Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009329

Physical Location & Seq

Genomic Coordinates Reverse (-)

328790 .. 332216

Gene Structure 3427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g00560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGGTTTCGGGTTCAATTGTGGAGTTGTTGCATTCTTGGTGCTGCTACTCCTCTTCACCGTTTCTGCTCAGGAGTCTGAGGTCGAAAACCAGAGGCGAGAGTCCGGCGGATCCTTAGATCTGGGCCGACGTAGCAAGATTAATTTGAATCTTCTTGAAGCTCTTGGAGAGAATGGCGCCGATGCAGTTGCTATTGGTCTCAATGTGGACTCCGGTCTTGGGATTTTCGATGCCTTTGTTGCTAGCTTTTCAATGATCCTCGTCAGTGAGATTGGAGATGAAACATTCATAATAGCAGCTCTCATGGCAATGCGCCATCCCAAGTCAATTGTCCTATCCGGTGCACTCTCTGCCCTGGTTGTAATGACTGTACTTTCTACTGGACTTGGTAGGATTGTGCCAAATTTGATATCAAGGAAGCATACAAATAGTGCAGCTACAGTCCTTTATCTGTTTTTCGGGCTGCGGTTACTTTACATTGCTTGGAGATCTGATCCAAAAGGTTCACAGAAGAAAGAAATAGAAGAAGTAGAAGAGAAACTTGAGTCTGGACAGGGGAAGACAACATTCCGCCGTTTCTTTTCTAGATTTTTGACACCAATCTTTTTGGAGTCATTCGTTCTAACATTTTTAGCTGAGTGGGGAGATCGTAGCCAAATAGCAACAATCGCTCTGGCAACCCACAAAAACGCAGTAGGAGTTGCGGTAGGTGCAACATTAGGACATACCATCTGCACATCTGTGGCTGTGGTGGGAGGGAGCATGTTGGCATCCAAAATCTCCCAAAGGACAGTCGCCACCGTCGGAGGCTTGCTCTTCCTATGCTTCTCTTTGTCCTCCTATTTCTATCCCCCTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

287

Amino Acids

30.71

Weight (kDa)

7.74

Isoelectric Point (pI)

