AT3G02940
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008586
Physical Location & Seq
Forward (+)
661849 .. 664011
2163 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G02940.2

Sequence Viewer

Length: 966 bp
ATGGGGAGATCACCGTGTTGCGATGAGAGCGGATTAAAGAAAGGGCCATGGACGCCAGAAGAAGATCAGAAACTGATAAATCACATAAGAAAACACGGCCATGGAAGCTGGAGAGCTCTACCCAAGCAAGCCGGTTTAAACCGGTGTGGGAAGAGTTGCAGATTGAGATGGACTAATTACTTGAGACCAGATATCAAAAGAGGAAACTTCACAGCTGAGGAAGAACAAACTATCATTAACCTTCATTCTCTTCTTGGGAACAAGTGGTCGTCTATAGCTGGTCATCTCCCAGGAAGAACGGATAACGAAATAAAGAACTATTGGAACACGCATATTAGAAAGAAACTTATTCAGATGGGAATCGATCCGGTGACCCATAGGCCAAGAACCGACCATCTAAACGTTCTAGCCGCTCTCCCGCAACTACTAGCTGCCGCAAATTTCAACAACCTCTTGAATCTAAATCAAAATATACAATTGGATGCAACAAGTGTTGCGAAAGCCCAACTGTTACATAGTATGATTCAAGTCCTTAGCAACAACAATACCTCTTCTTCCTTTGACATTCATCACACAACCAATAATCTCTTTGGCCAATCTTCTTTCTTAGAGAACCTACCAAATATTGAAAATCCTTATGATCAAACCCAAGGCCTCTCTCACATTGACGATCAGCCTCTGGATTCGTTTTCTAGCCCGATTCGAGTAGTTGCTTATCAACATGATCAGAATTTTATTCCGCCCTTGATTTCGACATCTCCTGATGAGTCTAAGGAAACCCAAATGATGGTCAAGAACAAGGAAATCATGAAGTATAATGATCATACTTCAAACCCTTCGTCGACCTCAACTTTTACACAAGATCACCAGCCATGGTGTGACATAATTGATGATGAAGCAAGTGATTCTTATTGGAAAGAGATCATAGAGCAAACTTGTTCGGAGCCTTGGCCATTTCGTGAATAG

Protein Analysis

321

Amino Acids

36.63

Weight (kDa)

