Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0009329

Physical Location & Seq

Genomic Coordinates Forward (+)

32046540 .. 32050218

Gene Structure 3679 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1244200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGAGTTTCGCTCGATTCTCAGAACGATTGCGTACTCCCTCCCCCTCCTCTTGCTCCTCCTCCTCGCCGTTTCTGCTCAGGAGTCTGGGGCTGAAGCTGAGAGGGGAGACTCTAGGGGATCCAAAAATCTGGGCCGTCGTAGTAAGATAAAATTGGGTATTCTTGAAGTTAATACTCTTGGAGTCAAGACAGAGGGCGACTCAGTTGCTATCGGCCTCCACGTGGACTCGGGGCTTGGAGTTTTCGATGCCTTTATCGCAAGTTTGTCAATGATTTTAGTTAGTGAGATTGGAGATGAAACATTTATGATAGCAGCTCTTATGGCAATGCGTCACCCCAGGTCAATTGTCCTATCTGGTGCACTTTCCGCCTTGTTTATAATGACGGTACTTTCTACTGGACTTGGTAGGATTGTGCCAAACTTGATATCAAGGAAGCATACAAATAGTGCAGCTACAGTTCTATATTTATTTTTTGGACTGAGGTTACTTTACATTGCTTGGAGATCATCAGATTCTAAATCTTCCCAGAAGAAAGAAATTGAAGAAGTTGAAGAGAAACTTGAGTCTGGACAGGGAAAGACACCCTTCCGCCGTTTCTTTTCCAGATTTTGTACACCTATCTTCTTGGAGTCTTTCATTTTAACATTTTTAGCAGAGTGGGGAGATCGCAGCCAAATAGCGACAATTGCTCTGGCAACCCACAAAAATGCGATTGGAGTTGCGGTGGGTGCAACACTAGGACATACAGTCTGCACGTCTGTGGCTGTGGTAGGAGGGAGTATGTTGGCATCCAAAATCTCCCAACGGACAGTCGCTACAGTTGGAGGCTTGCTCTTCCTATGCTTCTCCGTGTCGTCATATTTTTATCCTCCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

294

Amino Acids

31.62

Weight (kDa)