36.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	81 - 154	5.7e-19	Divalent cation/proton antiporter GDT1
GDT1	PF01169	204 - 276	6.9e-25	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36290 AT5G36290
fragaria_vesca	FvH4_6g00560
malus_domestica	MD04G1244200.v1.1 MD12G1260000.v1.1
prunus_persica	Prupe.6G360700_v2.0.a1 Prupe.6G360700_v2.0.a1
pyrus_communis	pycom04g21510 pycom12g23810
rosa_chinensis	RchiOBHm_Chr3g0447951
rosa_laevigata	RLG00000025958
rosa_multiflora	Rmu_sc0005969.1_g000006 Rmu_sc0033046.1_g000001 Rmu_sc0039980.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426140
rosa_rugosa	Rorug01G0061500.1 Rorug02G0607300
rosa_samantha	Rh1BG063200 Rh3BG006200 Rh3CG006400 Rh3DG006800
rosa_wichuraiana	Rw3G000520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AciI	CCGC	4 cut(s)	108, 466, 571, 704
AclWI	GGATC	4 cut(s)	105, 118, 250, 488
AcsI	RAATTY	1 cut(s)	403
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	1 cut(s)	372
AfiI	CCNNNNNNNGG	1 cut(s)	219
AgsI	TTSAA	4 cut(s)	16, 148, 158, 252
AjnI	CCWGG	1 cut(s)	354
AleI	CACNNNNGTG	1 cut(s)	740
AluBI	AGCT	5 cut(s)	161, 246, 299, 437, 635
AluI	AGCT	5 cut(s)	161, 246, 299, 437, 635
Alw21I	GWGCWC	1 cut(s)	346
Alw26I	GTCTC	1 cut(s)	203
Alw44I	GTGCAC	1 cut(s)	342
AlwI	GGATC	4 cut(s)	105, 118, 250, 488
AoxI	GGCC	1 cut(s)	124
ApaLI	GTGCAC	1 cut(s)	342
ApeKI	GCWGC	4 cut(s)	43, 296, 434, 463
ApoI	RAATTY	1 cut(s)	403
AseI	ATTAAT	1 cut(s)	141
AspLEI	GCGC	2 cut(s)	179, 315
AspS9I	GGNCC	1 cut(s)	124
AsuHPI	GGTGA	1 cut(s)	49
AsuNHI	GCTAGC	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	346
BamHI	GGATCC	1 cut(s)	110
BanI	GGYRCC	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	566
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	4 cut(s)	30, 308, 446, 450
BccI	CCATC	2 cut(s)	324, 737
BceAI	ACGGC	1 cut(s)	558
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BciT130I	CCWGG	1 cut(s)	356
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	2 cut(s)	243, 585
BfmI	CTRYAG	1 cut(s)	438
BfoI	RGCGCY	1 cut(s)	180
BglII	AGATCT	2 cut(s)	118, 488
BisI	GCNGC	4 cut(s)	44, 297, 435, 464
BlsI	GCNGC	4 cut(s)	45, 298, 436, 465
Bme1390I	CCNGG	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	2 cut(s)	112, 178
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	3 cut(s)	172, 220, 779
BmtI	GCTAGC	1 cut(s)	246
BoxI	GACNNNNGTC	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	566
BplI	GAGNNNNNCTC	2 cut(s)	798, 830
Bpu10I	CCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	563
BsaHI	GRCGYC	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	354
BsaWI	WCCGGW	2 cut(s)	212, 338
BsaXI	ACNNNNNCTCC	2 cut(s)	690, 720
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse1I	ACTGG	1 cut(s)	385
Bse3DI	GCAATG	2 cut(s)	315, 477
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	2 cut(s)	316, 770
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMI	GCAATG	2 cut(s)	315, 477
BseMII	CTCAG	3 cut(s)	69, 83, 627
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	4 cut(s)	30, 308, 446, 450
BsgI	GTGCAG	2 cut(s)	453, 718
BshFI	GGCC	1 cut(s)	126
BshNI	GGYRCC	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	346
BsiSI	CCGG	3 cut(s)	105, 213, 339
