Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009329

Physical Location & Seq

Genomic Coordinates Forward (+)

14302662 .. 14305182

Gene Structure 2521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G36290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGGTTTGATTTCAAACCCTACCCGTTTGATTCTCGTCGCCACCATCTTCTTCCTCGTTTCTTCAATCTCCGGTCAGGATTCTGTCGTTGAGAACAATGAGAGACAAGAATCTGAAGGATCTGGTAAAGAGCTTGGTCGTCGTGGAATGGTTGGTACTGAACGAATTGGAGTTGATACTGTTGTAGACAATATTGGTGCTCTTGGTTTGAATCTAGACCTTGATGCTACTGCTCCTAGTGTATTTGATGCTTTGTTTTCGAGTTTCTCGATGATACTTGTCACCGAGATTGGGGATGAAACTTTTATAATAGCGGCATTGATGGCTATGCGACATCCTAAAGCTACTGTTTTATCTGGTGCACTCTCAGCTTTGTTTGTTATGACTATACTTTCTACTGGACTTGGTAGGATAGTGCCAAACTTGATATCGAGGAAGCACACCAATAGTGCTGCTACAGTGCTCTATGCATTTTTTGGTTTGCGACTACTCTACATTGCTTGGAGGTCTACTGATTCAAAGTCAAATCAGAAGAAAGAAATGGAGGAAGTTGAAGAGAAGCTCGAGTCAGGTCAAGGGAAGACACCCTTCCGTCGTTTATTCTCAAGATTTTGTACCCCAATATTTCTGGAGTCCTTCATCTTAACCTTTCTAGCTGAATGGGGTGACCGTAGCCAGATCGCTACAATAGCTTTGGCGACTCACAAGAACGCCATAGGAGTGGCCATTGGGGCAAGTATTGGACACACTGTGTGTACTTCACTAGCAGTTGTTGGAGGAAGCATGCTGGCTTCAAGGATCTCGCAACGTACGGTCGCAACTGTTGGAGGCTTACTCTTCCTCGGCTTTTCAGTCTCCTCCTATTTCTATCCTCCATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

293

Amino Acids

31.53

Weight (kDa)

