Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0009329

Physical Location & Seq

Genomic Coordinates Reverse (-)

9356186 .. 9375035

Gene Structure 18850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG063200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGTGGTATTGGGAATTAAAAGGACTGTAGAAGAGAAACTTGAGTCTGGACAGGGGAAGACAACTTTCCGCCGTTTCTTTTCTAGATTTTGTACACCAATCTTTTTGGAGTCATTCGTTCTAACATTTTTAGCTGAGTGGGGAGATCGTAGCCAAATAGCGACAATCGCTGGAATTGCTACCAATGTTCTGGAGTTTTTTGGGTCTTGCAGTTCACTGATAAGAGTAGTGAGTTTGGGAACTGTGGGGTTACATCAGGGTTGGAGGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

90

Amino Acids

10.05

Weight (kDa)

9.1

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	36 - 79	2.2e-07	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36290 AT5G36290
fragaria_vesca	FvH4_6g00560
malus_domestica	MD04G1244200.v1.1 MD12G1260000.v1.1
prunus_persica	Prupe.6G360700_v2.0.a1 Prupe.6G360700_v2.0.a1
pyrus_communis	pycom04g21510 pycom12g23810
rosa_chinensis	RchiOBHm_Chr3g0447951
rosa_laevigata	RLG00000025958
rosa_multiflora	Rmu_sc0005969.1_g000006 Rmu_sc0033046.1_g000001 Rmu_sc0039980.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426140
rosa_rugosa	Rorug01G0061500.1 Rorug02G0607300
rosa_samantha	Rh1BG063200 Rh3BG006200 Rh3CG006400 Rh3DG006800
rosa_wichuraiana	Rw3G000520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	70
AfaI	GTAC	1 cut(s)	94
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	65
BceAI	ACGGC	1 cut(s)	57
BfaI	CTAG	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	65
BpmI	CTGGAG	1 cut(s)	212
BpuEI	CTTGAG	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	126
Bsp1407I	TGTACA	1 cut(s)	92
Bsp143I	GATC	1 cut(s)	145
BspACI	CCGC	1 cut(s)	70
BspCNI	CTCAG	1 cut(s)	127
BsrGI	TGTACA	1 cut(s)	92
BssMI	GATC	1 cut(s)	145
Bst4CI	ACNGT	2 cut(s)	28, 244
Bst6I	CTCTTC	1 cut(s)	27
BstAUI	TGTACA	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	135
BstKTI	GATC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 176
BstSFI	CTRYAG	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	65
BstXI	CCANNNNNNTGG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	93
CviJI	RGCY	2 cut(s)	134, 153
CviKI_1	RGCY	2 cut(s)	134, 153
CviQI	GTAC	1 cut(s)	93
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
EciI	GGCGGA	1 cut(s)	59
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FspBI	CTAG	1 cut(s)	84
GsuI	CTGGAG	1 cut(s)	212
HinfI	GANTC	2 cut(s)	44, 110
Hpy166II	GTNNAC	2 cut(s)	95, 215
Hpy188III	TCNNGA	3 cut(s)	48, 84, 191
Hpy8I	GTNNAC	2 cut(s)	95, 215
HpyCH4III	ACNGT	2 cut(s)	28, 244
HpyCH4V	TGCA	1 cut(s)	210
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 176
HpyF3I	CTNAG	1 cut(s)	135
Kzo9I	GATC	1 cut(s)	145
LpnPI	CCDG	5 cut(s)	33, 38, 156, 176, 242
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	249
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	2 cut(s)	44, 70
MluCI	AATT	2 cut(s)	15, 174
MlyI	GAGTC	2 cut(s)	53, 119
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	1 cut(s)	258
MseI	TTAA	1 cut(s)	18
MwoI	GCNNNNNNNGC	2 cut(s)	167, 176
NdeII	GATC	1 cut(s)	145
PleI	GAGTC	2 cut(s)	52, 118
PpsI	GAGTC	2 cut(s)	52, 118
RsaI	GTAC	1 cut(s)	94
RsaNI	GTAC	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	18
Sau3AI	GATC	1 cut(s)	145
SchI	GAGTC	2 cut(s)	53, 119
SetI	ASST	2 cut(s)	136, 269
SfcI	CTRYAG	1 cut(s)	27
SgeI	CNNG	8 cut(s)	53, 60, 65, 96, 183, 203, 219, 269
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	2 cut(s)	15, 174
SsiI	CCGC	1 cut(s)	70
SspMI	CTAG	1 cut(s)	84
TaaI	ACNGT	2 cut(s)	28, 244
TasI	AATT	2 cut(s)	15, 174
TatI	WGTACW	1 cut(s)	92
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	1 cut(s)	222
TspRI	CASTG	1 cut(s)	222
XbaI	TCTAGA	1 cut(s)	83
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.