Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008586

Physical Location & Seq

Genomic Coordinates Forward (+)

3644650 .. 3646266

Gene Structure 1617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G031700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGGCAGATCCCCTTCTTGCGATGAACAGAGTGGTTTGAAGAAAGGTCCATGGACCACAGAGGAAGATGAGAAATTGATGGATTATATTGCCAGACATGGCCATGGAAGCTGGAGAGCTCTCCCCAAGCTTGCAGGCCTGAACCGGTGTGGCAAGAGTTGCAGACTAAGGTGGACAAATTACCTCAGGCCAGATATTAAGAGGGGAAAATTCTCTGAAGACGAAGAAAGAGTTATCATCAATCTTCACTCGGTTGTTGGAAACAAGTGGTCAAAGATTGCAACTCATCTTCCGGGGAGAACGGATAATGAAATCAAGAACTACTGGAACACCCACCTGAGAAAGAAGCTGCTACACATGGGGATTGATCCAAACACCCACAAGCCAAGGACTGACCTCAATCAGCTTCTGAATCTTTCACAGTTGCTCAGAGCAGCAAATGTCGGGCAGATGAATATGAGTTCTTGGGACAATGCCCTAAGCCTGAGGCTACAAGCAGGAGCAGCCCAACTAGCCAAAATGCAGCTACTGCAACATTTATGCATGCAGGTTGTGAACTCATCAAGTTCTGCTGCTGCTGCTCCTCCTCCTCCACTTCCTAATATTGACATGATGAGCACTTTTGGTTATCAAAATCTCAACCAATTTGGAGGGCAAGCCAACTCATTGGAAGGCTTTGAAGGACATAATAATAGCAATAATAATAATAATAATAATATTCCTACTTTTGACAACAACATGAGCAATTACTATGAAGATATGCTGCAGACCAAGAACCCATTTCCTGCATTAGTTTCAGCATCTCCTGGGACTTCTTGCAACACCAACACCAACCAAATGGAAAATAGCATGAGTGGTGATCCTGCAGCAGATTGCTTCTCCACTCACTCTCCCACCACCATCTTTGAGGCTTGGGAGAAGCTCATGGATGATGAAACCAGTGAATCCTACTGGAAAGATATACTAGAATCAATATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

327

Amino Acids

36.53

Weight (kDa)

6.36

Isoelectric Point (pI)