6.92

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	87 - 160	8.3e-18	Divalent cation/proton antiporter GDT1
GDT1	PF01169	211 - 283	8e-25	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36290 AT5G36290
fragaria_vesca	FvH4_6g00560
malus_domestica	MD04G1244200.v1.1 MD12G1260000.v1.1
prunus_persica	Prupe.6G360700_v2.0.a1 Prupe.6G360700_v2.0.a1
pyrus_communis	pycom04g21510 pycom12g23810
rosa_chinensis	RchiOBHm_Chr3g0447951
rosa_laevigata	RLG00000025958
rosa_multiflora	Rmu_sc0005969.1_g000006 Rmu_sc0033046.1_g000001 Rmu_sc0039980.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426140
rosa_rugosa	Rorug01G0061500.1 Rorug02G0607300
rosa_samantha	Rh1BG063200 Rh3BG006200 Rh3CG006400 Rh3DG006800
rosa_wichuraiana	Rw3G000520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	308
AccI	GTMKAC	2 cut(s)	186, 509
AciI	CCGC	1 cut(s)	314
AclWI	GGATC	2 cut(s)	127, 806
AcoI	YGGCCR	1 cut(s)	723
AcuI	CTGAAG	1 cut(s)	135
AdeI	CACNNNGTG	2 cut(s)	751, 753
AfaI	GTAC	4 cut(s)	157, 616, 757, 811
AfiI	CCNNNNNNNGG	1 cut(s)	291
AgsI	TTSAA	6 cut(s)	15, 66, 211, 519, 554, 795
AluBI	AGCT	6 cut(s)	133, 344, 371, 562, 656, 692
AluI	AGCT	6 cut(s)	133, 344, 371, 562, 656, 692
Alw21I	GWGCWC	3 cut(s)	202, 364, 465
Alw26I	GTCTC	2 cut(s)	97, 859
Alw44I	GTGCAC	1 cut(s)	360
AlwI	GGATC	2 cut(s)	127, 806
Ama87I	CYCGRG	1 cut(s)	563
AoxI	GGCC	1 cut(s)	723
ApaLI	GTGCAC	1 cut(s)	360
ApeKI	GCWGC	1 cut(s)	452
AsuHPI	GGTGA	2 cut(s)	274, 677
AvaI	CYCGRG	1 cut(s)	563
BaeGI	GKGCMC	1 cut(s)	364
BaeI	ACNNNNGTAYC	2 cut(s)	168, 201
BalI	TGGCCA	1 cut(s)	725
BbsI	GAAGAC	1 cut(s)	587
Bbv12I	GWGCWC	3 cut(s)	202, 364, 465
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	2 cut(s)	53, 316
BcoDI	GTCTC	2 cut(s)	97, 859
BfaI	CTAG	4 cut(s)	215, 237, 653, 764
BfmI	CTRYAG	1 cut(s)	456
BglI	GCCNNNNNGGC	1 cut(s)	731
BisI	GCNGC	2 cut(s)	315, 453
BlsI	GCNGC	2 cut(s)	316, 454
BmeT110I	CYCGRG	1 cut(s)	563
BmsI	GCATC	2 cut(s)	214, 238
BpiI	GAAGAC	1 cut(s)	587
BplI	GAGNNNNNCTC	2 cut(s)	819, 851
BpmI	CTGGAG	1 cut(s)	650
BpuEI	CTTGAG	1 cut(s)	589
BsaJI	CCNNGG	1 cut(s)	841
BsaWI	WCCGGW	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
Bse1I	ACTGG	1 cut(s)	403
Bse3DI	GCAATG	1 cut(s)	495
BseDI	CCNNGG	1 cut(s)	841
BseGI	GGATG	2 cut(s)	301, 334
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	1 cut(s)	847
BseSI	GKGCMC	1 cut(s)	364
BseXI	GCAGC	1 cut(s)	439
Bsh1285I	CGRYCG	1 cut(s)	816
BshFI	GGCC	1 cut(s)	725
BsiEI	CGRYCG	1 cut(s)	816
BsiHKAI	GWGCWC	3 cut(s)	202, 364, 465
BsiHKCI	CYCGRG	1 cut(s)	563
BsiSI	CCGG	1 cut(s)	72
BsiWI	CGTACG	1 cut(s)	809
BslI	CCNNNNNNNGG	1 cut(s)	291
BsmAI	GTCTC	2 cut(s)	97, 859
BsnI	GGCC	1 cut(s)	725
BsoBI	CYCGRG	1 cut(s)	563
Bsp1286I	GDGCHC	3 cut(s)	202, 364, 465
