut(s)	644, 755
Hsp92II	CATG	1 cut(s)	784
Kzo9I	GATC	6 cut(s)	119, 127, 288, 506, 511, 664
LmnI	GCTCC	1 cut(s)	777
Lsp1109I	GCAGC	3 cut(s)	326, 464, 468
LweI	GCATC	3 cut(s)	190, 238, 797
MaeI	CTAG	4 cut(s)	21, 114, 278, 737
MaeII	ACGT	2 cut(s)	644, 755
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	6 cut(s)	121, 129, 290, 508, 513, 666
MboI	GATC	6 cut(s)	119, 127, 288, 506, 511, 664
MboII	GAAGA	4 cut(s)	541, 554, 563, 589
MfeI	CAATTG	2 cut(s)	345, 684
MflI	RGATCY	3 cut(s)	119, 127, 511
MhlI	GDGCHC	2 cut(s)	364, 744
MluCI	AATT	5 cut(s)	15, 151, 240, 345, 684
MlyI	GAGTC	4 cut(s)	92, 221, 572, 638
MmeI	TCCRAC	1 cut(s)	802
MnlI	CCTC	6 cut(s)	56, 96, 187, 767, 818, 879
MseI	TTAA	2 cut(s)	150, 171
MslI	CAYNNNNRTG	2 cut(s)	705, 758
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	2 cut(s)	340, 604
MunI	CAATTG	2 cut(s)	345, 684
Mva1269I	GAATGC	1 cut(s)	712
MvaI	CCWGG	2 cut(s)	340, 604
MwoI	GCNNNNNNNGC	7 cut(s)	141, 257, 323, 368, 487, 686, 728
NdeII	GATC	6 cut(s)	119, 127, 288, 506, 511, 664
NlaIII	CATG	1 cut(s)	784
NlaIV	GGNNCC	1 cut(s)	121
NmeAIII	GCCGAG	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	332
NspI	RCATGY	1 cut(s)	784
OliI	CACNNNNGTG	1 cut(s)	758
PaeI	GCATGC	1 cut(s)	784
PctI	GAATGC	1 cut(s)	712
PfeI	GAWTC	1 cut(s)	110
PkrI	GCNGC	3 cut(s)	316, 454, 483
PleI	GAGTC	4 cut(s)	91, 221, 571, 637
PpsI	GAGTC	4 cut(s)	91, 221, 571, 637
PshAI	GACNNNNGTC	1 cut(s)	231
PshBI	ATTAAT	1 cut(s)	150
PsiI	TTATAA	2 cut(s)	308, 380
Psp1406I	AACGTT	1 cut(s)	644
Psp6I	CCWGG	2 cut(s)	338, 602
PspGI	CCWGG	2 cut(s)	338, 602
PspN4I	GGNNCC	1 cut(s)	121
PsuI	RGATCY	3 cut(s)	119, 127, 511
RsaI	GTAC	2 cut(s)	390, 613
RsaNI	GTAC	2 cut(s)	389, 612
RseI	CAYNNNNRTG	2 cut(s)	705, 758
SaqAI	TTAA	2 cut(s)	150, 171
SatI	GCNGC	3 cut(s)	315, 453, 482
Sau3AI	GATC	6 cut(s)	119, 127, 288, 506, 511, 664
SchI	GAGTC	4 cut(s)	92, 221, 572, 638
ScrFI	CCNGG	2 cut(s)	340, 604
SduI	GDGCHC	2 cut(s)	364, 744
SfaNI	GCATC	3 cut(s)	190, 238, 797
SfcI	CTRYAG	2 cut(s)	456, 816
SmiMI	CAYNNNNRTG	2 cut(s)	705, 758
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
SpeI	ACTAGT	1 cut(s)	277
SphI	GCATGC	1 cut(s)	784
Sse9I	AATT	5 cut(s)	15, 151, 240, 345, 684
SsiI	CCGC	2 cut(s)	589, 722
SspMI	CTAG	4 cut(s)	21, 114, 278, 737
StyD4I	CCNGG	2 cut(s)	338, 602
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	5 cut(s)	70, 388, 460, 811, 820
TaiI	ACGT	2 cut(s)	647, 758
TaqI	TCGA	1 cut(s)	246
TaqII	GACCGA	1 cut(s)	203
TasI	AATT	5 cut(s)	15, 151, 240, 345, 684
TatI	WGTACW	1 cut(s)	611
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	2 cut(s)	150, 171
Tru9I	TTAA	2 cut(s)	150, 171
TscAI	CASTG	4 cut(s)	289, 373, 403, 814
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	3 cut(s)	314, 452, 481
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	2 cut(s)	312, 625
TspGWI	ACGGA	1 cut(s)	838
TspRI	CASTG	4 cut(s)	289, 373, 403, 814
VneI	GTGCAC	1 cut(s)	360
VspI	ATTAAT	1 cut(s)	150
XapI	RAATTY	1 cut(s)	240
XceI	RCATGY	1 cut(s)	784
XspI	CTAG	4 cut(s)	21, 114, 278, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.