Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0009329

Physical Location & Seq

Genomic Coordinates Reverse (-)

440256 .. 443282

Gene Structure 3027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G000520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGGTTTCCGAGCAATTGCATTCCTAGTGTTGCTACTCCTCTCCTCCACCGTTTCTGCTCAGGAGTCTGAGGTGCAAAACGAGAGGCGGGAGTCCGGCGGATCCTTAGATCTGGGCCGGCGTAGCAAGATTAATTTGAATCTTCTCGAAGCGCTTGGAGAGAATGGCTCCGATGGAGTTGTTATTGGTCTCAATGTGGACTCCGGTCTTGGAATTTTCGATGCATTTGTTGCAAGCTTTTCAATGATACTCGTTAGTGAGATTGGAGATGAAACGTTTATAATAGCAGCTCTTATGGCAATGCGCCACCCCAAGTCAATTGTCCTATCTGGTGCACTCTCTGCCCTGGTCGTAATGACGATACTTTCCACCGGACTTGGTAGGATTGTGCCAAATTTGATATCAAGGAAGCATACAAATAGTGCAGCTACAGTTCTTTATCTATTTTTCGGGCTGCGGTTGCTTTACATTGCTTGGAGATCTGATCCAAAAGGTTCACAGAAGAAAGAAATAGAAGAAGTAGAAGAGAAACTTGAGTCTGGACAGGGGAAGACAACTTTCCGCCGTTTCTTTTCTAGATTTTGTACACCAATCTTTTTGGAGTCATTCGTTCTAACATTTTTAGCTGAGTGGGGAGATCGTAGCCAAATAGCGACAATCGCTCTGGCAACCCACAAAAATGCAGTAGGAGTTGCAGTAGGTGCAACATTAGGACATACCATCTGCACGTCTGTGGCTGTGGTGGGAGGGAGCATGTTGGCATCCAAAATCTCCCAAAGGACAGTTGCTACCGTCGGAGGCTTGCTCTTCCTGTGCTTCTCTTTGTCCTCCTATTTTTATCCTCCTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

283

Amino Acids

30.44

Weight (kDa)