Bsp143I	GATC	3 cut(s)	119, 678, 798
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	725
BspCNI	CTCAG	1 cut(s)	380
BspPI	GGATC	2 cut(s)	127, 806
BsrDI	GCAATG	1 cut(s)	495
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	1 cut(s)	841
BssMI	GATC	3 cut(s)	119, 678, 798
Bst4CI	ACNGT	7 cut(s)	181, 349, 460, 671, 751, 814, 823
Bst6I	CTCTTC	2 cut(s)	549, 842
BstC8I	GCNNGC	2 cut(s)	785, 789
BstDEI	CTNAG	1 cut(s)	367
BstEII	GGTNACC	1 cut(s)	665
BstF5I	GGATG	2 cut(s)	301, 334
BstKTI	GATC	3 cut(s)	122, 681, 801
BstMAI	GTCTC	2 cut(s)	97, 859
BstMBI	GATC	3 cut(s)	119, 678, 798
BstMCI	CGRYCG	1 cut(s)	816
BstMWI	GCNNNNNNNGC	4 cut(s)	323, 368, 689, 731
BstNSI	RCATGY	1 cut(s)	787
BstPI	GGTNACC	1 cut(s)	665
BstSFI	CTRYAG	1 cut(s)	456
BstSLI	GKGCMC	1 cut(s)	364
BstV1I	GCAGC	1 cut(s)	439
BstV2I	GAAGAC	1 cut(s)	587
BstX2I	RGATCY	2 cut(s)	119, 798
BstXI	CCANNNNNNTGG	1 cut(s)	721
BstYI	RGATCY	2 cut(s)	119, 798
BsuRI	GGCC	1 cut(s)	725
BtsCI	GGATG	2 cut(s)	301, 334
BtsIMutI	CAGTG	2 cut(s)	465, 747
Cac8I	GCNNGC	2 cut(s)	785, 789
Csp6I	GTAC	4 cut(s)	156, 615, 756, 810
CviAII	CATG	1 cut(s)	784
CviQI	GTAC	4 cut(s)	156, 615, 756, 810
DdeI	CTNAG	1 cut(s)	367
DpnI	GATC	3 cut(s)	121, 680, 800
DpnII	GATC	3 cut(s)	119, 678, 798
DraIII	CACNNNGTG	2 cut(s)	751, 753
EaeI	YGGCCR	1 cut(s)	723
Eam1104I	CTCTTC	2 cut(s)	549, 842
EarI	CTCTTC	2 cut(s)	549, 842
Eco32I	GATATC	1 cut(s)	429
Eco57I	CTGAAG	1 cut(s)	135
Eco88I	CYCGRG	1 cut(s)	563
Eco91I	GGTNACC	1 cut(s)	665
EcoO65I	GGTNACC	1 cut(s)	665
EcoRV	GATATC	1 cut(s)	429
EcoT22I	ATGCAT	1 cut(s)	472
FaeI	CATG	1 cut(s)	787
FaiI	YATR	7 cut(s)	308, 329, 383, 389, 468, 716, 785
FalI	AAGNNNNNCTT	2 cut(s)	572, 604
FatI	CATG	1 cut(s)	783
FblI	GTMKAC	2 cut(s)	186, 509
Fnu4HI	GCNGC	2 cut(s)	315, 453
FokI	GGATG	2 cut(s)	308, 321
Fsp4HI	GCNGC	2 cut(s)	315, 453
FspBI	CTAG	4 cut(s)	215, 237, 653, 764
GluI	GCNGC	2 cut(s)	315, 453
GsuI	CTGGAG	1 cut(s)	650
HaeIII	GGCC	1 cut(s)	725
HapII	CCGG	1 cut(s)	72
Hin1II	CATG	1 cut(s)	787
HinfI	GANTC	8 cut(s)	31, 80, 110, 211, 515, 566, 632, 700
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	2 cut(s)	274, 677
Hpy166II	GTNNAC	4 cut(s)	187, 362, 510, 756
Hpy188I	TCNGA	2 cut(s)	115, 531
Hpy188III	TCNNGA	5 cut(s)	77, 215, 268, 606, 629
Hpy8I	GTNNAC	4 cut(s)	187, 362, 510, 756
Hpy99I	CGWCG	3 cut(s)	41, 144, 597
HpyAV	CCTTC	3 cut(s)	110, 598, 646
HpyCH4III	ACNGT	7 cut(s)	181, 349, 460, 671, 751, 814, 823
HpyCH4IV	ACGT	1 cut(s)	808
HpyCH4V	TGCA	2 cut(s)	362, 470
HpyF10VI	GCNNNNNNNGC	4 cut(s)	323, 368, 689, 731
HpyF3I	CTNAG	1 cut(s)	367
HpySE526I	ACGT	1 cut(s)	808
Hsp92II	CATG	1 cut(s)	787
Kzo9I	GATC	3 cut(s)	119, 678, 798
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	9 cut(s)	62, 85, 108, 342, 384, 555, 614, 689, 773