9.32

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	87 - 160	1.2e-17	Divalent cation/proton antiporter GDT1
GDT1	PF01169	211 - 283	9.7e-25	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36290 AT5G36290
fragaria_vesca	FvH4_6g00560
malus_domestica	MD04G1244200.v1.1 MD12G1260000.v1.1
prunus_persica	Prupe.6G360700_v2.0.a1 Prupe.6G360700_v2.0.a1
pyrus_communis	pycom04g21510 pycom12g23810
rosa_chinensis	RchiOBHm_Chr3g0447951
rosa_laevigata	RLG00000025958
rosa_multiflora	Rmu_sc0005969.1_g000006 Rmu_sc0033046.1_g000001 Rmu_sc0039980.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426140
rosa_rugosa	Rorug01G0061500.1 Rorug02G0607300
rosa_samantha	Rh1BG063200 Rh3BG006200 Rh3CG006400 Rh3DG006800
rosa_wichuraiana	Rw3G000520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	380
AciI	CCGC	3 cut(s)	369, 592, 725
AclWI	GGATC	2 cut(s)	114, 127
AcuI	CTGAAG	1 cut(s)	114
AcvI	CACGTG	1 cut(s)	223
AfaI	GTAC	3 cut(s)	35, 390, 616
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	3 cut(s)	167, 545, 554
AhdI	GACNNNNNGTC	1 cut(s)	749
AjiI	CACGTC	1 cut(s)	759
AjnI	CCWGG	1 cut(s)	338
AleI	CACNNNNGTG	1 cut(s)	761
AluBI	AGCT	3 cut(s)	98, 317, 455
AluI	AGCT	3 cut(s)	98, 317, 455
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	1 cut(s)	102
Alw44I	GTGCAC	1 cut(s)	360
AlwI	GGATC	2 cut(s)	114, 127
Ama87I	CYCGRG	1 cut(s)	229
AoxI	GGCC	2 cut(s)	133, 214
ApaLI	GTGCAC	1 cut(s)	360
ApeKI	GCWGC	3 cut(s)	314, 452, 672
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	1 cut(s)	326
AvaI	CYCGRG	1 cut(s)	229
BaeGI	GKGCMC	1 cut(s)	364
BamHI	GGATCC	1 cut(s)	119
BbrPI	CACGTG	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	3 cut(s)	326, 464, 684
BceAI	ACGGC	3 cut(s)	53, 120, 579
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BciT130I	CCWGG	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	2 cut(s)	114, 740
BfmI	CTRYAG	2 cut(s)	456, 819
BisI	GCNGC	3 cut(s)	315, 453, 673
BlsI	GCNGC	3 cut(s)	316, 454, 674
Bme1390I	CCNGG	1 cut(s)	340
BmeRI	GACNNNNNGTC	1 cut(s)	749
BmeT110I	CYCGRG	1 cut(s)	229
BmgBI	CACGTC	1 cut(s)	759
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	340
BmsI	GCATC	2 cut(s)	238, 800
BplI	GAGNNNNNCTC	5 cut(s)	28, 185, 217, 819, 851
Bpu10I	CCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	584
BsaAI	YACGTR	1 cut(s)	223
BsaJI	CCNNGG	1 cut(s)	338
BsaXI	ACNNNNNCTCC	2 cut(s)	711, 741
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	403
Bse3DI	GCAATG	2 cut(s)	333, 495
BseBI	CCWGG	1 cut(s)	340
BseDI	CCNNGG	1 cut(s)	338
BseGI	GGATG	1 cut(s)	791
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	2 cut(s)	333, 495
BseMII	CTCAG	5 cut(s)	34, 90, 92, 216, 473
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	5 cut(s)	38, 47, 50, 53, 864
BseSI	GKGCMC	1 cut(s)	364
BseXI	GCAGC	3 cut(s)	326, 464, 684
BsgI	GTGCAG	2 cut(s)	471, 739
BshFI	GGCC	2 cut(s)	135, 216
BsiHKAI	GWGCWC	1 cut(s)	364
BsiHKCI	CYCGRG	1 cut(s)	229
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	102
BsnI	GGCC	2 cut(s)	135, 216
BsoBI	CYCGRG	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp1407I	TGTACA	1 cut(s)	614
Bsp143I	GATC	3 cut(s)	119, 506, 667
BspACI	CCGC	3 cut(s)	369, 592, 725
BspANI	GGCC	2 cut(s)	135, 216
BspCNI	CTCAG	5 cut(s)	33, 91, 91, 215, 474
BspLI	GGNNCC	1 cut(s)	121
BspPI	GGATC	2 cut(s)	114, 127
BspQI	GCTCTTC	1 cut(s)	842
BsrDI	GCAATG	2 cut(s)	333, 495
BsrGI	TGTACA	1 cut(s)	614
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	3 cut(s)	119, 506, 667
Bst2UI	CCWGG	1 cut(s)	340
Bst4CI	ACNGT	5 cut(s)	388, 460, 751, 814, 823
Bst6I	CTCTTC	2 cut(s)	549, 842
BstAUI	TGTACA	1 cut(s)	614
BstBAI	YACGTR	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	833
BstDEI	CTNAG	5 cut(s)	20, 78, 99, 202, 482
BstF5I	GGATG	1 cut(s)	791
BstKTI	GATC	3 cut(s)	122, 509, 670
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	3 cut(s)	119, 506, 667
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 257, 323, 368, 689, 731
BstNI	CCWGG	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	338
BstSFI	CTRYAG	2 cut(s)	456, 819
BstSLI	GKGCMC	1 cut(s)	364
BstV1I	GCAGC	3 cut(s)	326, 464, 684
BstX2I	RGATCY	1 cut(s)	119
BstXI	CCANNNNNNTGG	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	119
BsuRI	GGCC	2 cut(s)	135, 216