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmAI	GTCTC	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	126
Bso31I	GGTCTC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp143I	GATC	6 cut(s)	110, 118, 255, 488, 493, 646
BspACI	CCGC	4 cut(s)	108, 466, 571, 704
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	3 cut(s)	70, 82, 628
BspLI	GGNNCC	2 cut(s)	112, 178
BspOI	GCTAGC	1 cut(s)	246
BspPI	GGATC	4 cut(s)	105, 118, 250, 488
BspQI	GCTCTTC	1 cut(s)	821
BspT107I	GGYRCC	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	203
BsrDI	GCAATG	2 cut(s)	315, 477
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	6 cut(s)	110, 118, 255, 488, 493, 646
BssNI	GRCGYC	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	5 cut(s)	61, 370, 442, 793, 802
Bst6I	CTCTTC	3 cut(s)	59, 528, 821
BstACI	GRCGYC	1 cut(s)	177
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstC8I	GCNNGC	2 cut(s)	244, 812
BstDEI	CTNAG	4 cut(s)	69, 78, 115, 636
BstF5I	GGATG	2 cut(s)	316, 770
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	2 cut(s)	179, 315
BstKTI	GATC	6 cut(s)	113, 121, 258, 491, 496, 649
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	6 cut(s)	110, 118, 255, 488, 493, 646
BstMWI	GCNNNNNNNGC	6 cut(s)	132, 239, 305, 350, 668, 710
BstNI	CCWGG	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	766
BstPAI	GACNNNNGTC	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	354
BstSFI	CTRYAG	1 cut(s)	438
BstSLI	GKGCMC	1 cut(s)	346
BstV1I	GCAGC	4 cut(s)	30, 308, 446, 450
BstV2I	GAAGAC	1 cut(s)	566
BstX2I	RGATCY	3 cut(s)	110, 118, 488
BstYI	RGATCY	3 cut(s)	110, 118, 488
BsuRI	GGCC	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	316, 770
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	2 cut(s)	244, 812
CfoI	GCGC	2 cut(s)	179, 315
Cfr13I	GGNCC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	2 cut(s)	304, 763
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	4 cut(s)	69, 78, 115, 636
DinI	GGCGCC	1 cut(s)	178
DpnI	GATC	6 cut(s)	112, 120, 257, 490, 495, 648
DpnII	GATC	6 cut(s)	110, 118, 255, 488, 493, 646
Eam1104I	CTCTTC	3 cut(s)	59, 528, 821
EarI	CTCTTC	3 cut(s)	59, 528, 821
EciI	GGCGGA	2 cut(s)	123, 560
Eco31I	GGTCTC	1 cut(s)	203
Eco32I	GATATC	1 cut(s)	411
EcoRII	CCWGG	1 cut(s)	354
EcoRV	GATATC	1 cut(s)	411
EgeI	GGCGCC	1 cut(s)	178
EheI	GGCGCC	1 cut(s)	178
FaeI	CATG	2 cut(s)	307, 766
FaiI	YATR	7 cut(s)	290, 305, 423, 726, 764, 823, 859
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FatI	CATG	2 cut(s)	303, 762
Fnu4HI	GCNGC	4 cut(s)	44, 297, 435, 464
FokI	GGATG	2 cut(s)	303, 757
Fsp4HI	GCNGC	4 cut(s)	44, 297, 435, 464
FspBI	CTAG	2 cut(s)	243, 585
GlaI	GCGC	2 cut(s)	178, 314
GluI	GCNGC	4 cut(s)	44, 297, 435, 464
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	3 cut(s)	105, 213, 339
HhaI	GCGC	2 cut(s)	179, 315
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	2 cut(s)	307, 766
Hin6I	GCGC	2 cut(s)	177, 313
HinP1I	GCGC	2 cut(s)	177, 313
HinfI	GANTC	6 cut(s)	74, 101, 148, 209, 545, 611
HpaII	CCGG	3 cut(s)	105, 213, 339
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	3 cut(s)	208, 344, 506
Hpy188I	TCNGA	3 cut(s)	79, 493, 806
Hpy188III	TCNNGA	4 cut(s)	71, 155, 549, 585
Hpy8I	GTNNAC	3 cut(s)	208, 344, 506
Hpy99I	CGWCG	2 cut(s)	132, 806
HpyCH4III	ACNGT	5 cut(s)	61, 370, 442, 793, 802