Lsp1109I	GCAGC	1 cut(s)	439
LweI	GCATC	2 cut(s)	214, 238
MaeI	CTAG	4 cut(s)	215, 237, 653, 764
MaeII	ACGT	1 cut(s)	808
MaeIII	GTNAC	2 cut(s)	280, 665
MalI	GATC	3 cut(s)	121, 680, 800
MboI	GATC	3 cut(s)	119, 678, 798
MboII	GAAGA	7 cut(s)	40, 43, 54, 544, 566, 592, 829
MflI	RGATCY	2 cut(s)	119, 798
MhlI	GDGCHC	3 cut(s)	202, 364, 465
MlsI	TGGCCA	1 cut(s)	725
MluCI	AATT	1 cut(s)	165
MluNI	TGGCCA	1 cut(s)	725
MlyI	GAGTC	3 cut(s)	575, 641, 694
MmeI	TCCRAC	2 cut(s)	754, 805
MnlI	CCTC	9 cut(s)	65, 426, 498, 538, 770, 821, 851, 868, 882
Mox20I	TGGCCA	1 cut(s)	725
Mph1103I	ATGCAT	1 cut(s)	472
MscI	TGGCCA	1 cut(s)	725
MseI	TTAA	1 cut(s)	644
MslI	CAYNNNNRTG	1 cut(s)	719
Msp20I	TGGCCA	1 cut(s)	725
MspI	CCGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	4 cut(s)	323, 368, 689, 731
NdeII	GATC	3 cut(s)	119, 678, 798
NlaIII	CATG	1 cut(s)	787
NmeAIII	GCCGAG	1 cut(s)	822
NmuCI	GTSAC	2 cut(s)	280, 665
NsiI	ATGCAT	1 cut(s)	472
NspI	RCATGY	1 cut(s)	787
PaeI	GCATGC	1 cut(s)	787
PaeR7I	CTCGAG	1 cut(s)	563
PcsI	WCGNNNNNNNCGW	1 cut(s)	266
PfeI	GAWTC	5 cut(s)	31, 80, 110, 211, 515
Pfl23II	CGTACG	1 cut(s)	809
PkrI	GCNGC	2 cut(s)	316, 454
PleI	GAGTC	3 cut(s)	574, 640, 694
PpsI	GAGTC	3 cut(s)	574, 640, 694
PsiI	TTATAA	1 cut(s)	308
PspEI	GGTNACC	1 cut(s)	665
PspLI	CGTACG	1 cut(s)	809
PspXI	VCTCGAGB	1 cut(s)	563
PsuI	RGATCY	2 cut(s)	119, 798
RsaI	GTAC	4 cut(s)	157, 616, 757, 811
RsaNI	GTAC	4 cut(s)	156, 615, 756, 810
RseI	CAYNNNNRTG	1 cut(s)	719
SaqAI	TTAA	1 cut(s)	644
SatI	GCNGC	2 cut(s)	315, 453
Sau3AI	GATC	3 cut(s)	119, 678, 798
SchI	GAGTC	3 cut(s)	575, 641, 694
SduI	GDGCHC	3 cut(s)	202, 364, 465
SfaNI	GCATC	2 cut(s)	214, 238
SfcI	CTRYAG	1 cut(s)	456
Sfr274I	CTCGAG	1 cut(s)	563
SlaI	CTCGAG	1 cut(s)	563
SmiMI	CAYNNNNRTG	1 cut(s)	719
SmlI	CTYRAG	2 cut(s)	563, 604
SmoI	CTYRAG	2 cut(s)	563, 604
SphI	GCATGC	1 cut(s)	787
Sse9I	AATT	1 cut(s)	165
SsiI	CCGC	1 cut(s)	314
SspI	AATATT	2 cut(s)	193, 624
SspMI	CTAG	4 cut(s)	215, 237, 653, 764
TaaI	ACNGT	7 cut(s)	181, 349, 460, 671, 751, 814, 823
TaiI	ACGT	1 cut(s)	811
TaqI	TCGA	4 cut(s)	260, 269, 431, 564
TasI	AATT	1 cut(s)	165
TatI	WGTACW	1 cut(s)	755
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	5 cut(s)	31, 80, 110, 211, 515
Tru1I	TTAA	1 cut(s)	644
Tru9I	TTAA	1 cut(s)	644
TscAI	CASTG	2 cut(s)	465, 754
TseFI	GTSAC	2 cut(s)	280, 665
TseI	GCWGC	1 cut(s)	452
Tsp45I	GTSAC	2 cut(s)	280, 665
TspDTI	ATGAA	2 cut(s)	312, 628
TspGWI	ACGGA	1 cut(s)	581
TspRI	CASTG	2 cut(s)	465, 754
VneI	GTGCAC	1 cut(s)	360
XbaI	TCTAGA	1 cut(s)	214
XceI	RCATGY	1 cut(s)	787
XhoI	CTCGAG	1 cut(s)	563
XmiI	GTMKAC	2 cut(s)	186, 509
XspI	CTAG	4 cut(s)	215, 237, 653, 764
Zsp2I	ATGCAT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.