50.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02940 AT3G02940 AT3G02940 AT5G16770 AT5G16770 AT5G16770 AT5G16770
fragaria_vesca	FvH4_5g22510
malus_domestica	MD06G1037300.v1.1 MD16G1271400.v1.1
prunus_persica	Prupe.5G031700_v2.0.a1
pyrus_communis	pycom06g03080 pycom16g24100
rosa_chinensis	RchiOBHm_Chr7g0210281
rosa_laevigata	RLG00000003052
rosa_multiflora	Rmu_sc0003639.1_g000007 Rmu_sc0007188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248460
rosa_rugosa	Rorug07G0120400
rosa_samantha	Rh7AG253300 Rh7CG270200 Rh7DG260900
rosa_wichuraiana	Rw7G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	538
AclWI	GGATC	3 cut(s)	3, 362, 854
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	237
AgeI	ACCGGT	1 cut(s)	144
AgsI	TTSAA	2 cut(s)	40, 680
AjnI	CCWGG	1 cut(s)	805
AluBI	AGCT	7 cut(s)	111, 119, 130, 349, 406, 526, 922
AluI	AGCT	7 cut(s)	111, 119, 130, 349, 406, 526, 922
Alw21I	GWGCWC	2 cut(s)	121, 620
AlwI	GGATC	3 cut(s)	3, 362, 854
AlwNI	CAGNNNCTG	2 cut(s)	409, 529
AoxI	GGCC	3 cut(s)	100, 136, 188
ApeKI	GCWGC	9 cut(s)	349, 434, 503, 523, 572, 575, 578, 763, 866
ApoI	RAATTY	1 cut(s)	209
AsiGI	ACCGGT	1 cut(s)	144
AspS9I	GGNCC	2 cut(s)	47, 54
AsuC2I	CCSGG	1 cut(s)	294
AsuHPI	GGTGA	1 cut(s)	869
AvaII	GGWCC	2 cut(s)	47, 54
AxyI	CCTNAGG	2 cut(s)	185, 485
BalI	TGGCCA	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	121
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	2 cut(s)	121, 620
BbvI	GCAGC	9 cut(s)	336, 446, 515, 535, 559, 562, 565, 750, 878
BccI	CCATC	2 cut(s)	73, 908
BciT130I	CCWGG	1 cut(s)	807
BcnI	CCSGG	1 cut(s)	294
BfaI	CTAG	2 cut(s)	512, 965
BfmI	CTRYAG	2 cut(s)	764, 864
BfuAI	ACCTGC	1 cut(s)	538
BisI	GCNGC	9 cut(s)	350, 435, 504, 524, 573, 576, 579, 764, 867
BlsI	GCNGC	9 cut(s)	351, 436, 505, 525, 574, 577, 580, 765, 868
Bme1390I	CCNGG	2 cut(s)	294, 807
Bme18I	GGWCC	2 cut(s)	47, 54
BmgT120I	GGNCC	2 cut(s)	47, 54
BmrFI	CCNGG	2 cut(s)	294, 807
BmsI	GCATC	1 cut(s)	809
BpiI	GAAGAC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	133
Bpu10I	CCTNAGC	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	294
BsaJI	CCNNGG	5 cut(s)	50, 103, 293, 386, 806
BsaWI	WCCGGW	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	874, 904
Bse118I	RCCGGY	1 cut(s)	144
Bse1I	ACTGG	3 cut(s)	329, 939, 956
Bse21I	CCTNAGG	2 cut(s)	185, 485
BseBI	CCWGG	1 cut(s)	807
BseDI	CCNNGG	5 cut(s)	50, 103, 293, 386, 806
BseGI	GGATG	1 cut(s)	934
BseMII	CTCAG	4 cut(s)	199, 329, 442, 476
BseNI	ACTGG	3 cut(s)	329, 939, 956
BseRI	GAGGAG	3 cut(s)	573, 576, 579
BseXI	GCAGC	9 cut(s)	336, 446, 515, 535, 559, 562, 565, 750, 878
BshFI	GGCC	3 cut(s)	102, 138, 190
BshTI	ACCGGT	1 cut(s)	144
BsiHKAI	GWGCWC	2 cut(s)	121, 620
BsiSI	CCGG	2 cut(s)	145, 293
BslFI	GGGAC	2 cut(s)	482, 823
BsmFI	GGGAC	2 cut(s)	482, 823
BsnI	GGCC	3 cut(s)	102, 138, 190
Bsp1286I	GDGCHC	2 cut(s)	121, 620
Bsp143I	GATC	3 cut(s)	8, 367, 859
Bsp19I	CCATGG	2 cut(s)	50, 103
BspANI	GGCC	3 cut(s)	102, 138, 190
