Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009329

Physical Location & Seq

Genomic Coordinates Forward (+)

22641928 .. 22644505

Gene Structure 2578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g21510.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGGGTTTCGCTCGATTCCCAGAACGATTGCGTACTCCCTCCCCCTCCTCTTGCTCCTCCTCCTTGCGGTTTCTGCTCAGGAGTCTGGGGCTGAAGCTGAGAGGGGAGGCTATGGGGGATCCAAAGATCTGGGCCGTCGTAGCAAGATAAAATTTGGTATTCTTGAAGTTAATACTCTTGGAGTCAAGACAGAGGGTGACTCAGTTGCTATCGGCCTCCACGTGGACTCAGGTCTTGGAGTTTTCGATGCCTTTGTTGCAAGCTTGTCAATGATACTAGTTAGTGAGATTGGAGACGAAACATTTATAATAGCAGCTCTTATGGCAATGCGTCACCCCAAGTCAATTGTTCTATCTGGTGCACTTTCAGCCTTGTTTATAATGACGGTACTTTCCACTGGACTTGGTAGGATTGTGCCAAACTTGATATCAAGGAAGCATACAAATAGTGCAGCTACAGTTCTTTATTTATTTTTTGGACTGAGGTTACTTTACATTGCTTGGATCGATCATCTGATTCTAAATCTTCCCAGAAGAAAGAAATTGAAGAAGTTGAAGAGAAACTTGAGTCTGGTCAGGGAAAGACACCCTTCCGCCGTTTCTTTTCCAGATTTTGTACACCTATCTTCTTGGAGTCATTCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

216

Amino Acids

23.48

Weight (kDa)

