Rroxscaffold_6G00426140

GDT1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0009329
Physical Location & Seq
Reverse (-)
46967216 .. 46972311
5096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00426140.1

Sequence Viewer

Length: 981 bp
ATGCATGCAGTGCAGTGGGACTTGATGGCTTTTTGGATGCCTGGCACTCTGGCATTTCATTCAGCTGGTCAAAAGATTGGAAAATGTGGAGAGAGTAAAAAGCGGGAGTGGAAGGATGAGAAGTTGGCGTTTGAAGCCGGGGCCGGAGTGGCGGAAGTGTTGCTACTCCTCTCCTCCACCGTTTCTGCTCAGGAGTCTGAGGTGCAAAACGAGAGGCGAGAGTCCGGCAGATCCTTAGATCTGGGCCGGCGTAGCAAGATTAATTTGAATCTTCTCGAAGCTCTTGGAGAGAATGGCTCCGATGCAGTTGTTATTGGTCTCAATGTGGACTCCGGTCTTGGAATTTTCGATGCCTTTGTTGCAAGCTTTTCAATGATACTCGTTAGTGAGATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGCGCCACCCCAAGTCAATTGTCCTATCTGGTGCACTCTCTGCCCTGGTCGTAATGACGATACTTTCCACTGGACTTGGTAGGATTGTGCCAAATTTGATATCAAGGAAGCATACAAATAGTGCAGCTACAGTTCTTTATCTATTTTTCGGGCTGCGGTTGCTTTACATTGCTTGGAGATCTGATCCAAAAGGTTCACAGAAGAAAGAAATAGAAGAAGTAGAAGAGAAACTTGAGTCTGGACAGGGGAAGACAACTTTCCGTCGTTTCTTTTCTAGATTTTGTACACCAATCTTTTTGGAGTCCTTCGTTCTAACATTTTTAGCTGAGTGGGGAGATCGTAGCCAAATAGCGACAATCGCTCTGGCAACCCACAAAAATGCAGTAGGAGTTGCTGTAGGTGCAACATTAGGACATACCATCTGCACGTCTGTGGCTGTGGTGGGAGGGAGCATGTTGGCATCCAAAATCTCCCAAAGGACAGTCGCTACTGTCGGAGGCTTGCTCTTCCTGTGCTTCTCTTTGTCCTCCTATTTTTATCCTCCTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0016

Protein Analysis

326

Amino Acids

35.3

Weight (kDa)

