Rmu_sc0039980.1_g000001

GDT1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039980.1
OG0009329
Physical Location & Seq
Reverse (-)
352 .. 1794
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039980.1_g000001.1.cds

Sequence Viewer

Length: 399 bp
ctgcggttgctttacattgcttggagatctgatccaaaaggttcacagaagaaagaaatagaagaagtagaagagaaacttgagtctggacaggggaagacaactttccgccgtttcttttctagattttgtacaccaatctttttggagtcatttgttctaacatttttagctgagtggggagatcgtagccaaatagcgacaatcgctctggcaacccacaaaaatgcagtaggagttgctgtaggtgcaacattaggacataccatctgcacgtctgtggctgtggtgggagggagcatgttggcatccaaaatctcccaaaggacagtcgctaccgtcggaggcttgctcttcctgtgcttttctttgtcctcctatttttatcctcctctataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0016

Protein Analysis

132

Amino Acids

14.47

Weight (kDa)

9.15

Isoelectric Point (pI)

48.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 4, 109
AclWI GGATC 1 cut(s) 26
AfaI GTAC 1 cut(s) 133
AjiI CACGTC 1 cut(s) 276
AleI CACNNNNGTG 1 cut(s) 278
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
AlwI GGATC 1 cut(s) 26
BbsI GAAGAC 1 cut(s) 104
BccI CCATC 1 cut(s) 275
BceAI ACGGC 1 cut(s) 96
BfaI CTAG 1 cut(s) 123
BfmI CTRYAG 1 cut(s) 243
BglII AGATCT 1 cut(s) 26
BmgBI CACGTC 1 cut(s) 276
BmsI GCATC 1 cut(s) 317
BpiI GAAGAC 1 cut(s) 104
BplI GAGNNNNNCTC 2 cut(s) 336, 368
BpuEI CTTGAG 1 cut(s) 101
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bse3DI GCAATG 1 cut(s) 15
BseGI GGATG 1 cut(s) 308
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 165
BseRI GAGGAG 1 cut(s) 381
BsgI GTGCAG 1 cut(s) 256
Bsp1407I TGTACA 1 cut(s) 131
Bsp143I GATC 3 cut(s) 26, 31, 184
BspACI CCGC 2 cut(s) 4, 109
BspCNI CTCAG 1 cut(s) 166
BspPI GGATC 1 cut(s) 26
BspQI GCTCTTC 1 cut(s) 359
BsrDI GCAATG 1 cut(s) 15
BsrGI TGTACA 1 cut(s) 131
BssMI GATC 3 cut(s) 26, 31, 184
Bst4CI ACNGT 2 cut(s) 331, 340
Bst6I CTCTTC 2 cut(s) 66, 359
BstAUI TGTACA 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 350
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 308
BstKTI GATC 3 cut(s) 29, 34, 187
BstMBI GATC 3 cut(s) 26, 31, 184
BstMWI GCNNNNNNNGC 2 cut(s) 206, 248
BstNSI RCATGY 1 cut(s) 304
BstSFI CTRYAG 1 cut(s) 243
BstV2I GAAGAC 1 cut(s) 104
BstX2I RGATCY 1 cut(s) 26
BstYI RGATCY 1 cut(s) 26
BtrI CACGTC 1 cut(s) 276
BtsCI GGATG 1 cut(s) 308
Cac8I GCNNGC 1 cut(s) 350
Csp6I GTAC 1 cut(s) 132
CviAII CATG 1 cut(s) 301
CviJI RGCY 4 cut(s) 173, 192, 284, 348
CviKI_1 RGCY 4 cut(s) 173, 192, 284, 348
CviQI GTAC 1 cut(s) 132
DdeI CTNAG 1 cut(s) 174
DpnI GATC 3 cut(s) 28, 33, 186
DpnII GATC 3 cut(s) 26, 31, 184
Eam1104I CTCTTC 2 cut(s) 66, 359
EarI CTCTTC 2 cut(s) 66, 359
EciI GGCGGA 1 cut(s) 98
FaeI CATG 1 cut(s) 304
FaiI YATR 3 cut(s) 264, 302, 397
FalI AAGNNNNNCTT 2 cut(s) 63, 95
FatI CATG 1 cut(s) 300
FokI GGATG 1 cut(s) 295
FspBI CTAG 1 cut(s) 123
Hin1II CATG 1 cut(s) 304
HinfI GANTC 2 cut(s) 83, 149
Hpy166II GTNNAC 2 cut(s) 44, 134
Hpy188I TCNGA 2 cut(s) 31, 344
Hpy188III TCNNGA 2 cut(s) 87, 123
Hpy8I GTNNAC 2 cut(s) 44, 134
Hpy99I CGWCG 1 cut(s) 344
HpyCH4III ACNGT 2 cut(s) 331, 340
HpyCH4IV ACGT 1 cut(s) 275
HpyCH4V TGCA 3 cut(s) 230, 251, 273
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 248
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 1 cut(s) 275
Hsp92II CATG 1 cut(s) 304
Kzo9I GATC 3 cut(s) 26, 31, 184
LguI GCTCTTC 1 cut(s) 359
LmnI GCTCC 1 cut(s) 297
LpnPI CCDG 4 cut(s) 72, 77, 197, 371
LweI GCATC 1 cut(s) 317
MaeI CTAG 1 cut(s) 123
MaeII ACGT 1 cut(s) 275
MalI GATC 3 cut(s) 28, 33, 186
MboI GATC 3 cut(s) 26, 31, 184
MboII GAAGA 5 cut(s) 61, 74, 83, 109, 346
MflI RGATCY 1 cut(s) 26
MlyI GAGTC 2 cut(s) 92, 158
MmeI TCCRAC 1 cut(s) 322
MnlI CCTC 4 cut(s) 287, 338, 385, 399
MslI CAYNNNNRTG 2 cut(s) 225, 278
MwoI GCNNNNNNNGC 2 cut(s) 206, 248
NdeII GATC 3 cut(s) 26, 31, 184
NlaIII CATG 1 cut(s) 304
NspI RCATGY 1 cut(s) 304
OliI CACNNNNGTG 1 cut(s) 278
PciSI GCTCTTC 1 cut(s) 359
PleI GAGTC 2 cut(s) 91, 157
PpsI GAGTC 2 cut(s) 91, 157
PsuI RGATCY 1 cut(s) 26
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
RseI CAYNNNNRTG 2 cut(s) 225, 278
SapI GCTCTTC 1 cut(s) 359
Sau3AI GATC 3 cut(s) 26, 31, 184
SchI GAGTC 2 cut(s) 92, 158
SetI ASST 4 cut(s) 43, 175, 250, 278
SfaNI GCATC 1 cut(s) 317
SfcI CTRYAG 1 cut(s) 243
SmiMI CAYNNNNRTG 2 cut(s) 225, 278
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
SsiI CCGC 2 cut(s) 4, 109
SspMI CTAG 1 cut(s) 123
TaaI ACNGT 2 cut(s) 331, 340
TaiI ACGT 1 cut(s) 278
TatI WGTACW 1 cut(s) 131
XbaI TCTAGA 1 cut(s) 122
XceI RCATGY 1 cut(s) 304
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.