10.15

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36290 AT5G36290
fragaria_vesca	FvH4_6g00560
malus_domestica	MD04G1244200.v1.1 MD12G1260000.v1.1
prunus_persica	Prupe.6G360700_v2.0.a1 Prupe.6G360700_v2.0.a1
pyrus_communis	pycom04g21510 pycom12g23810
rosa_chinensis	RchiOBHm_Chr3g0447951
rosa_laevigata	RLG00000025958
rosa_multiflora	Rmu_sc0005969.1_g000006 Rmu_sc0033046.1_g000001 Rmu_sc0039980.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426140
rosa_rugosa	Rorug01G0061500.1 Rorug02G0607300
rosa_samantha	Rh1BG063200 Rh3BG006200 Rh3CG006400 Rh3DG006800
rosa_wichuraiana	Rw3G000520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	308, 380
AciI	CCGC	2 cut(s)	68, 594
AclWI	GGATC	3 cut(s)	114, 127, 512
AcsI	RAATTY	1 cut(s)	152
AcuI	CTGAAG	1 cut(s)	114
AcvI	CACGTG	1 cut(s)	223
AfaI	GTAC	3 cut(s)	35, 390, 618
AfiI	CCNNNNNNNGG	2 cut(s)	67, 223
AgsI	TTSAA	3 cut(s)	167, 547, 556
AhlI	ACTAGT	1 cut(s)	277
AluBI	AGCT	4 cut(s)	98, 264, 317, 455
AluI	AGCT	4 cut(s)	98, 264, 317, 455
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	1 cut(s)	288
Alw44I	GTGCAC	1 cut(s)	360
AlwI	GGATC	3 cut(s)	114, 127, 512
AoxI	GGCC	2 cut(s)	133, 214
ApaLI	GTGCAC	1 cut(s)	360
ApeKI	GCWGC	2 cut(s)	314, 452
ApoI	RAATTY	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	2 cut(s)	209, 326
BaeGI	GKGCMC	1 cut(s)	364
BamHI	GGATCC	1 cut(s)	119
BbrPI	CACGTG	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	2 cut(s)	326, 464
BceAI	ACGGC	2 cut(s)	120, 581
BcoDI	GTCTC	1 cut(s)	288
BcuI	ACTAGT	1 cut(s)	277
BfaI	CTAG	1 cut(s)	278
BfmI	CTRYAG	1 cut(s)	456
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	2 cut(s)	315, 453
BlsI	GCNGC	2 cut(s)	316, 454
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	121
BmsI	GCATC	1 cut(s)	238
BoxI	GACNNNNGTC	1 cut(s)	231
BplI	GAGNNNNNCTC	2 cut(s)	185, 217
Bpu10I	CCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	586
Bsa29I	ATCGAT	1 cut(s)	507
BsaAI	YACGTR	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 223
Bse1I	ACTGG	1 cut(s)	403
Bse3DI	GCAATG	2 cut(s)	333, 495
BseCI	ATCGAT	1 cut(s)	507
BseLI	CCNNNNNNNGG	2 cut(s)	67, 223
BseMI	GCAATG	2 cut(s)	333, 495
BseMII	CTCAG	5 cut(s)	90, 92, 216, 243, 473
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	3 cut(s)	38, 47, 50
BseSI	GKGCMC	1 cut(s)	364
BseXI	GCAGC	2 cut(s)	326, 464
BsgI	GTGCAG	1 cut(s)	471
BshFI	GGCC	2 cut(s)	135, 216
BshVI	ATCGAT	1 cut(s)	507
BsiHKAI	GWGCWC	1 cut(s)	364
BslI	CCNNNNNNNGG	2 cut(s)	67, 223
BsmAI	GTCTC	1 cut(s)	288
BsmBI	CGTCTC	1 cut(s)	288
BsnI	GGCC	2 cut(s)	135, 216
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp1407I	TGTACA	1 cut(s)	616
Bsp143I	GATC	4 cut(s)	119, 127, 504, 508
BspACI	CCGC	2 cut(s)	68, 594
BspANI	GGCC	2 cut(s)	135, 216
BspCNI	CTCAG	5 cut(s)	91, 91, 215, 242, 474
BspDI	ATCGAT	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	121
BspPI	GGATC	3 cut(s)	114, 127, 512
BsrDI	GCAATG	2 cut(s)	333, 495
BsrGI	TGTACA	1 cut(s)	616
BsrI	ACTGG	1 cut(s)	403
BssMI	GATC	4 cut(s)	119, 127, 504, 508
Bst4CI	ACNGT	2 cut(s)	388, 460
Bst6I	CTCTTC	1 cut(s)	551
BstAUI	TGTACA	1 cut(s)	616
BstBAI	YACGTR	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	5 cut(s)	78, 99, 202, 229, 482
BstKTI	GATC	4 cut(s)	122, 130, 507, 511
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	4 cut(s)	119, 127, 504, 508
BstMWI	GCNNNNNNNGC	5 cut(s)	74, 141, 257, 323, 368
BstPAI	GACNNNNGTC	1 cut(s)	231
BstSFI	CTRYAG	1 cut(s)	456
BstSLI	GKGCMC	1 cut(s)	364
BstV1I	GCAGC	2 cut(s)	326, 464
BstX2I	RGATCY	2 cut(s)	119, 127
BstXI	CCANNNNNNTGG	1 cut(s)	130
BstYI	RGATCY	2 cut(s)	119, 127
Bsu15I	ATCGAT	1 cut(s)	507
BsuRI	GGCC	2 cut(s)	135, 216
BsuTUI	ATCGAT	1 cut(s)	507
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	133