8.31

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDT1 PF01169 121 - 194 1.2e-18 Divalent cation/proton antiporter GDT1
GDT1 PF01169 244 - 316 8.7e-25 Divalent cation/proton antiporter GDT1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 410
AciI CCGC 3 cut(s) 103, 152, 586
AclWI GGATC 2 cut(s) 225, 608
AcsI RAATTY 2 cut(s) 342, 523
AfaI GTAC 1 cut(s) 715
AgsI TTSAA 3 cut(s) 134, 268, 372
AjiI CACGTC 1 cut(s) 858
AjnI CCWGG 2 cut(s) 40, 474
AleI CACNNNNGTG 1 cut(s) 860
AluBI AGCT 6 cut(s) 65, 281, 366, 419, 557, 755
AluI AGCT 6 cut(s) 65, 281, 366, 419, 557, 755
Alw21I GWGCWC 1 cut(s) 466
Alw26I GTCTC 1 cut(s) 323
Alw44I GTGCAC 1 cut(s) 462
AlwI GGATC 2 cut(s) 225, 608
AoxI GGCC 2 cut(s) 141, 244
ApaLI GTGCAC 1 cut(s) 462
ApeKI GCWGC 3 cut(s) 416, 554, 583
ApoI RAATTY 2 cut(s) 342, 523
AseI ATTAAT 1 cut(s) 261
AspLEI GCGC 1 cut(s) 435
AspS9I GGNCC 2 cut(s) 141, 244
AsuC2I CCSGG 1 cut(s) 139
BaeGI GKGCMC 1 cut(s) 466
BarI GAAGNNNNNNTAC 2 cut(s) 147, 179
BbsI GAAGAC 1 cut(s) 686
Bbv12I GWGCWC 1 cut(s) 466
BbvI GCAGC 3 cut(s) 428, 566, 570
BccI CCATC 2 cut(s) 19, 857
BciT130I CCWGG 2 cut(s) 42, 476
BcnI CCSGG 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 323
BfaI CTAG 1 cut(s) 705
BfmI CTRYAG 2 cut(s) 558, 825
BglI GCCNNNNNGGC 1 cut(s) 149
BglII AGATCT 2 cut(s) 238, 608
BisI GCNGC 3 cut(s) 417, 555, 584
BlsI GCNGC 3 cut(s) 418, 556, 585
Bme1390I CCNGG 3 cut(s) 42, 139, 476
BmgBI CACGTC 1 cut(s) 858
BmgT120I GGNCC 2 cut(s) 141, 244
BmiI GGNNCC 2 cut(s) 142, 298
BmrFI CCNGG 3 cut(s) 42, 139, 476
BmsI GCATC 4 cut(s) 27, 292, 340, 899
BoxI GACNNNNGTC 1 cut(s) 333
BpiI GAAGAC 1 cut(s) 686
BplI GAGNNNNNCTC 4 cut(s) 281, 313, 918, 950
Bpu10I CCTNAGC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 683
BpuMI CCSGG 1 cut(s) 139
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 2 cut(s) 138, 474
BsaWI WCCGGW 1 cut(s) 332
BsaXI ACNNNNNCTCC 2 cut(s) 810, 840
Bse118I RCCGGY 1 cut(s) 246
Bse1I ACTGG 1 cut(s) 505
Bse3DI GCAATG 2 cut(s) 435, 597
BseBI CCWGG 2 cut(s) 42, 476
BseDI CCNNGG 2 cut(s) 138, 474
BseGI GGATG 3 cut(s) 42, 121, 890
BseMI GCAATG 2 cut(s) 435, 597
BseMII CTCAG 3 cut(s) 189, 203, 747
BseNI ACTGG 1 cut(s) 505
BseRI GAGGAG 3 cut(s) 158, 163, 963
BseSI GKGCMC 1 cut(s) 466
BseXI GCAGC 3 cut(s) 428, 566, 570
BsgI GTGCAG 3 cut(s) 32, 573, 838
BshFI GGCC 2 cut(s) 143, 246
BsiHKAI GWGCWC 1 cut(s) 466
BsiSI CCGG 5 cut(s) 138, 144, 225, 247, 333
BslFI GGGAC 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 323
BsmFI GGGAC 1 cut(s) 32
BsnI GGCC 2 cut(s) 143, 246
Bso31I GGTCTC 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 466
Bsp1407I TGTACA 1 cut(s) 713
Bsp143I GATC 5 cut(s) 230, 238, 608, 613, 766
BspACI CCGC 3 cut(s) 103, 152, 586
BspANI GGCC 2 cut(s) 143, 246
BspCNI CTCAG 3 cut(s) 190, 202, 748
BspLI GGNNCC 2 cut(s) 142, 298
BspPI GGATC 2 cut(s) 225, 608
BspQI GCTCTTC 1 cut(s) 941