HpyCH4IV	ACGT	1 cut(s)	130
HpyCH4V	TGCA	6 cut(s)	32, 185, 344, 434, 713, 735
HpyF10VI	GCNNNNNNNGC	6 cut(s)	132, 239, 305, 350, 668, 710
HpyF3I	CTNAG	4 cut(s)	69, 78, 115, 636
HpySE526I	ACGT	1 cut(s)	130
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	307, 766
HspAI	GCGC	2 cut(s)	177, 313
KasI	GGCGCC	1 cut(s)	176
Kzo9I	GATC	6 cut(s)	110, 118, 255, 488, 493, 646
LguI	GCTCTTC	1 cut(s)	821
LmnI	GCTCC	1 cut(s)	759
Lsp1109I	GCAGC	4 cut(s)	30, 308, 446, 450
LweI	GCATC	3 cut(s)	172, 220, 779
MaeI	CTAG	2 cut(s)	243, 585
MaeII	ACGT	1 cut(s)	130
MaeIII	GTNAC	1 cut(s)	468
MalI	GATC	6 cut(s)	112, 120, 257, 490, 495, 648
MboI	GATC	6 cut(s)	110, 118, 255, 488, 493, 646
MboII	GAAGA	7 cut(s)	46, 143, 523, 536, 545, 571, 808
MfeI	CAATTG	2 cut(s)	16, 327
MflI	RGATCY	3 cut(s)	110, 118, 488
MhlI	GDGCHC	1 cut(s)	346
MluCI	AATT	4 cut(s)	16, 142, 327, 403
Mly113I	GGCGCC	1 cut(s)	177
MlyI	GAGTC	5 cut(s)	83, 110, 203, 554, 620
MmeI	TCCRAC	1 cut(s)	784
MnlI	CCTC	7 cut(s)	62, 73, 87, 269, 749, 800, 847
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	2 cut(s)	308, 740
MspI	CCGG	3 cut(s)	105, 213, 339
MspR9I	CCNGG	1 cut(s)	356
MunI	CAATTG	2 cut(s)	16, 327
Mva1269I	GAATGC	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	6 cut(s)	132, 239, 305, 350, 668, 710
NarI	GGCGCC	1 cut(s)	177
NdeII	GATC	6 cut(s)	110, 118, 255, 488, 493, 646
NheI	GCTAGC	1 cut(s)	242
NlaIII	CATG	2 cut(s)	307, 766
NlaIV	GGNNCC	2 cut(s)	112, 178
NspI	RCATGY	1 cut(s)	766
OliI	CACNNNNGTG	1 cut(s)	740
PciSI	GCTCTTC	1 cut(s)	821
PctI	GAATGC	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	148
PkrI	GCNGC	4 cut(s)	45, 298, 436, 465
PleI	GAGTC	5 cut(s)	82, 109, 203, 553, 619
PluTI	GGCGCC	1 cut(s)	180
PpsI	GAGTC	5 cut(s)	82, 109, 203, 553, 619
PshAI	GACNNNNGTC	1 cut(s)	213
PshBI	ATTAAT	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	112, 178
PspPI	GGNCC	1 cut(s)	124
PsuI	RGATCY	3 cut(s)	110, 118, 488
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
RseI	CAYNNNNRTG	2 cut(s)	308, 740
SapI	GCTCTTC	1 cut(s)	821
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	4 cut(s)	44, 297, 435, 464
Sau3AI	GATC	6 cut(s)	110, 118, 255, 488, 493, 646
Sau96I	GGNCC	1 cut(s)	124
SchI	GAGTC	5 cut(s)	83, 110, 203, 554, 620
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	1 cut(s)	346
SetI	ASST	9 cut(s)	84, 133, 163, 248, 301, 439, 505, 637, 712
SfaNI	GCATC	3 cut(s)	172, 220, 779
SfcI	CTRYAG	1 cut(s)	438
SfoI	GGCGCC	1 cut(s)	178
SmiMI	CAYNNNNRTG	2 cut(s)	308, 740
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
Sse9I	AATT	4 cut(s)	16, 142, 327, 403
SsiI	CCGC	4 cut(s)	108, 466, 571, 704
SspDI	GGCGCC	1 cut(s)	176
SspMI	CTAG	2 cut(s)	243, 585
StyD4I	CCNGG	1 cut(s)	354
TaaI	ACNGT	5 cut(s)	61, 370, 442, 793, 802
TaiI	ACGT	1 cut(s)	133
TaqI	TCGA	2 cut(s)	84, 228
TasI	AATT	4 cut(s)	16, 142, 327, 403
TatI	WGTACW	1 cut(s)	370
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	1 cut(s)	271
TseI	GCWGC	4 cut(s)	43, 296, 434, 463
TspDTI	ATGAA	2 cut(s)	277, 294
TspRI	CASTG	1 cut(s)	271
VneI	GTGCAC	1 cut(s)	342
VspI	ATTAAT	1 cut(s)	141
XapI	RAATTY	1 cut(s)	403
XbaI	TCTAGA	1 cut(s)	584
XceI	RCATGY	1 cut(s)	766
XspI	CTAG	2 cut(s)	243, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.