BspCNI	CTCAG	4 cut(s)	198, 330, 441, 477
BspMAI	CTGCAG	2 cut(s)	768, 868
BspMI	ACCTGC	1 cut(s)	538
BspPI	GGATC	3 cut(s)	3, 362, 854
BsrFI	RCCGGY	1 cut(s)	144
BsrI	ACTGG	3 cut(s)	329, 939, 956
BssAI	RCCGGY	1 cut(s)	144
BssECI	CCNNGG	5 cut(s)	50, 103, 293, 386, 806
BssMI	GATC	3 cut(s)	8, 367, 859
BssT1I	CCWWGG	3 cut(s)	50, 103, 386
Bst2UI	CCWGG	1 cut(s)	807
Bst4CI	ACNGT	1 cut(s)	423
BstAPI	GCANNNNNTGC	2 cut(s)	159, 529
BstC8I	GCNNGC	4 cut(s)	132, 136, 545, 657
BstDEI	CTNAG	6 cut(s)	167, 185, 338, 428, 479, 485
BstDSI	CCRYGG	2 cut(s)	50, 103
BstF5I	GGATG	1 cut(s)	934
BstKTI	GATC	3 cut(s)	11, 370, 862
BstMBI	GATC	3 cut(s)	8, 367, 859
BstMWI	GCNNNNNNNGC	6 cut(s)	108, 159, 503, 512, 529, 578
BstNI	CCWGG	1 cut(s)	807
BstNSI	RCATGY	1 cut(s)	547
BstSCI	CCNGG	2 cut(s)	292, 805
BstSFI	CTRYAG	2 cut(s)	764, 864
BstV1I	GCAGC	9 cut(s)	336, 446, 515, 535, 559, 562, 565, 750, 878
BstV2I	GAAGAC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	8
BstXI	CCANNNNNNTGG	2 cut(s)	667, 838
BstYI	RGATCY	1 cut(s)	8
Bsu36I	CCTNAGG	2 cut(s)	185, 485
BsuRI	GGCC	3 cut(s)	102, 138, 190
BtgI	CCRYGG	2 cut(s)	50, 103
BtgZI	GCGATG	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	934
BtsIMutI	CAGTG	1 cut(s)	946
BveI	ACCTGC	1 cut(s)	538
Cac8I	GCNNGC	4 cut(s)	132, 136, 545, 657
CaiI	CAGNNNCTG	2 cut(s)	409, 529
Cfr10I	RCCGGY	1 cut(s)	144
Cfr13I	GGNCC	2 cut(s)	47, 54
CspAI	ACCGGT	1 cut(s)	144
CspCI	CAANNNNNGTGG	2 cut(s)	886, 921
CviAII	CATG	9 cut(s)	51, 98, 104, 358, 544, 610, 739, 850, 925
DdeI	CTNAG	6 cut(s)	167, 185, 338, 428, 479, 485
DpnI	GATC	3 cut(s)	10, 369, 861
DpnII	GATC	3 cut(s)	8, 367, 859
EaeI	YGGCCR	1 cut(s)	100
Ecl136II	GAGCTC	1 cut(s)	119
Eco130I	CCWWGG	3 cut(s)	50, 103, 386
Eco147I	AGGCCT	1 cut(s)	138
Eco24I	GRGCYC	1 cut(s)	121
Eco47I	GGWCC	2 cut(s)	47, 54
Eco53kI	GAGCTC	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	237
Eco81I	CCTNAGG	2 cut(s)	185, 485
EcoICRI	GAGCTC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	805
EcoT14I	CCWWGG	3 cut(s)	50, 103, 386
EcoT22I	ATGCAT	1 cut(s)	545
EcoT38I	GRGCYC	1 cut(s)	121
ErhI	CCWWGG	3 cut(s)	50, 103, 386
FaeI	CATG	9 cut(s)	54, 101, 107, 361, 547, 613, 742, 853, 928
FaqI	GGGAC	2 cut(s)	482, 823
FatI	CATG	9 cut(s)	50, 97, 103, 357, 543, 609, 738, 849, 924
Fnu4HI	GCNGC	9 cut(s)	350, 435, 504, 524, 573, 576, 579, 764, 867
FokI	GGATG	1 cut(s)	941
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	9 cut(s)	350, 435, 504, 524, 573, 576, 579, 764, 867
FspBI	CTAG	2 cut(s)	512, 965
GluI	GCNGC	9 cut(s)	350, 435, 504, 524, 573, 576, 579, 764, 867
GsuI	CTGGAG	1 cut(s)	133
HaeIII	GGCC	3 cut(s)	102, 138, 190
HapII	CCGG	2 cut(s)	145, 293
Hin1II	CATG	9 cut(s)	54, 101, 107, 361, 547, 613, 742, 853, 928
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	3 cut(s)	412, 944, 968
HpaII	CCGG	2 cut(s)	145, 293
HphI	GGTGA	1 cut(s)	869
Hpy166II	GTNNAC	2 cut(s)	174, 556
Hpy188I	TCNGA	3 cut(s)	217, 411, 431
Hpy188III	TCNNGA	1 cut(s)	316