BspTNI GGTCTC 1 cut(s) 323
BsrDI GCAATG 2 cut(s) 435, 597
BsrFI RCCGGY 1 cut(s) 246
BsrGI TGTACA 1 cut(s) 713
BsrI ACTGG 1 cut(s) 505
BssAI RCCGGY 1 cut(s) 246
BssECI CCNNGG 2 cut(s) 138, 474
BssMI GATC 5 cut(s) 230, 238, 608, 613, 766
Bst2UI CCWGG 2 cut(s) 42, 476
Bst4CI ACNGT 4 cut(s) 181, 562, 913, 922
Bst6I CTCTTC 2 cut(s) 648, 941
BstAPI GCANNNNNTGC 2 cut(s) 10, 470
BstAUI TGTACA 1 cut(s) 713
BstC8I GCNNGC 4 cut(s) 6, 248, 364, 932
BstDEI CTNAG 4 cut(s) 189, 198, 235, 756
BstF5I GGATG 3 cut(s) 42, 121, 890
BstHHI GCGC 1 cut(s) 435
BstKTI GATC 5 cut(s) 233, 241, 611, 616, 769
BstMAI GTCTC 1 cut(s) 323
BstMBI GATC 5 cut(s) 230, 238, 608, 613, 766
BstNI CCWGG 2 cut(s) 42, 476
BstNSI RCATGY 2 cut(s) 8, 886
BstPAI GACNNNNGTC 1 cut(s) 333
BstSCI CCNGG 3 cut(s) 40, 137, 474
BstSFI CTRYAG 2 cut(s) 558, 825
BstSLI GKGCMC 1 cut(s) 466
BstV1I GCAGC 3 cut(s) 428, 566, 570
BstV2I GAAGAC 1 cut(s) 686
BstX2I RGATCY 3 cut(s) 230, 238, 608
BstYI RGATCY 3 cut(s) 230, 238, 608
BsuRI GGCC 2 cut(s) 143, 246
BtrI CACGTC 1 cut(s) 858
BtsCI GGATG 3 cut(s) 42, 121, 890
BtsI GCAGTG 2 cut(s) 15, 20
BtsIMutI CAGTG 3 cut(s) 15, 20, 498
Cac8I GCNNGC 4 cut(s) 6, 248, 364, 932
CfoI GCGC 1 cut(s) 435
Cfr10I RCCGGY 1 cut(s) 246
Cfr13I GGNCC 2 cut(s) 141, 244
Csp6I GTAC 1 cut(s) 714
CspCI CAANNNNNGTGG 2 cut(s) 487, 522
CviAII CATG 2 cut(s) 5, 883
CviQI GTAC 1 cut(s) 714
DdeI CTNAG 4 cut(s) 189, 198, 235, 756
DpnI GATC 5 cut(s) 232, 240, 610, 615, 768
DpnII GATC 5 cut(s) 230, 238, 608, 613, 766
Eam1104I CTCTTC 2 cut(s) 648, 941
EarI CTCTTC 2 cut(s) 648, 941
EciI GGCGGA 1 cut(s) 167
Eco31I GGTCTC 1 cut(s) 323
Eco32I GATATC 1 cut(s) 531
EcoRII CCWGG 2 cut(s) 40, 474
EcoRV GATATC 1 cut(s) 531
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 8, 886
FaiI YATR 7 cut(s) 6, 410, 425, 543, 846, 884, 979
FalI AAGNNNNNCTT 2 cut(s) 645, 677
FaqI GGGAC 1 cut(s) 32
FatI CATG 2 cut(s) 4, 882
FauI CCCGC 1 cut(s) 96
Fnu4HI GCNGC 3 cut(s) 417, 555, 584
FokI GGATG 3 cut(s) 49, 128, 877
Fsp4HI GCNGC 3 cut(s) 417, 555, 584
FspBI CTAG 1 cut(s) 705
GlaI GCGC 1 cut(s) 434
GluI GCNGC 3 cut(s) 417, 555, 584
HaeIII GGCC 2 cut(s) 143, 246
HapII CCGG 5 cut(s) 138, 144, 225, 247, 333
HhaI GCGC 1 cut(s) 435
Hin1II CATG 2 cut(s) 8, 886
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HindIII AAGCTT 1 cut(s) 364
HinfI GANTC 6 cut(s) 194, 221, 268, 329, 665, 731
HpaII CCGG 5 cut(s) 138, 144, 225, 247, 333
Hpy166II GTNNAC 4 cut(s) 328, 464, 626, 716
Hpy188I TCNGA 4 cut(s) 199, 301, 613, 926
Hpy188III TCNNGA 4 cut(s) 191, 275, 669, 705
Hpy8I GTNNAC 4 cut(s) 328, 464, 626, 716
Hpy99I CGWCG 1 cut(s) 696
HpyAV CCTTC 2 cut(s) 106, 745
HpyCH4III ACNGT 4 cut(s) 181, 562, 913, 922
HpyCH4IV ACGT 1 cut(s) 857
HpyF3I CTNAG 4 cut(s) 189, 198, 235, 756
HpySE526I ACGT 1 cut(s) 857
Hsp92II CATG 2 cut(s) 8, 886
HspAI GCGC 1 cut(s) 433
KroI GCCGGC 1 cut(s) 246
KroNI GCCGGC 1 cut(s) 248
Kzo9I GATC 5 cut(s) 230, 238, 608, 613, 766