6.2

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 3e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 77 2.5e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 111 5.5e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 115 2e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 787
AccBSI CCGCTC 2 cut(s) 30, 413
AccI GTMKAC 1 cut(s) 842
AciI CCGC 5 cut(s) 30, 411, 419, 435, 740
AclI AACGTT 1 cut(s) 402
AclWI GGATC 1 cut(s) 359
AcoI YGGCCR 3 cut(s) 97, 592, 950
AcsI RAATTY 2 cut(s) 439, 730
AcyI GRCGYC 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 787
AgeI ACCGGT 1 cut(s) 141
AgsI TTSAA 5 cut(s) 445, 457, 527, 629, 831
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 5 cut(s) 108, 116, 215, 278, 431
AluI AGCT 5 cut(s) 108, 116, 215, 278, 431
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 1 cut(s) 359
AlwNI CAGNNNCTG 2 cut(s) 73, 679
AoxI GGCC 6 cut(s) 44, 97, 380, 592, 652, 950
ApeKI GCWGC 1 cut(s) 431
ApoI RAATTY 2 cut(s) 439, 730
ArsI GACNNNNNNTTYG 2 cut(s) 824, 856
AsiGI ACCGGT 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 44
AsuHPI GGTGA 3 cut(s) 3, 382, 857
BalI TGGCCA 2 cut(s) 594, 952
BanII GRGCYC 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 118
BbvCI CCTCAGC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 418
BccI CCATC 4 cut(s) 162, 349, 402, 781
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 3 cut(s) 640, 724, 820
BcoDI GTCTC 1 cut(s) 178
BfaI CTAG 3 cut(s) 407, 428, 693
BfmI CTRYAG 1 cut(s) 273
BisI GCNGC 3 cut(s) 411, 432, 435
BlsI GCNGC 3 cut(s) 412, 433, 436
Bme1390I CCNGG 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 945
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 472
BpmI CTGGAG 1 cut(s) 130
Bpu10I CCTNAGC 2 cut(s) 216, 533
BpuEI CTTGAG 1 cut(s) 202
Bsa29I ATCGAT 1 cut(s) 363
BsaBI GATNNNNATC 1 cut(s) 359
BsaHI GRCGYC 1 cut(s) 53
BsaI GGTCTC 1 cut(s) 178
BsaJI CCNNGG 6 cut(s) 47, 100, 289, 649, 872, 947
BsaWI WCCGGW 2 cut(s) 141, 367
Bsc4I CCNNNNNNNGG 1 cut(s) 787
Bse118I RCCGGY 2 cut(s) 131, 141
Bse8I GATNNNNATC 1 cut(s) 359
BseBI CCWGG 1 cut(s) 291
BseCI ATCGAT 1 cut(s) 363
BseDI CCNNGG 6 cut(s) 47, 100, 289, 649, 872, 947
BseGI GGATG 1 cut(s) 487
BseJI GATNNNNATC 1 cut(s) 359
BseLI CCNNNNNNNGG 1 cut(s) 787
BseMII CTCAG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 418
BshFI GGCC 6 cut(s) 46, 99, 382, 594, 654, 952
BshTI ACCGGT 1 cut(s) 141
BshVI ATCGAT 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 118
BsiSI CCGG 3 cut(s) 132, 142, 368
BslI CCNNNNNNNGG 1 cut(s) 787
BsmAI GTCTC 1 cut(s) 178
BsnI GGCC 6 cut(s) 46, 99, 382, 594, 654, 952
Bso31I GGTCTC 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 9 cut(s) 8, 64, 364, 640, 670, 724, 820, 862, 921
Bsp19I CCATGG 3 cut(s) 47, 100, 872
BspACI CCGC 5 cut(s) 30, 411, 419, 435, 740
BspANI GGCC 6 cut(s) 46, 99, 382, 594, 654, 952
BspCNI CTCAG 1 cut(s) 208
BspDI ATCGAT 1 cut(s) 363
BspHI TCATGA 1 cut(s) 807
BspLI GGNNCC 1 cut(s) 945
BspPI GGATC 1 cut(s) 359
BspTNI GGTCTC 1 cut(s) 178
BsrBI CCGCTC 2 cut(s) 30, 413
BsrFI RCCGGY 2 cut(s) 131, 141
BssAI RCCGGY 2 cut(s) 131, 141
BssECI CCNNGG 6 cut(s) 47, 100, 289, 649, 872, 947
BssMI GATC 9 cut(s) 8, 64, 364, 640, 670, 724, 820, 862, 921