BtrI	CACGTC	1 cut(s)	759
BtsCI	GGATG	1 cut(s)	791
Cac8I	GCNNGC	1 cut(s)	833
Cfr13I	GGNCC	1 cut(s)	133
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	3 cut(s)	34, 389, 615
CviQI	GTAC	3 cut(s)	34, 389, 615
DdeI	CTNAG	5 cut(s)	20, 78, 99, 202, 482
DpnI	GATC	3 cut(s)	121, 508, 669
DpnII	GATC	3 cut(s)	119, 506, 667
DriI	GACNNNNNGTC	1 cut(s)	749
Eam1104I	CTCTTC	2 cut(s)	549, 842
Eam1105I	GACNNNNNGTC	1 cut(s)	749
EarI	CTCTTC	2 cut(s)	549, 842
EciI	GGCGGA	2 cut(s)	358, 581
Eco32I	GATATC	1 cut(s)	429
Eco57I	CTGAAG	1 cut(s)	114
Eco72I	CACGTG	1 cut(s)	223
Eco88I	CYCGRG	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	338
EcoRV	GATATC	1 cut(s)	429
FaiI	YATR	9 cut(s)	308, 323, 380, 441, 466, 747, 785, 844, 862
FalI	AAGNNNNNCTT	4 cut(s)	546, 578, 572, 604
Fnu4HI	GCNGC	3 cut(s)	315, 453, 673
FokI	GGATG	1 cut(s)	778
Fsp4HI	GCNGC	3 cut(s)	315, 453, 673
FspBI	CTAG	2 cut(s)	114, 740
GluI	GCNGC	3 cut(s)	315, 453, 673
HaeIII	GGCC	2 cut(s)	135, 216
HgaI	GACGC	1 cut(s)	320
HinfI	GANTC	9 cut(s)	16, 83, 110, 183, 200, 227, 515, 566, 632
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	3 cut(s)	226, 362, 617
Hpy188I	TCNGA	2 cut(s)	23, 514
Hpy188III	TCNNGA	5 cut(s)	80, 164, 187, 570, 606
Hpy8I	GTNNAC	3 cut(s)	226, 362, 617
Hpy99I	CGWCG	1 cut(s)	141
HpyAV	CCTTC	1 cut(s)	598
HpyCH4III	ACNGT	5 cut(s)	388, 460, 751, 814, 823
HpyCH4IV	ACGT	2 cut(s)	222, 758
HpyCH4V	TGCA	4 cut(s)	362, 452, 734, 756
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 257, 323, 368, 689, 731
HpyF3I	CTNAG	5 cut(s)	20, 78, 99, 202, 482
HpySE526I	ACGT	2 cut(s)	222, 758
Kzo9I	GATC	3 cut(s)	119, 506, 667
LguI	GCTCTTC	1 cut(s)	842
LmnI	GCTCC	1 cut(s)	60
Lsp1109I	GCAGC	3 cut(s)	326, 464, 684
LweI	GCATC	2 cut(s)	238, 800
MaeI	CTAG	2 cut(s)	114, 740
MaeII	ACGT	2 cut(s)	222, 758
MaeIII	GTNAC	2 cut(s)	332, 486
MalI	GATC	3 cut(s)	121, 508, 669
MboI	GATC	3 cut(s)	119, 506, 667
MboII	GAAGA	6 cut(s)	516, 544, 557, 566, 616, 829
MfeI	CAATTG	2 cut(s)	345, 687
MflI	RGATCY	1 cut(s)	119
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	4 cut(s)	152, 345, 540, 687
MlyI	GAGTC	7 cut(s)	92, 104, 192, 194, 221, 575, 641
MmeI	TCCRAC	1 cut(s)	805
MseI	TTAA	2 cut(s)	171, 644
MslI	CAYNNNNRTG	2 cut(s)	708, 761
MspR9I	CCNGG	1 cut(s)	340
MunI	CAATTG	2 cut(s)	345, 687
MvaI	CCWGG	1 cut(s)	340
MwoI	GCNNNNNNNGC	6 cut(s)	74, 257, 323, 368, 689, 731
NdeII	GATC	3 cut(s)	119, 506, 667
NlaIV	GGNNCC	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	332
OliI	CACNNNNGTG	1 cut(s)	761
PciSI	GCTCTTC	1 cut(s)	842
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	16, 515
PkrI	GCNGC	3 cut(s)	316, 454, 674
PleI	GAGTC	7 cut(s)	91, 104, 191, 194, 221, 574, 640
PmaCI	CACGTG	1 cut(s)	223
PmlI	CACGTG	1 cut(s)	223
PpsI	GAGTC	7 cut(s)	91, 104, 191, 194, 221, 574, 640
Ppu21I	YACGTR	1 cut(s)	223
PsiI	TTATAA	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	338
PspCI	CACGTG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	338
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	119
RsaI	GTAC	3 cut(s)	35, 390, 616
RsaNI	GTAC	3 cut(s)	34, 389, 615
RseI	CAYNNNNRTG	2 cut(s)	708, 761
SapI	GCTCTTC	1 cut(s)	842
SaqAI	TTAA	2 cut(s)	171, 644
SatI	GCNGC	3 cut(s)	315, 453, 673
Sau3AI	GATC	3 cut(s)	119, 506, 667
Sau96I	GGNCC	1 cut(s)	133
SchI	GAGTC	7 cut(s)	92, 104, 192, 194, 221, 575, 641
ScrFI	CCNGG	1 cut(s)	340
SduI	GDGCHC	1 cut(s)	364
SetI	ASST	8 cut(s)	100, 225, 319, 344, 457, 488, 622, 761
SfaNI	GCATC	2 cut(s)	238, 800
SfcI	CTRYAG	2 cut(s)	456, 819
SmiMI	CAYNNNNRTG	2 cut(s)	708, 761
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	4 cut(s)	152, 345, 540, 687
SsiI	CCGC	3 cut(s)	369, 592, 725
SspMI	CTAG	2 cut(s)	114, 740
StyD4I	CCNGG	1 cut(s)	338
TaaI	ACNGT	5 cut(s)	388, 460, 751, 814, 823
TaiI	ACGT	2 cut(s)	225, 761
TaqI	TCGA	2 cut(s)	14, 246
TasI	AATT	4 cut(s)	152, 345, 540, 687
TatI	WGTACW	1 cut(s)	614
TfiI	GAWTC	2 cut(s)	16, 515
Tru1I	TTAA	2 cut(s)	171, 644
Tru9I	TTAA	2 cut(s)	171, 644
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	3 cut(s)	314, 452, 672
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	2 cut(s)	312, 628
TspGWI	ACGGA	2 cut(s)	823, 841
VneI	GTGCAC	1 cut(s)	360
XspI	CTAG	2 cut(s)	114, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.