8.45

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	78 - 151	9e-19	Divalent cation/proton antiporter GDT1
GDT1	PF01169	201 - 273	6.8e-25	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36290 AT5G36290
fragaria_vesca	FvH4_6g00560
malus_domestica	MD04G1244200.v1.1 MD12G1260000.v1.1
prunus_persica	Prupe.6G360700_v2.0.a1 Prupe.6G360700_v2.0.a1
pyrus_communis	pycom04g21510 pycom12g23810
rosa_chinensis	RchiOBHm_Chr3g0447951
rosa_laevigata	RLG00000025958
rosa_multiflora	Rmu_sc0005969.1_g000006 Rmu_sc0033046.1_g000001 Rmu_sc0039980.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426140
rosa_rugosa	Rorug01G0061500.1 Rorug02G0607300
rosa_samantha	Rh1BG063200 Rh3BG006200 Rh3CG006400 Rh3DG006800
rosa_wichuraiana	Rw3G000520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	281
AciI	CCGC	4 cut(s)	88, 99, 457, 562
AclI	AACGTT	1 cut(s)	275
AclWI	GGATC	3 cut(s)	96, 109, 479
AcsI	RAATTY	2 cut(s)	213, 394
AfaI	GTAC	1 cut(s)	586
AfeI	AGCGCT	1 cut(s)	153
AgsI	TTSAA	2 cut(s)	139, 243
AjiI	CACGTC	1 cut(s)	729
AjnI	CCWGG	1 cut(s)	345
AleI	CACNNNNGTG	1 cut(s)	731
AluBI	AGCT	4 cut(s)	237, 290, 428, 626
AluI	AGCT	4 cut(s)	237, 290, 428, 626
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	1 cut(s)	194
Alw44I	GTGCAC	1 cut(s)	333
AlwI	GGATC	3 cut(s)	96, 109, 479
Aor51HI	AGCGCT	1 cut(s)	153
AoxI	GGCC	1 cut(s)	115
ApaLI	GTGCAC	1 cut(s)	333
ApeKI	GCWGC	3 cut(s)	287, 425, 454
ApoI	RAATTY	2 cut(s)	213, 394
AseI	ATTAAT	1 cut(s)	132
AspLEI	GCGC	2 cut(s)	154, 306
AspS9I	GGNCC	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	337
BamHI	GGATCC	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	557
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	3 cut(s)	299, 437, 441
BccI	CCATC	2 cut(s)	167, 728
BceAI	ACGGC	1 cut(s)	549
BciT130I	CCWGG	1 cut(s)	347
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	2 cut(s)	26, 576
BfmI	CTRYAG	1 cut(s)	429
BfoI	RGCGCY	1 cut(s)	155
BglII	AGATCT	2 cut(s)	109, 479
BisI	GCNGC	3 cut(s)	288, 426, 455
BlsI	GCNGC	3 cut(s)	289, 427, 456
Bme1390I	CCNGG	1 cut(s)	347
BmgBI	CACGTC	1 cut(s)	729
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	2 cut(s)	103, 169
BmrFI	CCNGG	1 cut(s)	347
BmsI	GCATC	2 cut(s)	211, 770
BoxI	GACNNNNGTC	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	557
BplI	GAGNNNNNCTC	4 cut(s)	152, 184, 789, 821
Bpu10I	CCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	554
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	345
BsaWI	WCCGGW	2 cut(s)	203, 371
BsaXI	ACNNNNNCTCC	2 cut(s)	681, 711
Bse118I	RCCGGY	1 cut(s)	117
Bse3DI	GCAATG	2 cut(s)	306, 468
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	1 cut(s)	345
BseGI	GGATG	1 cut(s)	761
BseMI	GCAATG	2 cut(s)	306, 468
BseMII	CTCAG	3 cut(s)	60, 74, 618
BseRI	GAGGAG	3 cut(s)	29, 34, 834
BseSI	GKGCMC	1 cut(s)	337
BseXI	GCAGC	3 cut(s)	299, 437, 441
BsgI	GTGCAG	2 cut(s)	444, 709
BshFI	GGCC	1 cut(s)	117
BsiHKAI	GWGCWC	1 cut(s)	337
BsiSI	CCGG	4 cut(s)	96, 118, 204, 372
BsmAI	GTCTC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	117
Bso31I	GGTCTC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp1407I	TGTACA	1 cut(s)	584