LguI GCTCTTC 1 cut(s) 941
LmnI GCTCC 2 cut(s) 302, 879
Lsp1109I GCAGC 3 cut(s) 428, 566, 570
LweI GCATC 4 cut(s) 27, 292, 340, 899
MaeI CTAG 1 cut(s) 705
MaeII ACGT 1 cut(s) 857
MalI GATC 5 cut(s) 232, 240, 610, 615, 768
MboI GATC 5 cut(s) 230, 238, 608, 613, 766
MboII GAAGA 6 cut(s) 263, 643, 656, 665, 691, 928
MfeI CAATTG 1 cut(s) 447
MflI RGATCY 3 cut(s) 230, 238, 608
MhlI GDGCHC 1 cut(s) 466
MluCI AATT 4 cut(s) 262, 342, 447, 523
MlyI GAGTC 5 cut(s) 203, 230, 323, 674, 740
MmeI TCCRAC 1 cut(s) 904
MnlI CCTC 8 cut(s) 179, 184, 193, 207, 869, 920, 967, 981
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 246
MseI TTAA 1 cut(s) 261
MslI CAYNNNNRTG 2 cut(s) 807, 860
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 5 cut(s) 138, 144, 225, 247, 333
MspR9I CCNGG 3 cut(s) 42, 139, 476
MunI CAATTG 1 cut(s) 447
MvaI CCWGG 2 cut(s) 42, 476
NaeI GCCGGC 1 cut(s) 248
NciI CCSGG 1 cut(s) 139
NdeII GATC 5 cut(s) 230, 238, 608, 613, 766
NgoMIV GCCGGC 1 cut(s) 246
NlaIII CATG 2 cut(s) 8, 886
NlaIV GGNNCC 2 cut(s) 142, 298
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 8, 886
OliI CACNNNNGTG 1 cut(s) 860
PaeI GCATGC 1 cut(s) 8
PciSI GCTCTTC 1 cut(s) 941
PdiI GCCGGC 1 cut(s) 248
PfeI GAWTC 1 cut(s) 268
PkrI GCNGC 3 cut(s) 418, 556, 585
PleI GAGTC 5 cut(s) 202, 229, 323, 673, 739
PpsI GAGTC 5 cut(s) 202, 229, 323, 673, 739
PshAI GACNNNNGTC 1 cut(s) 333
PshBI ATTAAT 1 cut(s) 261
PsiI TTATAA 1 cut(s) 410
Psp6I CCWGG 2 cut(s) 40, 474
PspGI CCWGG 2 cut(s) 40, 474
PspN4I GGNNCC 2 cut(s) 142, 298
PspPI GGNCC 2 cut(s) 141, 244
PsuI RGATCY 3 cut(s) 230, 238, 608
PvuII CAGCTG 1 cut(s) 65
RsaI GTAC 1 cut(s) 715
RsaNI GTAC 1 cut(s) 714
RseI CAYNNNNRTG 2 cut(s) 807, 860
SapI GCTCTTC 1 cut(s) 941
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 3 cut(s) 417, 555, 584
Sau3AI GATC 5 cut(s) 230, 238, 608, 613, 766
Sau96I GGNCC 2 cut(s) 141, 244
SchI GAGTC 5 cut(s) 203, 230, 323, 674, 740
ScrFI CCNGG 3 cut(s) 42, 139, 476
SduI GDGCHC 1 cut(s) 466
SfaNI GCATC 4 cut(s) 27, 292, 340, 899
SfcI CTRYAG 2 cut(s) 558, 825
SmiMI CAYNNNNRTG 2 cut(s) 807, 860
SmlI CTYRAG 1 cut(s) 662
SmoI CTYRAG 1 cut(s) 662
SphI GCATGC 1 cut(s) 8
Sse9I AATT 4 cut(s) 262, 342, 447, 523
SsiI CCGC 3 cut(s) 103, 152, 586
SspMI CTAG 1 cut(s) 705
StyD4I CCNGG 3 cut(s) 40, 137, 474
TaaI ACNGT 4 cut(s) 181, 562, 913, 922
TaiI ACGT 1 cut(s) 860
TaqI TCGA 2 cut(s) 276, 348
TasI AATT 4 cut(s) 262, 342, 447, 523
TatI WGTACW 1 cut(s) 713
TfiI GAWTC 1 cut(s) 268
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 3 cut(s) 15, 20, 505
TseI GCWGC 3 cut(s) 416, 554, 583
TspDTI ATGAA 2 cut(s) 47, 414
TspGWI ACGGA 1 cut(s) 680
TspRI CASTG 3 cut(s) 15, 20, 505
VneI GTGCAC 1 cut(s) 462
VspI ATTAAT 1 cut(s) 261
XapI RAATTY 2 cut(s) 342, 523
XbaI TCTAGA 1 cut(s) 704
XceI RCATGY 2 cut(s) 8, 886
XspI CTAG 1 cut(s) 705
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.