Hpy8I	GTNNAC	2 cut(s)	174, 556
HpyAV	CCTTC	3 cut(s)	24, 665, 674
HpyCH4III	ACNGT	1 cut(s)	423
HpyF10VI	GCNNNNNNNGC	6 cut(s)	108, 159, 503, 512, 529, 578
HpyF3I	CTNAG	6 cut(s)	167, 185, 338, 428, 479, 485
Hsp92II	CATG	9 cut(s)	54, 101, 107, 361, 547, 613, 742, 853, 928
Kzo9I	GATC	3 cut(s)	8, 367, 859
LmnI	GCTCC	2 cut(s)	500, 586
Lsp1109I	GCAGC	9 cut(s)	336, 446, 515, 535, 559, 562, 565, 750, 878
LweI	GCATC	1 cut(s)	809
MaeI	CTAG	2 cut(s)	512, 965
MalI	GATC	3 cut(s)	10, 369, 861
MboI	GATC	3 cut(s)	8, 367, 859
MboII	GAAGA	7 cut(s)	52, 77, 230, 236, 236, 281, 767
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	2 cut(s)	121, 620
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	5 cut(s)	74, 178, 209, 644, 745
MluNI	TGGCCA	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	238
Mox20I	TGGCCA	1 cut(s)	102
Mph1103I	ATGCAT	1 cut(s)	545
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	1 cut(s)	198
MslI	CAYNNNNRTG	1 cut(s)	102
Msp20I	TGGCCA	1 cut(s)	102
MspI	CCGG	2 cut(s)	145, 293
MspR9I	CCNGG	2 cut(s)	294, 807
MvaI	CCWGG	1 cut(s)	807
MwoI	GCNNNNNNNGC	6 cut(s)	108, 159, 503, 512, 529, 578
NciI	CCSGG	1 cut(s)	294
NcoI	CCATGG	2 cut(s)	50, 103
NdeII	GATC	3 cut(s)	8, 367, 859
NlaIII	CATG	9 cut(s)	54, 101, 107, 361, 547, 613, 742, 853, 928
NsiI	ATGCAT	1 cut(s)	545
NspI	RCATGY	1 cut(s)	547
PaeI	GCATGC	1 cut(s)	547
PceI	AGGCCT	1 cut(s)	138
PfeI	GAWTC	3 cut(s)	412, 944, 968
PinAI	ACCGGT	1 cut(s)	144
PkrI	GCNGC	9 cut(s)	351, 436, 505, 525, 574, 577, 580, 765, 868
Psp124BI	GAGCTC	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	805
PspGI	CCWGG	1 cut(s)	805
PspPI	GGNCC	2 cut(s)	47, 54
PstI	CTGCAG	2 cut(s)	768, 868
PstNI	CAGNNNCTG	2 cut(s)	409, 529
PsuI	RGATCY	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	102
SacI	GAGCTC	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	9 cut(s)	350, 435, 504, 524, 573, 576, 579, 764, 867
Sau3AI	GATC	3 cut(s)	8, 367, 859
Sau96I	GGNCC	2 cut(s)	47, 54
ScrFI	CCNGG	2 cut(s)	294, 807
SduI	GDGCHC	2 cut(s)	121, 620
SfaNI	GCATC	1 cut(s)	809
SfcI	CTRYAG	2 cut(s)	764, 864
SinI	GGWCC	2 cut(s)	47, 54
SmiMI	CAYNNNNRTG	1 cut(s)	102
SphI	GCATGC	1 cut(s)	547
Sse9I	AATT	5 cut(s)	74, 178, 209, 644, 745
SseBI	AGGCCT	1 cut(s)	138
SspI	AATATT	2 cut(s)	604, 718
SspMI	CTAG	2 cut(s)	512, 965
SstI	GAGCTC	1 cut(s)	121
StuI	AGGCCT	1 cut(s)	138
StyD4I	CCNGG	2 cut(s)	292, 805
StyI	CCWWGG	3 cut(s)	50, 103, 386
TaaI	ACNGT	1 cut(s)	423
TasI	AATT	5 cut(s)	74, 178, 209, 644, 745
TfiI	GAWTC	3 cut(s)	412, 944, 968
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	1 cut(s)	946
TseI	GCWGC	9 cut(s)	349, 434, 503, 523, 572, 575, 578, 763, 866
TspDTI	ATGAA	5 cut(s)	39, 324, 467, 768, 948
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	1 cut(s)	946
VpaK11BI	GGWCC	2 cut(s)	47, 54
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	1 cut(s)	547
XspI	CTAG	2 cut(s)	512, 965
Zsp2I	ATGCAT	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.