Bsp143I	GATC	5 cut(s)	101, 109, 479, 484, 637
BspACI	CCGC	4 cut(s)	88, 99, 457, 562
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	3 cut(s)	61, 73, 619
BspLI	GGNNCC	2 cut(s)	103, 169
BspPI	GGATC	3 cut(s)	96, 109, 479
BspQI	GCTCTTC	1 cut(s)	812
BspTNI	GGTCTC	1 cut(s)	194
BsrDI	GCAATG	2 cut(s)	306, 468
BsrFI	RCCGGY	1 cut(s)	117
BsrGI	TGTACA	1 cut(s)	584
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	345
BssMI	GATC	5 cut(s)	101, 109, 479, 484, 637
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	4 cut(s)	52, 433, 784, 793
Bst6I	CTCTTC	2 cut(s)	519, 812
BstAPI	GCANNNNNTGC	3 cut(s)	230, 341, 701
BstAUI	TGTACA	1 cut(s)	584
BstC8I	GCNNGC	3 cut(s)	119, 235, 803
BstDEI	CTNAG	4 cut(s)	60, 69, 106, 627
BstF5I	GGATG	1 cut(s)	761
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	2 cut(s)	154, 306
BstKTI	GATC	5 cut(s)	104, 112, 482, 487, 640
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	5 cut(s)	101, 109, 479, 484, 637
BstMWI	GCNNNNNNNGC	7 cut(s)	123, 230, 296, 341, 460, 659, 701
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	1 cut(s)	757
BstPAI	GACNNNNGTC	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	345
BstSFI	CTRYAG	1 cut(s)	429
BstSLI	GKGCMC	1 cut(s)	337
BstV1I	GCAGC	3 cut(s)	299, 437, 441
BstV2I	GAAGAC	1 cut(s)	557
BstX2I	RGATCY	3 cut(s)	101, 109, 479
BstYI	RGATCY	3 cut(s)	101, 109, 479
BsuRI	GGCC	1 cut(s)	117
BtrI	CACGTC	1 cut(s)	729
BtsCI	GGATG	1 cut(s)	761
Cac8I	GCNNGC	3 cut(s)	119, 235, 803
CfoI	GCGC	2 cut(s)	154, 306
Cfr10I	RCCGGY	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	585
CspCI	CAANNNNNGTGG	2 cut(s)	358, 393
CviAII	CATG	1 cut(s)	754
CviQI	GTAC	1 cut(s)	585
DdeI	CTNAG	4 cut(s)	60, 69, 106, 627
DpnI	GATC	5 cut(s)	103, 111, 481, 486, 639
DpnII	GATC	5 cut(s)	101, 109, 479, 484, 637
Eam1104I	CTCTTC	2 cut(s)	519, 812
EarI	CTCTTC	2 cut(s)	519, 812
EciI	GGCGGA	2 cut(s)	114, 551
Eco31I	GGTCTC	1 cut(s)	194
Eco32I	GATATC	1 cut(s)	402
Eco47III	AGCGCT	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	345
EcoRV	GATATC	1 cut(s)	402
EcoT22I	ATGCAT	1 cut(s)	226
FaeI	CATG	1 cut(s)	757
FaiI	YATR	6 cut(s)	281, 296, 414, 717, 755, 850
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FatI	CATG	1 cut(s)	753
FauI	CCCGC	1 cut(s)	81
Fnu4HI	GCNGC	3 cut(s)	288, 426, 455
FokI	GGATG	1 cut(s)	748
Fsp4HI	GCNGC	3 cut(s)	288, 426, 455
FspBI	CTAG	2 cut(s)	26, 576
GlaI	GCGC	2 cut(s)	153, 305
GluI	GCNGC	3 cut(s)	288, 426, 455
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	4 cut(s)	96, 118, 204, 372
HhaI	GCGC	2 cut(s)	154, 306
Hin1II	CATG	1 cut(s)	757
Hin6I	GCGC	2 cut(s)	152, 304
HinP1I	GCGC	2 cut(s)	152, 304
HindIII	AAGCTT	1 cut(s)	235
HinfI	GANTC	6 cut(s)	65, 92, 139, 200, 536, 602
HpaII	CCGG	4 cut(s)	96, 118, 204, 372
Hpy166II	GTNNAC	4 cut(s)	199, 335, 497, 587
Hpy188I	TCNGA	5 cut(s)	11, 70, 172, 484, 797
Hpy188III	TCNNGA	4 cut(s)	62, 146, 540, 576
Hpy8I	GTNNAC	4 cut(s)	199, 335, 497, 587
Hpy99I	CGWCG	1 cut(s)	797
HpyCH4III	ACNGT	4 cut(s)	52, 433, 784, 793
HpyCH4IV	ACGT	2 cut(s)	275, 728
HpyF10VI	GCNNNNNNNGC	7 cut(s)	123, 230, 296, 341, 460, 659, 701