BssNI GRCGYC 1 cut(s) 53
BssT1I CCWWGG 5 cut(s) 47, 100, 649, 872, 947
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 2 cut(s) 15, 510
Bst6I CTCTTC 3 cut(s) 146, 255, 556
BstACI GRCGYC 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 4 cut(s) 216, 533, 607, 771
BstDSI CCRYGG 3 cut(s) 47, 100, 872
BstEII GGTNACC 1 cut(s) 370
BstF5I GGATG 1 cut(s) 487
BstKTI GATC 9 cut(s) 11, 67, 367, 643, 673, 727, 823, 865, 924
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 9 cut(s) 8, 64, 364, 640, 670, 724, 820, 862, 921
BstMWI GCNNNNNNNGC 3 cut(s) 27, 52, 105
BstNI CCWGG 1 cut(s) 291
BstPI GGTNACC 1 cut(s) 370
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 418
Bsu15I ATCGAT 1 cut(s) 363
BsuRI GGCC 6 cut(s) 46, 99, 382, 594, 654, 952
BsuTUI ATCGAT 1 cut(s) 363
BtgI CCRYGG 3 cut(s) 47, 100, 872
BtgZI GCGATG 1 cut(s) 36
BtsCI GGATG 1 cut(s) 487
Cac8I GCNNGC 1 cut(s) 129
CaiI CAGNNNCTG 2 cut(s) 73, 679
CciI TCATGA 1 cut(s) 807
Cfr10I RCCGGY 2 cut(s) 131, 141
Cfr13I GGNCC 1 cut(s) 44
ClaI ATCGAT 1 cut(s) 363
CseI GACGC 1 cut(s) 61
CspAI ACCGGT 1 cut(s) 141
CviAII CATG 5 cut(s) 48, 101, 722, 808, 873
DdeI CTNAG 4 cut(s) 216, 533, 607, 771
DpnI GATC 9 cut(s) 10, 66, 366, 642, 672, 726, 822, 864, 923
DpnII GATC 9 cut(s) 8, 64, 364, 640, 670, 724, 820, 862, 921
DraI TTTAAA 1 cut(s) 138
EaeI YGGCCR 3 cut(s) 97, 592, 950
Eam1104I CTCTTC 3 cut(s) 146, 255, 556
EarI CTCTTC 3 cut(s) 146, 255, 556
EciI GGCGGA 1 cut(s) 729
Ecl136II GAGCTC 1 cut(s) 116
Eco130I CCWWGG 5 cut(s) 47, 100, 649, 872, 947
Eco147I AGGCCT 1 cut(s) 654
Eco24I GRGCYC 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 178
Eco32I GATATC 1 cut(s) 193
Eco53kI GAGCTC 1 cut(s) 116
Eco91I GGTNACC 1 cut(s) 370
EcoICRI GAGCTC 1 cut(s) 116
EcoO65I GGTNACC 1 cut(s) 370
EcoRII CCWGG 1 cut(s) 289
EcoRV GATATC 1 cut(s) 193
EcoT14I CCWWGG 5 cut(s) 47, 100, 649, 872, 947
EcoT38I GRGCYC 1 cut(s) 118
ErhI CCWWGG 5 cut(s) 47, 100, 649, 872, 947
FaeI CATG 5 cut(s) 51, 104, 725, 811, 876
FalI AAGNNNNNCTT 2 cut(s) 892, 924
FatI CATG 5 cut(s) 47, 100, 721, 807, 872
FauI CCCGC 1 cut(s) 426
FbaI TGATCA 3 cut(s) 640, 724, 820
FblI GTMKAC 1 cut(s) 842
Fnu4HI GCNGC 3 cut(s) 411, 432, 435
FokI GGATG 1 cut(s) 494
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 3 cut(s) 411, 432, 435
FspBI CTAG 3 cut(s) 407, 428, 693
GluI GCNGC 3 cut(s) 411, 432, 435
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 6 cut(s) 46, 99, 382, 594, 654, 952
HapII CCGG 3 cut(s) 132, 142, 368
HgaI GACGC 1 cut(s) 61
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 5 cut(s) 51, 104, 725, 811, 876
HincII GTYRAC 1 cut(s) 843
HindII GTYRAC 1 cut(s) 843
HinfI GANTC 7 cut(s) 360, 457, 523, 683, 700, 767, 905
HpaII CCGG 3 cut(s) 132, 142, 368
HphI GGTGA 3 cut(s) 3, 382, 857
Hpy166II GTNNAC 1 cut(s) 843
Hpy188I TCNGA 4 cut(s) 69, 354, 729, 943
Hpy188III TCNNGA 6 cut(s) 454, 680, 761, 793, 808, 959
Hpy8I GTNNAC 1 cut(s) 843
Hpy99I CGWCG 1 cut(s) 844
HpyAV CCTTC 2 cut(s) 251, 846
HpyCH4III ACNGT 2 cut(s) 15, 510
HpyCH4IV ACGT 1 cut(s) 402
HpyCH4V TGCA 2 cut(s) 159, 485
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 52, 105
HpyF3I CTNAG 4 cut(s) 216, 533, 607, 771
HpySE526I ACGT 1 cut(s) 402