ClaI	ATCGAT	1 cut(s)	507
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	3 cut(s)	34, 389, 617
CspCI	CAANNNNNGTGG	2 cut(s)	385, 420
CviJI	RGCY	9 cut(s)	92, 98, 111, 135, 216, 264, 317, 371, 455
CviKI_1	RGCY	9 cut(s)	92, 98, 111, 135, 216, 264, 317, 371, 455
CviQI	GTAC	3 cut(s)	34, 389, 617
DdeI	CTNAG	5 cut(s)	78, 99, 202, 229, 482
DpnI	GATC	4 cut(s)	121, 129, 506, 510
DpnII	GATC	4 cut(s)	119, 127, 504, 508
Eam1104I	CTCTTC	1 cut(s)	551
EarI	CTCTTC	1 cut(s)	551
EciI	GGCGGA	1 cut(s)	583
Eco32I	GATATC	1 cut(s)	429
Eco57I	CTGAAG	1 cut(s)	114
Eco72I	CACGTG	1 cut(s)	223
EcoRV	GATATC	1 cut(s)	429
Esp3I	CGTCTC	1 cut(s)	288
FaiI	YATR	5 cut(s)	114, 308, 323, 380, 441
FalI	AAGNNNNNCTT	4 cut(s)	548, 580, 574, 606
Fnu4HI	GCNGC	2 cut(s)	315, 453
Fsp4HI	GCNGC	2 cut(s)	315, 453
FspBI	CTAG	1 cut(s)	278
GluI	GCNGC	2 cut(s)	315, 453
HaeIII	GGCC	2 cut(s)	135, 216
HgaI	GACGC	1 cut(s)	320
HindIII	AAGCTT	1 cut(s)	262
HinfI	GANTC	8 cut(s)	16, 83, 183, 200, 227, 517, 568, 634
HphI	GGTGA	2 cut(s)	209, 326
Hpy166II	GTNNAC	3 cut(s)	226, 362, 619
Hpy188I	TCNGA	1 cut(s)	516
Hpy188III	TCNNGA	4 cut(s)	80, 164, 187, 608
Hpy8I	GTNNAC	3 cut(s)	226, 362, 619
Hpy99I	CGWCG	1 cut(s)	141
HpyAV	CCTTC	1 cut(s)	600
HpyCH4III	ACNGT	2 cut(s)	388, 460
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	3 cut(s)	260, 362, 452
HpyF10VI	GCNNNNNNNGC	5 cut(s)	74, 141, 257, 323, 368
HpyF3I	CTNAG	5 cut(s)	78, 99, 202, 229, 482
HpySE526I	ACGT	1 cut(s)	222
Kzo9I	GATC	4 cut(s)	119, 127, 504, 508
LmnI	GCTCC	1 cut(s)	60
Lsp1109I	GCAGC	2 cut(s)	326, 464
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	1 cut(s)	278
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	3 cut(s)	197, 332, 486
MalI	GATC	4 cut(s)	121, 129, 506, 510
MboI	GATC	4 cut(s)	119, 127, 504, 508
MboII	GAAGA	5 cut(s)	518, 546, 559, 568, 618
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	2 cut(s)	119, 127
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	3 cut(s)	152, 345, 542
MlyI	GAGTC	6 cut(s)	92, 192, 194, 221, 577, 643
MseI	TTAA	2 cut(s)	171, 646
MunI	CAATTG	1 cut(s)	345
MwoI	GCNNNNNNNGC	5 cut(s)	74, 141, 257, 323, 368
NdeII	GATC	4 cut(s)	119, 127, 504, 508
NlaIV	GGNNCC	1 cut(s)	121
NmuCI	GTSAC	2 cut(s)	197, 332
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	16, 517
PkrI	GCNGC	2 cut(s)	316, 454
PleI	GAGTC	6 cut(s)	91, 191, 194, 221, 576, 642
PmaCI	CACGTG	1 cut(s)	223
PmlI	CACGTG	1 cut(s)	223
PpsI	GAGTC	6 cut(s)	91, 191, 194, 221, 576, 642
Ppu21I	YACGTR	1 cut(s)	223
PshAI	GACNNNNGTC	1 cut(s)	231
PsiI	TTATAA	2 cut(s)	308, 380
PspCI	CACGTG	1 cut(s)	223
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	133
PsuI	RGATCY	2 cut(s)	119, 127
RsaI	GTAC	3 cut(s)	35, 390, 618
RsaNI	GTAC	3 cut(s)	34, 389, 617
SaqAI	TTAA	2 cut(s)	171, 646
SatI	GCNGC	2 cut(s)	315, 453
Sau3AI	GATC	4 cut(s)	119, 127, 504, 508
Sau96I	GGNCC	1 cut(s)	133
SchI	GAGTC	6 cut(s)	92, 192, 194, 221, 577, 643
SduI	GDGCHC	1 cut(s)	364
SetI	ASST	8 cut(s)	100, 225, 235, 266, 319, 457, 488, 624
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	456
SmlI	CTYRAG	1 cut(s)	565
SmoI	CTYRAG	1 cut(s)	565
SpeI	ACTAGT	1 cut(s)	277
Sse9I	AATT	3 cut(s)	152, 345, 542
SsiI	CCGC	2 cut(s)	68, 594
SspMI	CTAG	1 cut(s)	278
TaaI	ACNGT	2 cut(s)	388, 460
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	3 cut(s)	14, 246, 507
TasI	AATT	3 cut(s)	152, 345, 542
TatI	WGTACW	1 cut(s)	616
TfiI	GAWTC	2 cut(s)	16, 517
Tru1I	TTAA	2 cut(s)	171, 646
Tru9I	TTAA	2 cut(s)	171, 646
TscAI	CASTG	1 cut(s)	403
TseFI	GTSAC	2 cut(s)	197, 332
TseI	GCWGC	2 cut(s)	314, 452
Tsp45I	GTSAC	2 cut(s)	197, 332
TspDTI	ATGAA	1 cut(s)	630
TspRI	CASTG	1 cut(s)	403
VneI	GTGCAC	1 cut(s)	360
XapI	RAATTY	1 cut(s)	152
XspI	CTAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.