HpyF3I	CTNAG	4 cut(s)	60, 69, 106, 627
HpySE526I	ACGT	2 cut(s)	275, 728
Hsp92II	CATG	1 cut(s)	757
HspAI	GCGC	2 cut(s)	152, 304
KroI	GCCGGC	1 cut(s)	117
KroNI	GCCGGC	1 cut(s)	119
Kzo9I	GATC	5 cut(s)	101, 109, 479, 484, 637
LguI	GCTCTTC	1 cut(s)	812
LmnI	GCTCC	2 cut(s)	173, 750
Lsp1109I	GCAGC	3 cut(s)	299, 437, 441
LweI	GCATC	2 cut(s)	211, 770
MaeI	CTAG	2 cut(s)	26, 576
MaeII	ACGT	2 cut(s)	275, 728
MalI	GATC	5 cut(s)	103, 111, 481, 486, 639
MboI	GATC	5 cut(s)	101, 109, 479, 484, 637
MboII	GAAGA	6 cut(s)	134, 514, 527, 536, 562, 799
MfeI	CAATTG	2 cut(s)	15, 318
MflI	RGATCY	3 cut(s)	101, 109, 479
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	5 cut(s)	15, 133, 213, 318, 394
MlyI	GAGTC	5 cut(s)	74, 101, 194, 545, 611
MmeI	TCCRAC	1 cut(s)	775
MnlI	CCTC	8 cut(s)	50, 55, 64, 78, 740, 791, 838, 852
Mph1103I	ATGCAT	1 cut(s)	226
MroNI	GCCGGC	1 cut(s)	117
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	2 cut(s)	678, 731
MspI	CCGG	4 cut(s)	96, 118, 204, 372
MspR9I	CCNGG	1 cut(s)	347
MunI	CAATTG	2 cut(s)	15, 318
Mva1269I	GAATGC	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	7 cut(s)	123, 230, 296, 341, 460, 659, 701
NaeI	GCCGGC	1 cut(s)	119
NdeII	GATC	5 cut(s)	101, 109, 479, 484, 637
NgoMIV	GCCGGC	1 cut(s)	117
NlaIII	CATG	1 cut(s)	757
NlaIV	GGNNCC	2 cut(s)	103, 169
NsiI	ATGCAT	1 cut(s)	226
NspI	RCATGY	1 cut(s)	757
OliI	CACNNNNGTG	1 cut(s)	731
PciSI	GCTCTTC	1 cut(s)	812
PctI	GAATGC	1 cut(s)	20
PdiI	GCCGGC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	139
PkrI	GCNGC	3 cut(s)	289, 427, 456
PleI	GAGTC	5 cut(s)	73, 100, 194, 544, 610
PpsI	GAGTC	5 cut(s)	73, 100, 194, 544, 610
PshAI	GACNNNNGTC	1 cut(s)	204
PshBI	ATTAAT	1 cut(s)	132
PsiI	TTATAA	1 cut(s)	281
Psp1406I	AACGTT	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	2 cut(s)	103, 169
PspPI	GGNCC	1 cut(s)	115
PsuI	RGATCY	3 cut(s)	101, 109, 479
RsaI	GTAC	1 cut(s)	586
RsaNI	GTAC	1 cut(s)	585
RseI	CAYNNNNRTG	2 cut(s)	678, 731
SapI	GCTCTTC	1 cut(s)	812
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	3 cut(s)	288, 426, 455
Sau3AI	GATC	5 cut(s)	101, 109, 479, 484, 637
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	5 cut(s)	74, 101, 194, 545, 611
ScrFI	CCNGG	1 cut(s)	347
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	9 cut(s)	75, 239, 278, 292, 430, 496, 628, 703, 731
SfaNI	GCATC	2 cut(s)	211, 770
SfcI	CTRYAG	1 cut(s)	429
SmiMI	CAYNNNNRTG	2 cut(s)	678, 731
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	5 cut(s)	15, 133, 213, 318, 394
SsiI	CCGC	4 cut(s)	88, 99, 457, 562
SspMI	CTAG	2 cut(s)	26, 576
StyD4I	CCNGG	1 cut(s)	345
TaaI	ACNGT	4 cut(s)	52, 433, 784, 793
TaiI	ACGT	2 cut(s)	278, 731
TaqI	TCGA	2 cut(s)	147, 219
TasI	AATT	5 cut(s)	15, 133, 213, 318, 394
TatI	WGTACW	1 cut(s)	584
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TseI	GCWGC	3 cut(s)	287, 425, 454
TspDTI	ATGAA	1 cut(s)	285
VneI	GTGCAC	1 cut(s)	333
VspI	ATTAAT	1 cut(s)	132
XapI	RAATTY	2 cut(s)	213, 394
XbaI	TCTAGA	1 cut(s)	575
XceI	RCATGY	1 cut(s)	757
XspI	CTAG	2 cut(s)	26, 576
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.