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 5 cut(s) 51, 104, 725, 811, 876
Ksp22I TGATCA 3 cut(s) 640, 724, 820
Kzo9I GATC 9 cut(s) 8, 64, 364, 640, 670, 724, 820, 862, 921
LmnI GCTCC 1 cut(s) 943
Lsp1109I GCAGC 1 cut(s) 418
LweI GCATC 1 cut(s) 472
MaeI CTAG 3 cut(s) 407, 428, 693
MaeII ACGT 1 cut(s) 402
MaeIII GTNAC 3 cut(s) 370, 510, 878
MalI GATC 9 cut(s) 10, 66, 366, 642, 672, 726, 822, 864, 923
MbiI CCGCTC 2 cut(s) 30, 413
MboI GATC 9 cut(s) 8, 64, 364, 640, 670, 724, 820, 862, 921
MboII GAAGA 9 cut(s) 71, 74, 163, 233, 242, 306, 543, 546, 591
MfeI CAATTG 1 cut(s) 476
MhlI GDGCHC 1 cut(s) 118
MlsI TGGCCA 2 cut(s) 594, 952
MluCI AATT 5 cut(s) 175, 439, 476, 730, 885
MluNI TGGCCA 2 cut(s) 594, 952
MlyI GAGTC 1 cut(s) 776
MnlI CCTC 7 cut(s) 194, 211, 461, 559, 665, 687, 856
Mox20I TGGCCA 2 cut(s) 594, 952
MscI TGGCCA 2 cut(s) 594, 952
MseI TTAA 3 cut(s) 35, 137, 237
MslI CAYNNNNRTG 1 cut(s) 99
Msp20I TGGCCA 2 cut(s) 594, 952
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 3 cut(s) 132, 142, 368
MspR9I CCNGG 1 cut(s) 291
MssI GTTTAAAC 1 cut(s) 138
MunI CAATTG 1 cut(s) 476
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 3 cut(s) 27, 52, 105
NcoI CCATGG 3 cut(s) 47, 100, 872
NdeII GATC 9 cut(s) 8, 64, 364, 640, 670, 724, 820, 862, 921
NlaIII CATG 5 cut(s) 51, 104, 725, 811, 876
NlaIV GGNNCC 1 cut(s) 945
NmuCI GTSAC 2 cut(s) 370, 878
PagI TCATGA 1 cut(s) 807
PceI AGGCCT 1 cut(s) 654
PfeI GAWTC 6 cut(s) 360, 457, 523, 683, 700, 905
PflMI CCANNNNNTGG 1 cut(s) 787
PinAI ACCGGT 1 cut(s) 141
PkrI GCNGC 3 cut(s) 412, 433, 436
PleI GAGTC 1 cut(s) 775
PmeI GTTTAAAC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 775
Psp124BI GAGCTC 1 cut(s) 118
Psp1406I AACGTT 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 289
PspEI GGTNACC 1 cut(s) 370
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 945
PspPI GGNCC 1 cut(s) 44
PstNI CAGNNNCTG 2 cut(s) 73, 679
PvuII CAGCTG 1 cut(s) 215
RseI CAYNNNNRTG 1 cut(s) 99
SacI GAGCTC 1 cut(s) 118
SalI GTCGAC 1 cut(s) 841
SaqAI TTAA 3 cut(s) 35, 137, 237
SatI GCNGC 3 cut(s) 411, 432, 435
Sau3AI GATC 9 cut(s) 8, 64, 364, 640, 670, 724, 820, 862, 921
Sau96I GGNCC 1 cut(s) 44
SchI GAGTC 1 cut(s) 776
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 118
SfaNI GCATC 1 cut(s) 472
SfcI CTRYAG 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
Sse9I AATT 5 cut(s) 175, 439, 476, 730, 885
SseBI AGGCCT 1 cut(s) 654
SsiI CCGC 5 cut(s) 30, 411, 419, 435, 740
SspI AATATT 1 cut(s) 625
SspMI CTAG 3 cut(s) 407, 428, 693
SstI GAGCTC 1 cut(s) 118
StuI AGGCCT 1 cut(s) 654
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 5 cut(s) 47, 100, 649, 872, 947
TaaI ACNGT 2 cut(s) 15, 510
TaiI ACGT 1 cut(s) 405
TaqI TCGA 4 cut(s) 363, 703, 752, 842
TasI AATT 5 cut(s) 175, 439, 476, 730, 885
TauI GCSGC 2 cut(s) 413, 437
TfiI GAWTC 6 cut(s) 360, 457, 523, 683, 700, 905
Tru1I TTAA 3 cut(s) 35, 137, 237
Tru9I TTAA 3 cut(s) 35, 137, 237
TseFI GTSAC 2 cut(s) 370, 878
TseI GCWGC 1 cut(s) 431
Tsp45I GTSAC 2 cut(s) 370, 878
TspDTI ATGAA 4 cut(s) 233, 557, 824, 909
TspGWI ACGGA 1 cut(s) 314
Van91I CCANNNNNTGG 1 cut(s) 787
XapI RAATTY 2 cut(s) 439, 730
XmiI GTMKAC 1 cut(s) 842
XspI CTAG 3 cut(s) 407, 428, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.