Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033046.1

Orthogroup ID

OG0009329

Physical Location & Seq

Genomic Coordinates Reverse (-)

352 .. 1721

Gene Structure 1370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033046.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

gtagaagagaaacttgagtctggacaggggaagacaactttccgccgtttcttttctagattttgtacaccaatctttttggagtcattcgttctaacatttttagctgagtggggagatcgtagccaaatagcgacaatcgctctggcaacccacaaaaatgcagtaggagttgctgtaggtgcaacattaggacataccatctgcacgtctgtggctgtggtgggagggagcatgttggcatccaaaatctcccaaaggacagtcgctaccgtcggaggcttgctcttcctgtgcttttctttgtcctcctatttttatcctcctctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

110

Amino Acids

11.83

Weight (kDa)

8.99

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36290 AT5G36290
fragaria_vesca	FvH4_6g00560
malus_domestica	MD04G1244200.v1.1 MD12G1260000.v1.1
prunus_persica	Prupe.6G360700_v2.0.a1 Prupe.6G360700_v2.0.a1
pyrus_communis	pycom04g21510 pycom12g23810
rosa_chinensis	RchiOBHm_Chr3g0447951
rosa_laevigata	RLG00000025958
rosa_multiflora	Rmu_sc0005969.1_g000006 Rmu_sc0033046.1_g000001 Rmu_sc0039980.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426140
rosa_rugosa	Rorug01G0061500.1 Rorug02G0607300
rosa_samantha	Rh1BG063200 Rh3BG006200 Rh3CG006400 Rh3DG006800
rosa_wichuraiana	Rw3G000520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	43
AfaI	GTAC	1 cut(s)	67
AjiI	CACGTC	1 cut(s)	210
AleI	CACNNNNGTG	1 cut(s)	212
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	38
BccI	CCATC	1 cut(s)	209
BceAI	ACGGC	1 cut(s)	30
BfaI	CTAG	1 cut(s)	57
BfmI	CTRYAG	1 cut(s)	177
BmgBI	CACGTC	1 cut(s)	210
BmsI	GCATC	1 cut(s)	251
BpiI	GAAGAC	1 cut(s)	38
BplI	GAGNNNNNCTC	2 cut(s)	270, 302
BpuEI	CTTGAG	1 cut(s)	35
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
BseGI	GGATG	1 cut(s)	242
BseMII	CTCAG	1 cut(s)	99
BseRI	GAGGAG	1 cut(s)	315
BsgI	GTGCAG	1 cut(s)	190
Bsp1407I	TGTACA	1 cut(s)	65
Bsp143I	GATC	1 cut(s)	118
BspACI	CCGC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	100
BspQI	GCTCTTC	1 cut(s)	293
BsrGI	TGTACA	1 cut(s)	65
BssMI	GATC	1 cut(s)	118
Bst4CI	ACNGT	2 cut(s)	265, 274
Bst6I	CTCTTC	1 cut(s)	293
BstAUI	TGTACA	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	242
BstKTI	GATC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 182
BstNSI	RCATGY	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	177
BstV2I	GAAGAC	1 cut(s)	38
BtrI	CACGTC	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	242
Cac8I	GCNNGC	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	66
CviAII	CATG	1 cut(s)	235
CviJI	RGCY	4 cut(s)	107, 126, 218, 282
CviKI_1	RGCY	4 cut(s)	107, 126, 218, 282
CviQI	GTAC	1 cut(s)	66
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
EciI	GGCGGA	1 cut(s)	32
FaeI	CATG	1 cut(s)	238
FaiI	YATR	3 cut(s)	198, 236, 331
FalI	AAGNNNNNCTT	1 cut(s)	29
FatI	CATG	1 cut(s)	234
FokI	GGATG	1 cut(s)	229
FspBI	CTAG	1 cut(s)	57
Hin1II	CATG	1 cut(s)	238
HinfI	GANTC	2 cut(s)	17, 83
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188I	TCNGA	1 cut(s)	278
Hpy188III	TCNNGA	2 cut(s)	21, 57
Hpy8I	GTNNAC	1 cut(s)	68
Hpy99I	CGWCG	1 cut(s)	278
HpyCH4III	ACNGT	2 cut(s)	265, 274
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	3 cut(s)	164, 185, 207
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 182
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	209
Hsp92II	CATG	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	118
LguI	GCTCTTC	1 cut(s)	293
LmnI	GCTCC	1 cut(s)	231
LpnPI	CCDG	4 cut(s)	6, 11, 131, 305
LweI	GCATC	1 cut(s)	251
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	1 cut(s)	209
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	3 cut(s)	17, 43, 280
MlyI	GAGTC	2 cut(s)	26, 92
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	4 cut(s)	221, 272, 319, 333
MslI	CAYNNNNRTG	2 cut(s)	159, 212
MwoI	GCNNNNNNNGC	2 cut(s)	140, 182
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	1 cut(s)	238
NspI	RCATGY	1 cut(s)	238
OliI	CACNNNNGTG	1 cut(s)	212
PciSI	GCTCTTC	1 cut(s)	293
PleI	GAGTC	2 cut(s)	25, 91
PpsI	GAGTC	2 cut(s)	25, 91
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
RseI	CAYNNNNRTG	2 cut(s)	159, 212
SapI	GCTCTTC	1 cut(s)	293
Sau3AI	GATC	1 cut(s)	118
SchI	GAGTC	2 cut(s)	26, 92
SetI	ASST	3 cut(s)	109, 184, 212
SfaNI	GCATC	1 cut(s)	251
SfcI	CTRYAG	1 cut(s)	177
SgeI	CNNG	9 cut(s)	26, 33, 38, 69, 158, 220, 247, 295, 304
SmiMI	CAYNNNNRTG	2 cut(s)	159, 212
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	1 cut(s)	57
TaaI	ACNGT	2 cut(s)	265, 274
TaiI	ACGT	1 cut(s)	212
TatI	WGTACW	1 cut(s)	65
XbaI	TCTAGA	1 cut(s)	56
XceI	RCATGY	1 cut(s)	238
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.